Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 1.0e-75 286.6 139 100.0
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 1.8e-56 222.6 115 93.9
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 1.6e-52 209.5 114 87.7
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 1.2e-50 203.4 115 85.2
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 4.9e-49 198.0 115 82.6
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 4.6e-47 191.4 115 80.0
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.0e-46 190.3 115 77.4
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 8.6e-46 187.2 115 79.1
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 2.1e-44 182.6 109 82.6
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 9.8e-42 173.7 109 78.9
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.3e-41 173.3 115 73.0
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.2e-41 172.6 114 73.7
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 4.6e-39 164.9 113 73.5
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 7.8e-39 164.1 106 70.8
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 2.3e-38 162.5 113 72.6
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 1.5e-37 159.8 109 67.9
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 2.5e-37 159.1 113 65.5
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.3e-37 158.7 114 64.0
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 5.6e-37 157.9 99 73.7
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 9.5e-37 157.1 105 67.6
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 1.6e-36 156.4 105 67.6
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.1e-36 156.0 111 64.9
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 3.6e-36 155.2 97 73.2
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.6e-36 155.2 115 64.3
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.6e-36 155.2 115 64.3
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 3.6e-36 155.2 114 63.2
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 4.7e-36 154.8 99 72.7
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.1e-35 153.7 95 73.7
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.4e-35 153.3 104 66.3
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 1.4e-35 153.3 115 60.0
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 1.8e-35 152.9 112 66.1
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 2.3e-35 152.5 104 69.2
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 2.3e-35 152.5 115 61.7
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 3.1e-35 152.1 114 64.9
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 6.8e-35 151.0 102 66.7
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 1.5e-34 149.8 96 72.9
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 4.4e-34 148.3 103 67.0
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 7.5e-34 147.5 111 63.1
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 9.8e-34 147.1 111 63.1
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 1.3e-33 146.7 115 62.6
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.3e-33 146.7 120 61.7
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.7e-33 146.4 108 63.9
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 1.7e-33 146.4 97 68.0
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 2.2e-33 146.0 102 65.7
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.9e-33 145.6 111 62.2
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 3.7e-33 145.2 107 63.6
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 3.7e-33 145.2 107 63.6
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 4.9e-33 144.8 116 60.3
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 4.9e-33 144.8 110 64.5
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 6.4e-33 144.4 97 63.9
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 6.4e-33 144.4 117 61.5
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 8.3e-33 144.1 115 60.9
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 8.3e-33 144.1 97 67.0
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 8.3e-33 144.1 115 67.0
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.4e-32 143.3 115 65.2
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 1.4e-32 143.3 108 62.0
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.4e-32 142.5 115 65.2
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 2.4e-32 142.5 112 61.6
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.2e-32 142.1 115 65.2
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 4.1e-32 141.7 115 60.9
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.2e-31 140.2 114 64.9
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 2.1e-31 139.4 115 59.1
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 2.7e-31 139.0 111 61.3
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 2.7e-31 139.0 115 60.0
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 3.5e-31 138.7 112 60.7
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 3.5e-31 138.7 111 60.4
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 3.5e-31 138.7 109 67.9
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 6.0e-31 137.9 112 60.7
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 6.0e-31 137.9 109 66.1
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 6.0e-31 137.9 105 63.8
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 6.0e-31 137.9 103 61.2
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 7.8e-31 137.5 116 59.5
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.0e-30 137.1 103 63.1
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 1.3e-30 136.7 96 64.6
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.3e-30 136.7 103 62.1
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.3e-30 136.7 115 57.4
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.7e-30 136.3 106 61.3
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 1.7e-30 136.3 113 58.4
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 3.0e-30 135.6 116 55.2
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 3.9e-30 135.2 103 62.1
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 3.9e-30 135.2 103 62.1
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 3.9e-30 135.2 103 62.1
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 6.6e-30 134.4 106 59.4
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 8.6e-30 134.0 115 62.6
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.9e-29 132.9 112 58.9
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 2.5e-29 132.5 116 56.9
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 2.5e-29 132.5 96 63.5
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 3.3e-29 132.1 115 58.3
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 9.5e-29 130.6 89 69.7
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 1.2e-28 130.2 114 55.3
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.2e-28 130.2 94 62.8
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.2e-28 130.2 100 62.0
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 1.6e-28 129.8 110 58.2
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 1.8e-27 126.3 111 55.9
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 1.8e-27 126.3 119 54.6
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 5.2e-27 124.8 110 51.8
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 6.8e-27 124.4 106 57.5
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 8.9e-27 124.0 101 59.4
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.7e-25 119.8 120 53.3
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 4.1e-24 115.2 107 54.2
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 9.2e-24 114.0 112 51.8
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 2.7e-23 112.5 56 89.3
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 7.8e-23 110.9 110 50.9
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 6.6e-22 107.8 122 50.0
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 1.5e-21 106.7 107 50.5
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 6.2e-20 101.3 100 50.0
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.1e-19 99.0 106 45.3
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 6.8e-19 97.8 108 47.2
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 2.6e-18 95.9 74 62.2
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.3e-17 93.6 91 50.5
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 6.4e-17 91.3 96 49.0
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 1.7e-14 83.2 54 70.4
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 8.7e-14 80.9 59 62.7
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 5.6e-13 78.2 53 62.3
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 4.0e-11 72.0 39 84.6
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.0e-10 69.7 49 69.4
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 5.8e-10 68.2 120 35.0
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.3e-09 67.0 57 57.9
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 1.1e-08 63.9 36 80.6
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 1.4e-08 63.5 91 38.5
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 1.4e-08 63.5 36 77.8
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 4.6e-07 58.5 92 34.8


User provided reference genes

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