Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26202 Trifolium pratense HOM05D002825 ORTHO05D003824 2.1e-121 439.5 300 100.0
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 5.7e-87 325.1 285 58.6
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 9.7e-87 324.3 285 58.2
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 1.3e-86 323.9 284 58.5
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 1.1e-85 320.9 274 60.9
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.2e-84 317.4 285 57.5
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 2.0e-84 316.6 273 59.3
Gohir.A05G405100 Gossypium hirsutum HOM05D002825 ORTHO05D003824 2.3e-80 303.1 273 64.5
Gohir.D04G010500 Gossypium hirsutum HOM05D002825 ORTHO05D003824 3.0e-80 302.8 273 64.5
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 3.7e-78 295.8 279 53.4
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 7.0e-77 291.6 279 52.3
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 1.7e-75 287.0 274 52.9
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 2.9e-75 286.2 279 54.5
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 5.0e-75 285.4 276 53.6
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 5.5e-74 282.0 279 60.9
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 1.6e-73 280.4 273 52.0
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 7.5e-71 271.6 283 50.2
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 2.4e-69 266.5 278 46.4
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 1.5e-66 257.3 278 46.8
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 7.2e-66 255.0 273 45.8
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 2.1e-65 253.4 165 73.3
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 4.7e-65 252.3 279 50.2
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 8.8e-64 248.1 166 70.5
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 2.0e-63 246.9 166 70.5
Psat7g131880 Pisum sativum HOM05D002825 ORTHO05D003824 4.4e-63 245.7 274 74.1
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 7.5e-63 245.0 276 64.1
Lj6g0026509 Lotus japonicus HOM05D002825 ORTHO05D003824 4.9e-62 242.3 166 69.9
MELO3C021840.2 Cucumis melo HOM05D002825 ORTHO05D003824 3.1e-61 239.6 166 67.5
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 4.1e-61 239.2 166 66.3
CsaV3_2G036260 Cucumis sativus L. HOM05D002825 ORTHO05D003824 2.7e-60 236.5 166 66.9
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 2.9e-59 233.0 280 43.2
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 8.6e-59 231.5 166 65.7
Cfa004457 Carpinus fangiana HOM05D002825 ORTHO05D003824 5.6e-58 228.8 166 78.3
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 5.6e-58 228.8 278 42.8
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 4.7e-57 225.7 260 43.8
Haze_10006 Corylus avellana HOM05D002825 ORTHO05D003824 6.1e-57 225.3 166 77.1
Lsat_1_v5_gn_5_91740 Lactuca sativa HOM05D002825 ORTHO05D003824 1.4e-56 224.2 309 39.5
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 1.8e-56 223.8 165 66.1
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 2.0e-55 220.3 255 43.5
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 9.8e-55 218.0 278 41.0
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 3.7e-54 216.1 281 43.4
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 3.2e-53 213.0 165 61.2
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 9.2e-53 211.5 165 60.0
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 1.2e-52 211.1 166 61.4
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 1.2e-52 211.1 166 59.0
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 2.0e-52 210.3 166 59.6
TWI63G1692 Tripterygium wilfordii HOM05D002825 ORTHO05D003824 2.7e-52 209.9 166 62.0
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 4.3e-50 202.6 166 58.4
Actinidia01627 Actinidia chinensis HOM05D002825 ORTHO05D003824 1.6e-49 200.7 238 51.7
Lj9A281T41 Lonicera japonica HOM05D002825 ORTHO05D003824 3.6e-49 199.5 166 55.4
Hund15406 Selenicereus undatus HOM05D002825 ORTHO05D003824 1.8e-48 197.2 165 58.8
CARHR010370 Cardamine hirsuta HOM05D002825 ORTHO05D003824 2.3e-48 196.8 166 54.2
Manes.07G028200 Manihot esculenta HOM05D002825 ORTHO05D003824 2.3e-48 196.8 166 58.4
Rhsim05G0174700 Rhododendron simsii HOM05D002825 ORTHO05D003824 5.2e-48 195.7 277 46.2
ECA236G2567 Erigeron canadensis HOM05D002825 ORTHO05D003824 6.8e-48 195.3 264 40.5
THA.LOC104823676 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 1.5e-47 194.1 172 55.2
C05p08380 Brassica napus HOM05D002825 ORTHO05D003824 7.5e-47 191.8 166 53.6
BolC5t29589H Brassica oleracea HOM05D002825 ORTHO05D003824 7.5e-47 191.8 166 53.6
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 2.2e-46 190.3 166 51.2
C08p49080 Brassica napus HOM05D002825 ORTHO05D003824 2.2e-46 190.3 166 51.2
Aa31LG1G4670 Aethionema arabicum HOM05D002825 ORTHO05D003824 3.7e-46 189.5 166 54.2
Carub.0001s0966 Capsella rubella HOM05D002825 ORTHO05D003824 3.7e-46 189.5 166 53.6
Hma1.2p1_0052F.1_g029920 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 3.7e-46 189.5 170 53.5
Sc06g0000730 Simmondsia chinensis HOM05D002825 ORTHO05D003824 8.3e-46 188.3 166 66.3
Ah.11g046920 Amaranthus hybridus HOM05D002825 ORTHO05D003824 1.4e-45 187.6 165 67.9
AL1G21000 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.4e-45 187.6 166 52.4
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 1.9e-45 187.2 166 51.2
Sp1g08860 Schrenkiella parvula HOM05D002825 ORTHO05D003824 1.9e-45 187.2 166 51.2
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 3.2e-45 186.4 165 55.8
A06p06900 Brassica napus HOM05D002825 ORTHO05D003824 3.2e-45 186.4 166 52.4
BraA06t23906Z Brassica rapa HOM05D002825 ORTHO05D003824 3.2e-45 186.4 166 52.4
A09p65140 Brassica napus HOM05D002825 ORTHO05D003824 4.1e-45 186.0 166 50.6
BraA09t41857Z Brassica rapa HOM05D002825 ORTHO05D003824 4.1e-45 186.0 166 50.6
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 1.6e-44 184.1 166 51.2
Rhsim05G0116200 Rhododendron simsii HOM05D002825 ORTHO05D003824 1.6e-44 184.1 275 64.7
BraA08t35321Z Brassica rapa HOM05D002825 ORTHO05D003824 2.7e-44 183.3 166 51.2
Sc19g0003420 Simmondsia chinensis HOM05D002825 ORTHO05D003824 2.7e-44 183.3 166 68.1
THA.LOC104823675 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 3.5e-44 183.0 172 52.9
Atru.chr6.351 Acer truncatum HOM05D002825 ORTHO05D003824 6.0e-44 182.2 166 53.0
Atru.chr6.402 Acer truncatum HOM05D002825 ORTHO05D003824 6.0e-44 182.2 166 53.0
AT1G10270 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 6.0e-44 182.2 166 50.6
AUR62000337 Chenopodium quinoa HOM05D002825 ORTHO05D003824 6.0e-44 182.2 164 60.4
Atru.chr13.1188 Acer truncatum HOM05D002825 ORTHO05D003824 7.8e-44 181.8 166 54.2
C08p13530 Brassica napus HOM05D002825 ORTHO05D003824 1.7e-43 180.6 166 49.4
BolC8t48989H Brassica oleracea HOM05D002825 ORTHO05D003824 1.7e-43 180.6 166 49.4
DCAR_003286 Daucus carota HOM05D002825 ORTHO05D003824 3.0e-43 179.9 170 50.6
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 8.6e-43 178.3 165 52.7
Peaxi162Scf00011g01628 Petunia axillaris HOM05D002825 ORTHO05D003824 1.5e-42 177.6 165 49.7
TAR628G0533 Trochodendron aralioides HOM05D002825 ORTHO05D003824 1.5e-42 177.6 167 52.1
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 7.3e-42 175.3 278 38.5
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 7.3e-42 175.3 278 38.5
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 2.1e-41 173.7 278 38.1
MSTRG.5190 Avicennia marina HOM05D002825 ORTHO05D003824 3.6e-41 172.9 277 53.1
Oeu044734.1 Olea europaea HOM05D002825 ORTHO05D003824 4.7e-41 172.6 166 47.6
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 1.1e-40 171.4 278 38.5
CSS0030972 Camellia sinensis var. sinensis HOM05D002825 ORTHO05D003824 1.2e-39 167.9 166 50.6
Cc02_g23470 Coffea canephora HOM05D002825 ORTHO05D003824 1.2e-39 167.9 166 50.6
TAR376G0418 Trochodendron aralioides HOM05D002825 ORTHO05D003824 1.5e-39 167.5 167 50.3
Migut.N00860 Erythranthe guttata HOM05D002825 ORTHO05D003824 9.8e-39 164.9 166 45.8
Oeu000151.1 Olea europaea HOM05D002825 ORTHO05D003824 1.4e-37 161.0 166 45.8
Medtr7g069290 Medicago truncatula HOM05D002825 ORTHO05D003824 3.2e-37 159.8 232 40.5
Actinidia26189 Actinidia chinensis HOM05D000331 ORTHO05D003399 7.1e-37 158.7 166 60.2
BcaC07g38540 Brassica carinata HOM05D002825 ORTHO05D003824 7.1e-37 158.7 166 45.8
TPR.G40676 Trifolium pratense HOM05D002825 ORTHO05D003824 7.1e-37 158.7 155 67.1
Medtr7g069270 Medicago truncatula HOM05D002825 ORTHO05D003824 4.6e-36 156.0 240 39.6
SGA_v2.0_scaffold100G29546 Striga asiatica HOM05D002825 ORTHO05D003824 3.9e-35 152.9 169 45.6
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 6.6e-35 152.1 166 56.6
HanXRQChr08g0228491 Helianthus annuus HOM05D002825 ORTHO05D003824 3.3e-34 149.8 281 33.1
QL02p102471 Quercus lobata HOM05D002825 ORTHO05D003824 6.8e-32 142.1 165 58.8
QL02p103093 Quercus lobata HOM05D002825 ORTHO05D003824 6.8e-32 142.1 165 58.8
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 2.6e-31 140.2 77 84.4
Prupe.1G583600 Prunus persica HOM05D002825 ORTHO05D003824 2.6e-31 140.2 78 82.1
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 3.2e-29 133.3 277 46.6
Dinv29621 Davidia involucrata HOM05D002825 ORTHO05D003824 3.9e-27 126.3 78 71.8
CDE05G3421 Ceratophyllum demersum HOM05D002825 ORTHO05D003824 1.1e-24 118.2 304 44.1
PSO339G5268 Papaver somniferum HOM05D002825 ORTHO05D003824 8.9e-24 115.2 131 43.5
HPP92_003447 Vanilla planifolia HOM05D002825 ORTHO05D003824 8.9e-24 115.2 159 39.0
unitig_699.g19843 Utricularia gibba HOM05D002825 ORTHO05D003824 1.2e-23 114.8 234 49.6
MBI16_g21730_MAGBIO Magnolia biondii HOM05D002825 ORTHO05D003824 3.4e-23 113.2 152 40.8
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 7.6e-23 112.1 166 36.7
Migut.N00859 Erythranthe guttata HOM05D002825 ORTHO05D003824 9.9e-23 111.7 59 86.4
Medtr7g069300 Medicago truncatula HOM05D002825 ORTHO05D003824 6.4e-22 109.0 279 29.7
QL07p020316 Quercus lobata HOM05D002825 ORTHO05D003824 1.4e-21 107.8 142 45.1
Aqoxy6G01599 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 3.5e-20 103.2 299 25.8
Lj4g0012938 Lotus japonicus HOM05D002825 ORTHO05D003824 1.7e-19 100.9 62 75.8
Medtr7g069310 Medicago truncatula HOM05D002825 ORTHO05D003824 5.1e-19 99.4 122 45.9
PSO384G0639 Papaver somniferum HOM05D002825 ORTHO05D003824 1.1e-18 98.2 80 55.0
HPP92_001276 Vanilla planifolia HOM05D002825 ORTHO05D003824 1.6e-17 94.4 175 29.1
Oeu002155.1 Olea europaea HOM05D002825 ORTHO05D003824 2.8e-17 93.6 78 53.8
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.8e-16 90.9 244 29.5
Medtr7g069230 Medicago truncatula HOM05D002825 ORTHO05D003824 2.6e-15 87.0 126 40.5
C03p30090 Brassica napus HOM05D002825 ORTHO05D003824 3.4e-15 86.7 193 34.7
BcaC01g05136 Brassica carinata HOM05D002825 ORTHO05D003824 1.3e-14 84.7 193 34.2
BolC3t15358H Brassica oleracea HOM05D002825 ORTHO05D003824 1.3e-14 84.7 193 34.2
AL5G42790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.7e-14 84.3 114 42.1
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 2.2e-14 84.0 112 42.9
BraA03t11722Z Brassica rapa HOM05D002825 ORTHO05D003824 3.8e-14 83.2 192 33.3
Carub.0005s2724 Capsella rubella HOM05D002825 ORTHO05D003824 3.8e-14 83.2 255 25.9
CARHR170890 Cardamine hirsuta HOM05D002825 ORTHO05D003824 3.8e-14 83.2 114 42.1
BcaC01g05137 Brassica carinata HOM05D002825 ORTHO05D003824 1.1e-13 81.6 114 41.2
BolC3t15357H Brassica oleracea HOM05D002825 ORTHO05D003824 1.1e-13 81.6 114 41.2
BcaB01g03268 Brassica carinata HOM05D002825 ORTHO05D003824 1.4e-13 81.3 200 33.5
A03p25220 Brassica napus HOM05D002825 ORTHO05D003824 1.6e-12 77.8 179 34.1
AL1G60310 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 3.5e-12 76.6 112 42.0
AL3G34220 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 3.5e-12 76.6 240 27.1
AL3G34230 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 3.5e-12 76.6 240 27.1
ATR1089G152 Amborella trichopoda HOM05D002825 ORTHO05D003824 6.0e-12 75.9 232 25.4
Aqoxy7G01216 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 1.3e-11 74.7 77 44.2
BcaC01g05138 Brassica carinata HOM05D002825 ORTHO05D003824 2.3e-11 73.9 107 41.1
Carub.0007s2495 Capsella rubella HOM05D002825 ORTHO05D003824 3.0e-11 73.6 178 30.3
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 6.7e-11 72.4 232 28.0
AL4G44540 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.1e-10 71.6 71 52.1
MD08G1246600 Malus domestica HOM05D002825 ORTHO05D003824 1.1e-10 71.6 41 80.5
Thhalv10023949m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 1.5e-10 71.2 223 27.8
Zm00001eb047560 Zea mays HOM05D002825 ORTHO05D003824 1.5e-10 71.2 167 40.1
CARHR140100 Cardamine hirsuta HOM05D002825 ORTHO05D003824 1.9e-10 70.9 180 28.9
BraA03t11721Z Brassica rapa HOM05D002825 ORTHO05D003824 2.5e-10 70.5 107 39.3
C03p30080 Brassica napus HOM05D002825 ORTHO05D003824 4.3e-10 69.7 114 37.7
AT3G60980 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 5.6e-10 69.3 245 24.9
C01p48580 Brassica napus HOM05D002825 ORTHO05D003824 7.4e-10 68.9 176 28.4
BolC1t04813H Brassica oleracea HOM05D002825 ORTHO05D003824 7.4e-10 68.9 176 28.4
AL5G43690 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 9.6e-10 68.6 252 25.0
BcaNung04658 Brassica carinata HOM05D002825 ORTHO05D003824 9.6e-10 68.6 245 25.3
Carub.0004s2842 Capsella rubella HOM05D002825 ORTHO05D011549 9.6e-10 68.6 213 27.2
Carub.0004s2841 Capsella rubella HOM05D002825 ORTHO05D003824 1.3e-09 68.2 70 48.6
BcaC09g48563 Brassica carinata HOM05D002825 ORTHO05D003824 3.6e-09 66.6 67 47.8
Aqoxy5G04292 Aquilegia oxysepala HOM05D006156 ORTHO05D007699 8.1e-09 65.5 282 41.1
C07p48550 Brassica napus HOM05D002825 ORTHO05D003824 8.1e-09 65.5 199 27.1
BcaC06g33535 Brassica carinata HOM05D002825 ORTHO05D003824 1.1e-08 65.1 199 27.1
AL5G43830 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 2.4e-08 63.9 111 35.1
BolC7t45363H Brassica oleracea HOM05D002825 ORTHO05D003824 3.1e-08 63.5 210 26.2
Carub.0004s2572 Capsella rubella HOM05D002825 ORTHO05D003824 3.1e-08 63.5 111 39.6
AL7G38410 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 6.9e-08 62.4 166 35.5
AL5G43650 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 9.0e-08 62.0 254 24.0
BcaC01g05127 Brassica carinata HOM05D002825 ORTHO05D003824 1.5e-07 61.2 192 30.7
Hma1.2p1_0062F.1_g034310 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 4.5e-07 59.7 86 38.4
Hma1.2p1_0604F.1_g187753 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 4.5e-07 59.7 86 38.4
C04p01010 Brassica napus HOM05D002825 ORTHO05D011549 7.6e-07 58.9 69 40.6
BcaC02g12824 Brassica carinata HOM05D002825 ORTHO05D011549 2.2e-06 57.4 69 40.6
BcaC02g12622 Brassica carinata HOM05D002825 ORTHO05D011549 3.8e-06 56.6 69 39.1
A05p00840 Brassica napus HOM05D002825 ORTHO05D011549 3.8e-06 56.6 69 37.7
BolC4t21754H Brassica oleracea HOM05D002825 ORTHO05D011549 3.8e-06 56.6 69 39.1
BraA05t19087Z Brassica rapa HOM05D002825 ORTHO05D011549 3.8e-06 56.6 69 37.7
AL5G29610 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 4.9e-06 56.2 252 22.6
BcaB02g09551 Brassica carinata HOM05D002825 ORTHO05D011549 4.9e-06 56.2 69 40.6
Nitab4.5_0007167g0040 Nicotiana tabacum HOM05D006156 ORTHO05D007699 6.4e-06 55.8 175 26.9
BolC4t21716H Brassica oleracea HOM05D002825 ORTHO05D011549 8.4e-06 55.5 70 41.4
CAN.G481.4 Capsicum annuum HOM05D006156 ORTHO05D007699 8.4e-06 55.5 178 26.4
HPP92_008817 Vanilla planifolia HOM05D006156 ORTHO05D007699 8.4e-06 55.5 76 36.8


User provided reference genes

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