Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26414 Trifolium pratense HOM05D005628 ORTHO05D007348 3.9e-179 631.3 312 100.0
Psat6g000840 Pisum sativum HOM05D005628 ORTHO05D007348 4.5e-127 458.4 281 84.0
Ca_13486_v3 Cicer arietinum L. HOM05D005628 ORTHO05D007348 3.0e-123 445.7 285 81.4
Medtr1g026125 Medicago truncatula HOM05D005628 ORTHO05D007348 2.0e-119 433.0 278 80.9
Lj5g0010043 Lotus japonicus HOM05D005628 ORTHO05D007348 2.0e-111 406.4 281 77.6
Glyma.14G222500 Glycine max HOM05D005628 ORTHO05D007348 2.8e-105 386.0 281 74.4
TAR376G1006 Trochodendron aralioides HOM05D005628 ORTHO05D007348 2.4e-104 382.9 275 72.7
Lalb_Chr03g0033571 Lupinus albus HOM05D005628 ORTHO05D007348 4.1e-104 382.1 277 72.9
CiPaw.07G143500 Carya illinoinensis HOM05D005628 ORTHO05D007348 3.5e-103 379.0 281 69.8
Cc10_g01120 Coffea canephora HOM05D005628 ORTHO05D007348 7.7e-103 377.9 279 71.7
COL.COLO4_26082 Corchorus olitorius HOM05D005628 ORTHO05D007348 1.3e-102 377.1 277 72.2
Manes.05G142400 Manihot esculenta HOM05D005628 ORTHO05D007348 1.3e-102 377.1 280 70.4
Ciclev10001692m.g Citrus clementina HOM05D005628 ORTHO05D007348 1.7e-102 376.7 283 70.7
Gohir.A05G182700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 1.7e-102 376.7 279 72.0
Thecc.08G051900 Theobroma cacao HOM05D005628 ORTHO05D007348 1.7e-102 376.7 278 72.7
Actinidia29770 Actinidia chinensis HOM05D005628 ORTHO05D007348 2.2e-102 376.3 279 69.9
Gohir.D05G185700 Gossypium hirsutum HOM05D005628 ORTHO05D007348 2.2e-102 376.3 277 71.5
Gorai.009G191100 Gossypium raimondii HOM05D005628 ORTHO05D007348 2.2e-102 376.3 277 71.5
QL02p012950 Quercus lobata HOM05D005628 ORTHO05D007348 2.9e-102 375.9 277 72.6
arahy.Tifrunner.gnm1.ann1.W1N14J Arachis hypogaea HOM05D005628 ORTHO05D007348 5.0e-102 375.2 282 69.9
Sabra05G0189800 Salix brachista HOM05D005628 ORTHO05D007348 2.5e-101 372.9 279 71.3
Duzib116G0718 Durio zibethinus HOM05D005628 ORTHO05D007348 4.2e-101 372.1 268 73.9
Potri.005G245700 Populus trichocarpa HOM05D005628 ORTHO05D007348 4.2e-101 372.1 284 71.1
arahy.Tifrunner.gnm1.ann1.KUZ5B2 Arachis hypogaea HOM05D005628 ORTHO05D007348 5.5e-101 371.7 282 69.1
Cfa014012 Carpinus fangiana HOM05D005628 ORTHO05D007348 5.5e-101 371.7 239 76.2
Nn5g30848 Nelumbo nucifera HOM05D005628 ORTHO05D007348 2.1e-100 369.8 278 69.8
Haze_22711 Corylus avellana HOM05D005628 ORTHO05D007348 6.1e-100 368.2 266 72.2
RcHm_v2.0_Chr6g0303681 Rosa chinensis HOM05D005628 ORTHO05D007348 6.1e-100 368.2 285 69.5
Prupe.1G359300 Prunus persica HOM05D005628 ORTHO05D007348 2.3e-99 366.3 259 72.2
PGR031G3420 Punica granatum HOM05D005628 ORTHO05D007348 2.3e-99 366.3 290 67.2
FvH4_2g37930 Fragaria vesca HOM05D005628 ORTHO05D007348 4.0e-99 365.5 278 69.4
Cpa.g.sc26.263 Carica papaya HOM05D005628 ORTHO05D007348 5.2e-99 365.2 280 70.0
PSO170G4881 Papaver somniferum HOM05D005628 ORTHO05D007348 6.7e-99 364.8 283 66.8
DCAR_009514 Daucus carota HOM05D005628 ORTHO05D007348 2.0e-98 363.2 280 68.6
CANSAT64G0481 Cannabis sativa HOM05D005628 ORTHO05D007348 2.6e-98 362.8 252 71.8
CiPaw.08G069300 Carya illinoinensis HOM05D005628 ORTHO05D007348 2.6e-98 362.8 271 70.1
CAN.G311.75 Capsicum annuum HOM05D005628 ORTHO05D007348 4.4e-98 362.1 274 67.2
Atru.chr13.215 Acer truncatum HOM05D005628 ORTHO05D007348 5.7e-98 361.7 287 70.0
FAN20G0939 Fragaria x ananassa HOM05D005628 ORTHO05D007348 9.7e-98 360.9 278 68.0
FAN15G2092 Fragaria x ananassa HOM05D005628 ORTHO05D007348 1.7e-97 360.1 278 68.0
Lj4C17T5 Lonicera japonica HOM05D005628 ORTHO05D007348 1.7e-97 360.1 282 67.7
Phvul.001G002100 Phaseolus vulgaris HOM05D005628 ORTHO05D007348 1.7e-97 360.1 285 68.8
Oeu007384.1 Olea europaea HOM05D005628 ORTHO05D007348 2.2e-97 359.8 287 66.6
MSTRG.25277 Avicennia marina HOM05D005628 ORTHO05D007348 2.8e-97 359.4 280 66.1
FAN27G2668 Fragaria x ananassa HOM05D005628 ORTHO05D007348 4.8e-97 358.6 278 67.6
Solyc04g081970.3 Solanum lycopersicum HOM05D005628 ORTHO05D007348 6.3e-97 358.2 275 67.6
Sopen04g035620 Solanum pennellii HOM05D005628 ORTHO05D007348 6.3e-97 358.2 275 67.6
Dinv31894 Davidia involucrata HOM05D005628 ORTHO05D007348 8.2e-97 357.8 221 78.7
MBI05_g13277_MAGBIO Magnolia biondii HOM05D005628 ORTHO05D007348 1.1e-96 357.5 222 79.7
MD08G1007500 Malus domestica HOM05D005628 ORTHO05D007348 1.1e-96 357.5 280 68.6
vmacro04380 Vaccinium macrocarpon HOM05D005628 ORTHO05D007348 1.1e-96 357.5 286 66.1
Hma1.2p1_1598F.1_g292970 Hydrangea macrophylla HOM05D005628 ORTHO05D007348 1.8e-96 356.7 277 68.6
Rhsim07G0251100 Rhododendron simsii HOM05D005628 ORTHO05D007348 1.8e-96 356.7 280 66.8
PGSC0003DMG400009956 Solanum tuberosum HOM05D005628 ORTHO05D007348 1.8e-96 356.7 275 67.3
Aqoxy5G01095 Aquilegia oxysepala HOM05D005628 ORTHO05D007348 2.4e-96 356.3 274 67.9
TWI36G0492 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 2.4e-96 356.3 269 70.6
PSO210G2114 Papaver somniferum HOM05D005628 ORTHO05D007348 3.1e-96 355.9 231 76.6
AUR62036715 Chenopodium quinoa HOM05D005628 ORTHO05D007348 1.6e-95 353.6 284 64.8
Hund01723 Selenicereus undatus HOM05D005628 ORTHO05D007348 2.7e-95 352.8 274 66.4
VMungo0647G1170 Vigna mungo HOM05D005628 ORTHO05D007348 5.9e-95 351.7 286 66.1
TWI56G0240 Tripterygium wilfordii HOM05D005628 ORTHO05D007348 7.7e-95 351.3 273 69.2
Thhalv10018920m.g Eutrema salsugineum HOM05D005628 ORTHO05D007348 1.0e-94 350.9 224 76.3
CSS0034642 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 1.7e-94 350.1 278 68.0
A07p41640 Brassica napus HOM05D005628 ORTHO05D007348 2.2e-94 349.7 224 76.3
AL2G36120 Arabidopsis lyrata HOM05D005628 ORTHO05D007348 3.8e-94 349.0 247 71.3
EL10Ac1g02081 Beta vulgaris HOM05D005628 ORTHO05D007348 3.8e-94 349.0 284 65.1
ClCG08G014020 Citrullus lanatus HOM05D005628 ORTHO05D007348 5.0e-94 348.6 271 67.2
THA.LOC104811445 Tarenaya hassleriana HOM05D005628 ORTHO05D007348 5.0e-94 348.6 247 70.0
MD15G1006700 Malus domestica HOM05D005628 ORTHO05D007348 8.5e-94 347.8 281 67.6
Aa31LG4G6200 Aethionema arabicum HOM05D005628 ORTHO05D007348 7.2e-93 344.7 276 64.9
BraA07t31693Z Brassica rapa HOM05D005628 ORTHO05D007348 7.2e-93 344.7 224 75.4
Sp5g31200 Schrenkiella parvula HOM05D005628 ORTHO05D007348 1.6e-92 343.6 224 75.0
AT1G76080 Arabidopsis thaliana HOM05D005628 ORTHO05D007348 2.1e-92 343.2 247 70.0
Sed0003076 Sechium edule HOM05D005628 ORTHO05D007348 2.1e-92 343.2 291 64.3
CsaV3_2G024440 Cucumis sativus L. HOM05D005628 ORTHO05D007348 2.7e-92 342.8 267 66.7
unitig_749.g13905 Utricularia gibba HOM05D005628 ORTHO05D007348 2.7e-92 342.8 231 72.3
C06p50020 Brassica napus HOM05D005628 ORTHO05D007348 4.7e-92 342.0 224 74.6
Sc15g0004660 Simmondsia chinensis HOM05D005628 ORTHO05D007348 4.7e-92 342.0 277 65.7
BolC6t40041H Brassica oleracea HOM05D005628 ORTHO05D007348 6.1e-92 341.7 224 74.6
Carub.0002s2297 Capsella rubella HOM05D005628 ORTHO05D007348 1.0e-91 340.9 247 69.2
Migut.C00901 Erythranthe guttata HOM05D005628 ORTHO05D007348 1.0e-91 340.9 280 63.6
HanXRQChr05g0146641 Helianthus annuus HOM05D005628 ORTHO05D007348 1.0e-91 340.9 286 62.9
Lsat_1_v5_gn_0_661 Lactuca sativa HOM05D005628 ORTHO05D007348 1.0e-91 340.9 246 69.9
CARHR069620 Cardamine hirsuta HOM05D005628 ORTHO05D007348 1.4e-91 340.5 245 70.2
Eucgr.F03707 Eucalyptus grandis HOM05D005628 ORTHO05D007348 2.3e-91 339.7 277 66.1
MELO3C011340.2 Cucumis melo HOM05D005628 ORTHO05D007348 2.0e-90 336.7 269 66.2
Actinidia37955 Actinidia chinensis HOM05D005628 ORTHO05D007348 3.7e-89 332.4 255 69.8
ECA232G2943 Erigeron canadensis HOM05D005628 ORTHO05D007348 2.4e-88 329.7 211 74.4
BcaC08g47300 Brassica carinata HOM05D005628 ORTHO05D007348 9.1e-88 327.8 224 73.7
SGA_v2.0_scaffold145G36102 Striga asiatica HOM05D005628 ORTHO05D007348 1.3e-86 323.9 203 74.9
Nitab4.5_0003030g0070 Nicotiana tabacum HOM05D005628 ORTHO05D007348 4.2e-85 318.9 274 63.9
BcaC08g47301 Brassica carinata HOM05D005628 ORTHO05D007348 1.6e-84 317.0 189 79.9
BcaC08g47294 Brassica carinata HOM05D005628 ORTHO05D007348 2.0e-82 310.1 224 69.6
Os07g0476900 Oryza sativa ssp. japonica HOM05D005628 ORTHO05D007348 2.0e-82 310.1 209 72.2
SEGI_09368 Sequoiadendron giganteum HOM05D005628 ORTHO05D007348 2.6e-82 309.7 237 63.7
Zm00001eb319950 Zea mays HOM05D005628 ORTHO05D007348 2.8e-81 306.2 258 61.2
PSO170G2194 Papaver somniferum HOM05D005628 ORTHO05D007348 8.3e-81 304.7 286 57.3
PSO648G0024 Papaver somniferum HOM05D005628 ORTHO05D007348 5.4e-80 302.0 266 59.8
PSO648G0070 Papaver somniferum HOM05D005628 ORTHO05D007348 5.4e-80 302.0 266 59.8
PSO648G0080 Papaver somniferum HOM05D005628 ORTHO05D007348 5.4e-80 302.0 266 59.8
PSO795G0001 Papaver somniferum HOM05D005628 ORTHO05D007348 5.4e-80 302.0 266 59.8
PSO017G6535 Papaver somniferum HOM05D005628 ORTHO05D007348 7.0e-80 301.6 232 65.1
ATR0661G503 Amborella trichopoda HOM05D005628 ORTHO05D007348 7.8e-79 298.1 209 67.0
PSO339G4729 Papaver somniferum HOM05D005628 ORTHO05D007348 2.9e-78 296.2 289 56.4
AUR62013879 Chenopodium quinoa HOM05D005628 ORTHO05D007348 2.5e-77 293.1 177 78.5
Peaxi162Scf00174g00813 Petunia axillaris HOM05D005628 ORTHO05D007348 2.3e-75 286.6 274 60.2
HPP92_014531 Vanilla planifolia HOM05D005628 ORTHO05D007348 4.0e-75 285.8 283 55.5
CDE02G2619 Ceratophyllum demersum HOM05D005628 ORTHO05D007348 1.9e-69 266.9 275 54.5
SMO356G0420 Selaginella moellendorffii HOM05D005628 ORTHO05D007348 7.3e-69 265.0 209 61.2
Mapoly0024s0029 Marchantia polymorpha HOM05D005628 ORTHO05D007348 6.2e-68 261.9 239 52.3
Lj9P400T45 Lonicera japonica HOM05D005628 ORTHO05D007348 8.0e-68 261.5 247 54.3
Pp3c13_21520 Physcomitrium patens HOM05D005628 ORTHO05D007348 1.4e-67 260.8 233 55.4
CBR_g26413 Chara braunii HOM05D005628 ORTHO05D007348 1.8e-59 233.8 220 51.4
C02p33470 Brassica napus HOM05D005628 ORTHO05D007348 6.0e-55 218.8 149 72.5
Ah.00g000640 Amaranthus hybridus HOM05D005628 ORTHO05D007348 8.6e-54 214.9 120 86.7
BcaC03g15644 Brassica carinata HOM05D005628 ORTHO05D007348 3.4e-50 203.0 122 78.7
BolC2t09357H Brassica oleracea HOM05D005628 ORTHO05D007348 1.7e-49 200.7 122 77.9
Migut.B00054 Erythranthe guttata HOM05D005628 ORTHO05D007348 7.1e-48 195.3 262 43.1
SGA_v2.0_scaffold58G20340 Striga asiatica HOM05D005628 ORTHO05D007348 8.1e-44 181.8 220 42.3
A02p20420 Brassica napus HOM05D005628 ORTHO05D007348 2.4e-40 170.2 106 74.5
Prupe.6G111600 Prunus persica HOM05D005628 ORTHO05D007348 3.1e-35 153.3 100 75.0
Potri.002G016401 Populus trichocarpa HOM05D005628 ORTHO05D007348 8.1e-28 128.6 81 74.1
BraA02t07074Z Brassica rapa HOM05D005628 ORTHO05D007348 5.8e-18 95.9 57 77.2
Cre14.g624201 Chlamydomonas reinhardtii HOM05D005628 ORTHO05D007348 2.9e-17 93.6 266 29.3
MCO15G282 Micromonas commoda HOM05D005628 ORTHO05D007348 2.3e-14 84.0 256 25.8
CSS0009264 Camellia sinensis var. sinensis HOM05D005628 ORTHO05D007348 4.3e-13 79.7 44 79.5
GSVIVG01023970001 Vitis vinifera HOM05D000151 ORTHO05D000074 7.4e-13 79.0 59 64.4
PRCOL_00004342 Prasinoderma coloniale HOM05D005628 ORTHO05D007348 5.3e-11 72.8 234 29.5
PRCOL_00003728 Prasinoderma coloniale HOM05D005628 ORTHO05D005467 2.0e-10 70.9 118 36.4
Pp3c9_20570 Physcomitrium patens HOM05D001256 ORTHO05D000288 3.2e-08 63.5 110 38.2
Lsat_1_v5_gn_5_99920 Lactuca sativa HOM05D000247 ORTHO05D000288 5.5e-08 62.8 95 34.7
Mapoly0118s0007 Marchantia polymorpha HOM05D001256 ORTHO05D000288 1.6e-07 61.2 90 30.0
Pp3c7_2920 Physcomitrium patens HOM05D000247 ORTHO05D000288 2.1e-07 60.8 94 28.7
SEGI_16012 Sequoiadendron giganteum HOM05D005628 ORTHO05D000288 2.1e-07 60.8 111 35.1
VMungo1383G3503 Vigna mungo HOM05D005628 ORTHO05D007348 2.7e-07 60.5 37 73.0
AagrBONN_evm.TU.Sc2ySwM_344.2998 Anthoceros agrestis HOM05D005628 ORTHO05D005467 6.1e-07 59.3 88 35.2
Actinidia29804 Actinidia chinensis HOM05D000247 ORTHO05D000288 7.9e-07 58.9 100 35.0
Pp3c15_21760 Physcomitrium patens HOM05D001256 ORTHO05D000288 1.3e-06 58.2 139 32.4
VMungo1309G0246 Vigna mungo HOM05D000247 ORTHO05D000288 1.3e-06 58.2 94 31.9
CBR_g26356 Chara braunii HOM05D000247 ORTHO05D000288 1.8e-06 57.8 93 25.8
CSS0031247 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 2.3e-06 57.4 94 30.9
SMO364G0660 Selaginella moellendorffii HOM05D005628 ORTHO05D000288 3.0e-06 57.0 67 34.3
ClCG07G003750 Citrullus lanatus HOM05D000247 ORTHO05D000288 3.9e-06 56.6 207 27.5
CSS0028675 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 6.7e-06 55.8 94 31.9
Potri.007G018000 Populus trichocarpa HOM05D000247 ORTHO05D000288 6.7e-06 55.8 94 31.9
vmacro04313 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 6.7e-06 55.8 94 31.9
SEGI_06061 Sequoiadendron giganteum HOM05D000247 ORTHO05D000288 8.7e-06 55.5 89 33.7


User provided reference genes

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