Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 3.1e-262 907.9 451 100.0
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 1.1e-246 856.3 451 94.2
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 1.8e-246 855.5 452 93.8
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 3.4e-245 851.3 451 93.3
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 2.3e-233 812.0 451 89.4
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.5e-232 809.3 452 89.8
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 1.3e-231 806.2 451 88.2
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 1.3e-231 806.2 451 88.9
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 7.7e-229 797.0 450 88.0
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 1.4e-225 786.2 454 84.1
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 2.0e-224 782.3 458 86.2
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 1.3e-223 779.6 460 85.7
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 1.2e-221 773.1 460 85.0
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 9.4e-219 763.5 451 82.3
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 2.7e-218 761.9 454 82.8
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 4.7e-218 761.1 452 83.0
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 8.0e-218 760.4 453 81.7
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 8.0e-218 760.4 454 82.4
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.0e-217 760.0 451 82.5
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 1.8e-217 759.2 453 82.8
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 5.2e-217 757.7 454 82.4
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 6.7e-217 757.3 454 82.8
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 6.7e-217 757.3 461 82.2
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.6e-216 755.4 460 83.0
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.3e-215 753.1 456 83.1
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 1.3e-215 753.1 456 83.1
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 1.3e-215 753.1 454 83.0
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 1.7e-215 752.7 461 81.3
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 6.3e-215 750.7 452 82.3
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 1.4e-214 749.6 450 82.4
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 1.8e-214 749.2 453 82.1
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 3.1e-214 748.4 453 81.7
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 3.5e-213 745.0 455 81.5
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 4.5e-213 744.6 454 81.7
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 7.7e-213 743.8 459 80.4
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 1.0e-212 743.4 456 81.4
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 2.2e-212 742.3 472 79.4
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 3.8e-212 741.5 456 80.7
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 1.5e-211 739.6 454 80.8
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 1.9e-211 739.2 451 80.5
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 1.9e-211 739.2 517 72.9
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 3.2e-211 738.4 471 79.0
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 2.7e-210 735.3 472 79.0
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 6.1e-210 734.2 452 80.8
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 1.0e-209 733.4 454 81.1
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 2.3e-209 732.3 459 80.6
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 3.0e-209 731.9 469 78.3
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 4.0e-209 731.5 452 80.3
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 6.8e-209 730.7 452 80.5
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 3.4e-208 728.4 459 80.0
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 7.5e-208 727.2 456 80.3
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 1.7e-207 726.1 450 80.2
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 7.0e-206 720.7 456 78.9
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 1.6e-205 719.5 452 80.5
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 4.5e-205 718.0 453 80.8
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.7e-204 716.1 448 79.2
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 1.1e-203 713.4 453 78.8
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 4.2e-203 711.4 426 82.9
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 3.6e-202 708.4 458 76.9
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 5.7e-200 701.0 456 78.7
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 9.8e-200 700.3 431 81.7
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 1.7e-199 699.5 405 84.7
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 2.2e-199 699.1 456 77.6
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 2.8e-199 698.7 453 77.7
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 6.3e-199 697.6 431 81.2
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 8.3e-199 697.2 455 77.6
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 2.4e-198 695.7 453 77.3
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 4.1e-198 694.9 456 77.6
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 5.4e-198 694.5 455 78.2
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 2.7e-197 692.2 452 77.2
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 1.0e-196 690.3 449 76.8
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 6.6e-196 687.6 450 77.1
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 1.9e-195 686.0 450 76.9
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 3.3e-195 685.3 451 76.7
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 4.3e-195 684.9 456 76.8
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 7.3e-195 684.1 451 76.5
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 9.8e-192 673.7 455 76.9
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.3e-191 673.3 454 75.3
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 2.2e-191 672.5 457 75.7
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 9.2e-190 667.2 450 73.3
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 1.2e-189 666.8 461 75.5
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 2.7e-189 665.6 465 75.1
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 8.6e-188 660.6 362 89.2
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 1.5e-187 659.8 461 73.3
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.6e-186 656.4 357 89.6
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 1.3e-183 646.7 460 73.0
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.7e-183 646.4 452 75.0
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 4.7e-178 628.2 450 71.8
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 5.2e-177 624.8 358 84.4
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 8.9e-177 624.0 397 75.6
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 2.1e-173 612.8 332 89.8
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.9e-166 589.7 332 85.8
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 7.8e-165 584.3 429 67.6
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 7.3e-163 577.8 407 68.8
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 2.8e-162 575.9 416 68.5
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 1.3e-159 567.0 353 81.0
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 2.2e-159 566.2 357 79.3
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 4.6e-157 558.5 456 66.4
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.4e-153 547.0 417 70.3
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 1.3e-151 540.4 385 68.3
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 6.4e-151 538.1 311 84.9
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 5.5e-142 508.4 413 61.7
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 3.9e-140 502.3 309 79.9
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 4.8e-138 495.4 279 86.4
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 4.5e-136 488.8 312 80.8
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 9.7e-131 471.1 318 74.2
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.6e-130 470.3 429 60.4
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 1.9e-126 456.8 413 60.8
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 7.9e-125 451.4 253 86.2
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 7.9e-125 451.4 253 86.2
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.1e-121 441.0 332 68.1
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 4.2e-110 402.5 412 50.0
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 2.7e-88 330.1 242 71.9
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 4.3e-78 296.2 318 48.1
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 1.9e-73 280.8 146 94.5
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 2.1e-64 250.8 337 43.0
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 6.4e-58 229.2 401 36.4
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 3.3e-54 216.9 383 37.6
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 9.2e-49 198.7 349 35.8
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.7e-47 194.5 117 82.1
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.7e-47 194.5 341 35.2
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 8.1e-45 185.7 149 63.1
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 5.8e-43 179.5 102 83.3
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 1.4e-41 174.9 378 31.0
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 7.8e-40 169.1 100 82.0
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 9.6e-38 162.2 96 84.4
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 4.8e-21 106.7 51 88.2
MD09G1061200 Malus domestica HOM05D005960 ORTHO05D007537 2.6e-19 100.9 87 56.3
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 9.7e-14 82.4 45 93.3
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 3.4e-11 73.9 150 31.3
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 6.1e-08 63.2 38 81.6
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 1.4e-07 62.0 42 73.8


User provided reference genes

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