Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 1.2e-93 346.7 193 100.0
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.5e-85 319.7 184 96.7
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 4.2e-83 311.6 185 92.4
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 1.2e-69 266.9 185 85.4
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.6e-64 249.2 184 77.2
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.6e-64 249.2 184 77.2
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 3.1e-62 242.3 184 77.7
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.0e-60 237.3 175 73.7
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 3.8e-60 235.3 181 72.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 5.0e-60 235.0 181 72.4
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.4e-57 226.9 184 73.4
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 5.9e-53 211.5 184 65.8
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 6.5e-52 208.0 174 68.4
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 3.2e-51 205.7 175 64.6
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 2.1e-50 203.0 177 61.6
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.8e-49 199.9 184 60.3
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.3e-49 199.5 173 62.4
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 3.0e-49 199.1 175 61.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 7.7e-45 184.5 174 60.3
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 7.7e-45 184.5 175 56.6
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 1.3e-44 183.7 173 58.4
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.7e-44 183.3 181 56.4
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.2e-44 183.0 174 58.0
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.9e-44 182.6 180 55.6
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 2.9e-44 182.6 180 56.1
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 2.9e-44 182.6 175 57.7
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 8.5e-44 181.0 180 56.1
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 8.5e-44 181.0 180 56.1
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 8.5e-44 181.0 177 56.5
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 8.5e-44 181.0 183 55.7
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 2.5e-43 179.5 180 55.6
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.5e-43 179.5 186 55.4
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 7.2e-43 177.9 176 55.7
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 7.2e-43 177.9 179 55.3
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 9.4e-43 177.6 175 56.6
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 1.2e-42 177.2 168 58.3
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 3.6e-42 175.6 180 55.0
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 1.0e-41 174.1 183 55.2
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 4.0e-41 172.2 175 55.4
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 5.2e-41 171.8 181 53.6
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 2.0e-40 169.9 191 52.4
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 3.4e-40 169.1 183 53.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-39 167.2 180 54.4
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-39 166.8 175 53.7
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.7e-39 166.8 175 53.7
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.2e-39 166.4 180 53.3
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 4.9e-39 165.2 181 54.7
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 4.9e-39 165.2 175 53.7
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 6.3e-39 164.9 180 54.4
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.8e-38 163.3 174 52.9
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.4e-38 162.9 180 53.3
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 5.4e-38 161.8 177 55.4
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 2.7e-37 159.5 172 57.0
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 4.5e-37 158.7 176 52.8
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 7.7e-37 157.9 163 54.6
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 1.0e-36 157.5 169 51.5
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.0e-36 157.5 168 53.0
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 5.0e-36 155.2 164 53.7
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 1.5e-35 153.7 181 51.4
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 9.5e-35 151.0 175 51.4
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 1.2e-34 150.6 175 50.9
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 2.8e-34 149.4 161 54.7
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 2.8e-34 149.4 168 51.2
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.8e-34 149.4 168 51.2
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 6.1e-34 148.3 159 49.7
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 8.0e-34 147.9 159 49.7
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.0e-33 147.5 173 50.3
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 1.0e-33 147.5 184 48.4
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 1.4e-33 147.1 168 51.8
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 1.8e-33 146.7 175 50.3
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 2.3e-33 146.4 182 48.9
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 4.0e-33 145.6 161 55.3
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 4.0e-33 145.6 181 48.6
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.0e-32 143.3 204 45.1
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 2.6e-32 142.9 176 48.3
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 4.4e-32 142.1 168 48.8
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 4.4e-32 142.1 159 49.7
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 7.5e-32 141.4 173 53.2
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 6.3e-31 138.3 186 47.3
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 2.4e-30 136.3 175 48.6
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 3.2e-30 136.0 186 46.8
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 4.1e-30 135.6 155 52.3
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.1e-30 135.6 155 52.3
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 5.4e-30 135.2 215 42.3
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 9.2e-30 134.4 173 49.1
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 2.0e-29 133.3 170 47.1
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 3.5e-29 132.5 180 47.2
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 4.6e-29 132.1 158 50.6
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 5.9e-29 131.7 158 50.6
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 1.7e-28 130.2 159 49.7
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.7e-28 130.2 165 47.9
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.3e-28 129.8 159 49.7
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 7.3e-27 124.8 188 43.1
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 2.1e-26 123.2 107 65.4
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 2.8e-26 122.9 124 54.8
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 3.6e-26 122.5 175 42.9
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 4.7e-26 122.1 175 46.3
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 8.0e-26 121.3 158 48.1
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 8.0e-26 121.3 195 43.6
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 1.0e-25 120.9 131 56.5
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 4.0e-25 119.0 217 38.2
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 8.9e-25 117.9 174 45.4
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 8.9e-25 117.9 164 43.9
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 1.2e-24 117.5 152 46.1
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 4.9e-23 112.1 170 44.1
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 4.9e-23 112.1 182 43.4
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 4.9e-23 112.1 158 42.4
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 5.4e-22 108.6 164 42.7
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 5.4e-22 108.6 167 41.3
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.2e-21 107.5 178 42.7
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 2.7e-21 106.3 86 74.4
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 3.5e-21 105.9 180 38.9
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 4.6e-21 105.5 182 41.8
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 1.3e-20 104.0 182 41.2
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.0e-20 102.8 201 39.3
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 3.0e-20 102.8 109 57.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.5e-19 99.8 188 39.4
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 9.5e-19 97.8 104 57.7
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 2.8e-18 96.3 173 41.0
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 2.8e-18 96.3 129 49.6
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 4.0e-17 92.4 174 39.7
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 5.2e-17 92.0 180 35.6
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 8.9e-17 91.3 89 51.7
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 2.6e-16 89.7 189 36.5
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 3.4e-16 89.4 175 38.3
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.3e-15 87.4 157 44.6
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-15 87.4 157 44.6
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.9e-15 86.3 109 49.5
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.9e-15 86.3 109 49.5
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 3.7e-15 85.9 178 38.8
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 4.9e-15 85.5 178 37.1
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 4.9e-15 85.5 104 51.9
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 2.4e-14 83.2 137 40.1
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 4.1e-14 82.4 106 50.9
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 4.1e-14 82.4 126 46.8
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 3.5e-13 79.3 72 68.1
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 3.5e-13 79.3 72 68.1
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.9e-12 75.9 68 52.9
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 1.9e-11 73.6 122 44.3
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 5.6e-11 72.0 104 47.1
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 1.6e-10 70.5 68 66.2
arahy.Tifrunner.gnm1.ann1.MN077J Arachis hypogaea HOM05D030690 ORTHO05D006001 1.1e-09 67.8 57 73.7
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.1e-09 67.8 153 41.8
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 2.3e-09 66.6 163 33.7
FAN07G1641 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.2e-08 64.3 141 41.8
FAN17G2161 Fragaria x ananassa HOM05D005061 ORTHO05D006001 9.9e-08 61.2 150 40.0
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 1.7e-07 60.5 47 68.1
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.9e-07 59.7 57 56.1
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 4.9e-07 58.9 162 30.9
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 4.9e-07 58.9 42 57.1
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.9e-06 57.0 69 46.4


User provided reference genes

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