Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26402 Trifolium pratense HOM05D007355 ORTHO05D009343 3.1e-63 245.0 126 100.0
Medtr1g025150 Medicago truncatula HOM05D007355 ORTHO05D009343 3.0e-29 132.1 84 85.7
arahy.Tifrunner.gnm1.ann1.Y2NNQI Arachis hypogaea HOM05D007355 ORTHO05D009343 3.6e-27 125.2 104 67.3
Ca_13424_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 4.7e-27 124.8 83 81.9
Ca_13425_v3 Cicer arietinum L. HOM05D007355 ORTHO05D009343 4.7e-27 124.8 83 81.9
Lalb_Chr14g0369841 Lupinus albus HOM05D007355 ORTHO05D009343 5.2e-26 121.3 109 64.2
arahy.Tifrunner.gnm1.ann1.PADY8Y Arachis hypogaea HOM05D007355 ORTHO05D009343 2.0e-25 119.4 99 66.7
Glyma.06G024800 Glycine max HOM05D007355 ORTHO05D009343 1.4e-23 113.2 125 57.6
Lj5g0016063 Lotus japonicus HOM05D007355 ORTHO05D009343 5.4e-23 111.3 140 53.6
Manes.05G148200 Manihot esculenta HOM05D007355 ORTHO05D009343 1.2e-22 110.2 132 53.8
COL.COLO4_26156 Corchorus olitorius HOM05D007355 ORTHO05D009343 1.6e-22 109.8 129 54.3
Manes.18G014200 Manihot esculenta HOM05D007355 ORTHO05D009343 2.1e-22 109.4 96 64.6
CiPaw.08G065900 Carya illinoinensis HOM05D007355 ORTHO05D009343 3.5e-22 108.6 97 63.9
Gohir.A06G004700 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.6e-22 108.2 112 58.9
FAN20G0162 Fragaria x ananassa HOM05D007355 ORTHO05D009343 6.0e-22 107.8 107 58.9
FAN27G0012 Fragaria x ananassa HOM05D007355 ORTHO05D009343 1.3e-21 106.7 120 56.7
Sabra05G0184200 Salix brachista HOM05D007355 ORTHO05D009343 1.3e-21 106.7 127 59.1
PGSC0003DMG400009860 Solanum tuberosum HOM05D007355 ORTHO05D009343 1.3e-21 106.7 132 50.8
Gohir.D06G000500 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.7e-21 106.3 112 58.0
Gorai.010G004900 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.7e-21 106.3 112 58.0
Lj1g0016145 Lotus japonicus HOM05D007355 ORTHO05D009343 1.7e-21 106.3 115 56.5
FAN15G2202 Fragaria x ananassa HOM05D007355 ORTHO05D009343 2.3e-21 105.9 120 56.7
VMungo1309G0669 Vigna mungo HOM05D007355 ORTHO05D009343 2.3e-21 105.9 126 54.8
Potri.005G238400 Populus trichocarpa HOM05D007355 ORTHO05D009343 3.0e-21 105.5 128 57.8
Thecc.08G043500 Theobroma cacao HOM05D007355 ORTHO05D009343 3.0e-21 105.5 102 53.9
QL02p011487 Quercus lobata HOM05D007355 ORTHO05D009343 5.1e-21 104.8 122 58.2
Solyc04g081380.1 Solanum lycopersicum HOM05D007355 ORTHO05D009343 5.1e-21 104.8 132 50.0
Glyma.04G024700 Glycine max HOM05D007355 ORTHO05D009343 1.1e-20 103.6 126 53.2
Gorai.009G194900 Gossypium raimondii HOM05D007355 ORTHO05D009343 5.6e-20 101.3 124 54.8
Gohir.A05G186732 Gossypium hirsutum HOM05D007355 ORTHO05D009343 7.3e-20 100.9 124 54.8
PGR083G2600 Punica granatum HOM05D007355 ORTHO05D009343 9.6e-20 100.5 121 50.4
Phvul.009G016500 Phaseolus vulgaris HOM05D007355 ORTHO05D009343 2.8e-19 99.0 126 53.2
Gohir.D05G189650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 4.8e-19 98.2 124 54.0
Ciclev10003277m.g Citrus clementina HOM05D007355 ORTHO05D009343 1.1e-18 97.1 83 62.7
Haze_22626 Corylus avellana HOM05D007355 ORTHO05D009343 3.1e-18 95.5 82 68.3
TAR625G0791 Trochodendron aralioides HOM05D007355 ORTHO05D009343 3.1e-18 95.5 114 56.1
ClCG05G018320 Citrullus lanatus HOM05D007355 ORTHO05D009343 4.0e-18 95.1 92 59.8
Duzib093G0416 Durio zibethinus HOM05D007355 ORTHO05D009343 9.0e-18 94.0 81 59.3
Sed0019478 Sechium edule HOM05D007355 ORTHO05D009343 2.0e-17 92.8 99 57.6
CsaV3_3G045820 Cucumis sativus L. HOM05D007355 ORTHO05D009343 7.6e-17 90.9 80 62.5
Cpa.g.sc26.34 Carica papaya HOM05D007355 ORTHO05D009343 9.9e-17 90.5 124 46.0
Lalb_Chr22g0354351 Lupinus albus HOM05D007355 ORTHO05D009343 9.9e-17 90.5 87 62.1
Gohir.A05G257150 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.3e-16 90.1 83 60.2
Gorai.009G270200 Gossypium raimondii HOM05D007355 ORTHO05D009343 1.3e-16 90.1 83 60.2
Eucgr.F01645 Eucalyptus grandis HOM05D007355 ORTHO05D009343 1.7e-16 89.7 73 67.1
Aqoxy5G01778 Aquilegia oxysepala HOM05D007355 ORTHO05D009343 3.8e-16 88.6 118 53.4
DCAR_017465 Daucus carota HOM05D007355 ORTHO05D009343 3.8e-16 88.6 122 48.4
Sed0024841 Sechium edule HOM05D007355 ORTHO05D009343 3.8e-16 88.6 113 46.9
Cfa013942 Carpinus fangiana HOM05D007355 ORTHO05D009343 6.4e-16 87.8 83 62.7
Gohir.D05G258650 Gossypium hirsutum HOM05D007355 ORTHO05D009343 1.1e-15 87.0 83 59.0
MD15G1013100 Malus domestica HOM05D007355 ORTHO05D009343 1.1e-15 87.0 85 60.0
Peaxi162Scf00400g00042 Petunia axillaris HOM05D007355 ORTHO05D009343 1.4e-15 86.7 128 44.5
Hma1.2p1_0638F.1_g193820 Hydrangea macrophylla HOM05D007355 ORTHO05D009343 3.2e-15 85.5 118 46.6
ClCG08G014360 Citrullus lanatus HOM05D007355 ORTHO05D009343 9.3e-15 84.0 120 48.3
Sc15g0005040 Simmondsia chinensis HOM05D007355 ORTHO05D009343 9.3e-15 84.0 93 53.8
SalBow7G4291 Salvia bowleyana HOM05D007355 ORTHO05D009343 1.2e-14 83.6 83 56.6
Dinv39511 Davidia involucrata HOM05D007355 ORTHO05D009343 1.6e-14 83.2 104 53.8
Actinidia37930 Actinidia chinensis HOM05D007355 ORTHO05D009343 3.5e-14 82.0 100 53.0
Nn5g30158 Nelumbo nucifera HOM05D007355 ORTHO05D009343 4.6e-14 81.6 118 52.5
CiPaw.07G150900 Carya illinoinensis HOM05D007355 ORTHO05D009343 1.3e-13 80.1 77 59.7
Nn1g05885 Nelumbo nucifera HOM05D007355 ORTHO05D009343 1.3e-13 80.1 126 50.8
CsaV3_2G029470 Cucumis sativus L. HOM05D007355 ORTHO05D009343 1.7e-13 79.7 89 51.7
Prupe.1G366200 Prunus persica HOM05D007355 ORTHO05D009343 1.7e-13 79.7 101 53.5
MELO3C011006.2 Cucumis melo HOM05D007355 ORTHO05D009343 3.0e-13 79.0 123 43.9
C06p49660 Brassica napus HOM05D007355 ORTHO05D009343 5.1e-13 78.2 77 55.8
BolC6t40005H Brassica oleracea HOM05D007355 ORTHO05D009343 5.1e-13 78.2 77 55.8
C08p19840 Brassica napus HOM05D007355 ORTHO05D009343 1.1e-12 77.0 111 48.6
BolC8t49623H Brassica oleracea HOM05D007355 ORTHO05D009343 1.1e-12 77.0 111 48.6
Atru.chr13.303 Acer truncatum HOM05D007355 ORTHO05D009343 1.5e-12 76.6 73 58.9
CSS0013130 Camellia sinensis var. sinensis HOM05D007355 ORTHO05D009343 1.5e-12 76.6 91 59.3
Sp1g17750 Schrenkiella parvula HOM05D007355 ORTHO05D009343 1.5e-12 76.6 114 47.4
BcaC08g47049 Brassica carinata HOM05D007355 ORTHO05D009343 1.9e-12 76.3 77 55.8
Aa31LG4G5940 Aethionema arabicum HOM05D007355 ORTHO05D009343 2.5e-12 75.9 84 51.2
DCAR_013865 Daucus carota HOM05D007355 ORTHO05D009343 2.5e-12 75.9 104 50.0
CARHR020450 Cardamine hirsuta HOM05D007355 ORTHO05D009343 4.3e-12 75.1 90 53.3
BcaC07g39013 Brassica carinata HOM05D007355 ORTHO05D009343 5.6e-12 74.7 110 47.3
A07p41240 Brassica napus HOM05D007355 ORTHO05D009343 5.6e-12 74.7 77 54.5
BraA07t31659Z Brassica rapa HOM05D007355 ORTHO05D009343 5.6e-12 74.7 77 54.5
A08p29560 Brassica napus HOM05D007355 ORTHO05D009343 7.4e-12 74.3 79 58.2
BraA08t34894Z Brassica rapa HOM05D007355 ORTHO05D009343 7.4e-12 74.3 79 58.2
Thhalv10009918m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 2.1e-11 72.8 78 55.1
AL1G32690 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 3.6e-11 72.0 74 60.8
Carub.0002s2256 Capsella rubella HOM05D007355 ORTHO05D009343 3.6e-11 72.0 77 55.8
THA.LOC104814032 Tarenaya hassleriana HOM05D007355 ORTHO05D009343 4.8e-11 71.6 81 51.9
AT1G75717 Arabidopsis thaliana HOM05D007355 ORTHO05D009343 8.1e-11 70.9 75 54.7
Carub.0001s1949 Capsella rubella HOM05D007355 ORTHO05D009343 8.1e-11 70.9 79 57.0
BcaB03g14421 Brassica carinata HOM05D007355 ORTHO05D009343 1.1e-10 70.5 116 37.9
MBI05_g15356_MAGBIO Magnolia biondii HOM05D007355 ORTHO05D009343 1.1e-10 70.5 102 47.1
CAN.G311.23 Capsicum annuum HOM05D007355 ORTHO05D009343 1.4e-10 70.1 58 62.1
Ah.11g039070 Amaranthus hybridus HOM05D007355 ORTHO05D009343 2.4e-10 69.3 75 56.0
Thhalv10019842m.g Eutrema salsugineum HOM05D007355 ORTHO05D009343 2.4e-10 69.3 77 51.9
Rhsim07G0246800 Rhododendron simsii HOM05D007355 ORTHO05D009343 3.1e-10 68.9 77 53.2
Migut.C00824 Erythranthe guttata HOM05D007355 ORTHO05D009343 4.0e-10 68.6 102 45.1
Lsat_1_v5_gn_2_9841 Lactuca sativa HOM05D007355 ORTHO05D009343 9.0e-10 67.4 127 37.8
AL2G35700 Arabidopsis lyrata HOM05D007355 ORTHO05D009343 2.0e-09 66.2 77 49.4
BcaB02g07039 Brassica carinata HOM05D007355 ORTHO05D009343 3.4e-09 65.5 77 48.1
CARHR069120 Cardamine hirsuta HOM05D007355 ORTHO05D009343 3.4e-09 65.5 75 50.7
BcaB03g12886 Brassica carinata HOM05D007355 ORTHO05D009343 9.9e-09 63.9 80 48.8
BcaC08g45561 Brassica carinata HOM05D007355 ORTHO05D009343 3.8e-08 62.0 77 45.5
BcaB03g14350 Brassica carinata HOM05D007355 ORTHO05D009343 4.9e-08 61.6 72 44.4
C06p32480 Brassica napus HOM05D007355 ORTHO05D009343 8.4e-08 60.8 77 45.5
BolC6t38371H Brassica oleracea HOM05D007355 ORTHO05D009343 8.4e-08 60.8 77 45.5
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 8.4e-08 60.8 82 46.3


User provided reference genes

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