Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26429 Trifolium pratense HOM05D003660 ORTHO05D003415 5.9e-19 96.7 54 100.0
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 4.2e-17 90.5 54 92.6
Ca_19453_v3 Cicer arietinum L. HOM05D003660 ORTHO05D003415 4.7e-16 87.0 54 87.0
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 8.3e-13 76.3 53 75.5
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 9.2e-12 72.8 53 71.7
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 1.6e-11 72.0 53 69.8
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 2.7e-11 71.2 53 69.8
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 3.5e-11 70.9 54 72.2
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 3.5e-11 70.9 54 72.2
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 4.5e-11 70.5 53 73.6
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 4.5e-11 70.5 53 67.9
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 4.5e-11 70.5 53 69.8
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 7.8e-11 69.7 53 67.9
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 7.8e-11 69.7 53 66.0
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 1.0e-10 69.3 53 67.9
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 1.0e-10 69.3 53 69.8
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 1.7e-10 68.6 53 67.9
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 1.7e-10 68.6 54 66.7
TPR.G36105 Trifolium pratense HOM05D003660 ORTHO05D003415 1.7e-10 68.6 53 67.9
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.9e-10 67.4 53 64.2
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 3.9e-10 67.4 53 69.8
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 6.6e-10 66.6 54 68.5
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 6.6e-10 66.6 54 64.8
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 6.6e-10 66.6 53 64.2
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 8.6e-10 66.2 54 64.8
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 8.6e-10 66.2 53 66.0
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 1.5e-09 65.5 53 69.8
QL01p011704 Quercus lobata HOM05D003660 ORTHO05D003415 1.5e-09 65.5 48 70.8
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.5e-09 65.5 53 64.2
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 1.9e-09 65.1 54 63.0
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.9e-09 65.1 53 64.2
GSVIVG01036067001 Vitis vinifera HOM05D003660 ORTHO05D003415 1.9e-09 65.1 43 76.7
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 2.5e-09 64.7 53 64.2
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 3.3e-09 64.3 53 58.5
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 3.3e-09 64.3 53 62.3
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 3.3e-09 64.3 54 63.0
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 4.3e-09 63.9 53 62.3
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 4.3e-09 63.9 53 66.0
TWI31G1256 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 4.3e-09 63.9 53 66.0
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 4.3e-09 63.9 54 68.5
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 5.6e-09 63.5 54 64.8
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 7.3e-09 63.2 53 66.0
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 9.5e-09 62.8 54 64.8
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.2e-08 62.4 53 67.9
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 1.6e-08 62.0 54 63.0
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-08 62.0 54 63.0
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.6e-08 62.0 54 63.0
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.6e-08 62.0 53 60.4
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 2.1e-08 61.6 53 62.3
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 2.1e-08 61.6 53 62.3
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.1e-08 61.6 54 64.8
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 2.8e-08 61.2 53 62.3
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 2.8e-08 61.2 53 62.3
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 3.6e-08 60.8 53 60.4
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 3.6e-08 60.8 53 58.5
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 3.6e-08 60.8 53 58.5
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 8.0e-08 59.7 54 59.3
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 8.0e-08 59.7 54 59.3
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.0e-07 59.3 54 64.8
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.0e-07 59.3 53 56.6
EL10Ac7g16326 Beta vulgaris HOM05D003660 ORTHO05D003415 1.4e-07 58.9 42 69.0
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.4e-07 58.9 53 56.6
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 2.3e-07 58.2 54 55.6
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.3e-07 58.2 53 62.3
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 2.3e-07 58.2 53 62.3
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 3.1e-07 57.8 53 58.5
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 3.1e-07 57.8 53 52.8
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 4.0e-07 57.4 54 51.9
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 5.2e-07 57.0 53 58.5
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 6.8e-07 56.6 53 56.6
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 8.9e-07 56.2 53 58.5
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 8.9e-07 56.2 53 58.5
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 8.9e-07 56.2 53 58.5
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 8.9e-07 56.2 49 61.2
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 1.2e-06 55.8 53 54.7
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 1.2e-06 55.8 53 54.7
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 1.5e-06 55.5 53 58.5
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 2.0e-06 55.1 53 52.8
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 2.0e-06 55.1 53 62.3
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.6e-06 54.7 54 55.6
unitig_8.g2976 Utricularia gibba HOM05D003660 ORTHO05D003415 2.6e-06 54.7 53 56.6
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 3.4e-06 54.3 53 52.8
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 3.4e-06 54.3 51 56.9
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 4.4e-06 53.9 53 52.8
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 4.4e-06 53.9 53 52.8
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 4.4e-06 53.9 53 52.8
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 4.4e-06 53.9 51 56.9
BcaC01g02028 Brassica carinata HOM05D003660 ORTHO05D003415 5.8e-06 53.5 53 54.7
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 5.8e-06 53.5 53 54.7
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 5.8e-06 53.5 53 54.7
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 5.8e-06 53.5 54 53.7
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 7.5e-06 53.1 53 54.7
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 7.5e-06 53.1 53 50.9
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 7.5e-06 53.1 53 54.7
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 7.5e-06 53.1 56 53.6
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 9.8e-06 52.8 53 52.8
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 9.8e-06 52.8 53 50.9
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 9.8e-06 52.8 53 49.1
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 9.8e-06 52.8 53 50.9
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 9.8e-06 52.8 53 50.9
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 9.8e-06 52.8 53 50.9
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 9.8e-06 52.8 53 58.5
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 9.8e-06 52.8 53 50.9
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 9.8e-06 52.8 51 54.9


User provided reference genes

Program Settings