Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 3.9e-99 364.8 181 100.0
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 3.8e-86 321.6 183 89.6
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 7.2e-77 290.8 189 78.3
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 2.1e-76 289.3 189 77.8
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 2.3e-75 285.8 187 78.6
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 8.2e-73 277.3 187 76.5
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 8.2e-73 277.3 187 76.5
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 8.2e-65 250.8 187 71.7
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 7.0e-64 247.7 187 68.4
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 2.9e-62 242.3 187 67.9
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 6.5e-62 241.1 186 67.7
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 1.9e-61 239.6 187 66.3
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 1.6e-60 236.5 175 72.0
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 2.0e-58 229.6 187 64.2
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 7.7e-55 217.6 185 62.2
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 5.5e-53 211.5 185 60.5
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 2.6e-50 202.6 188 59.0
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 2.3e-46 189.5 184 57.1
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 1.1e-45 187.2 179 55.9
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 3.3e-45 185.7 179 55.3
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 7.2e-45 184.5 181 56.4
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 9.5e-45 184.1 184 51.1
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 2.1e-44 183.0 176 56.8
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 2.8e-44 182.6 186 54.3
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 8.0e-44 181.0 175 55.4
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 2.3e-43 179.5 181 56.4
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 2.3e-43 179.5 184 54.3
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 3.0e-43 179.1 187 52.4
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.2e-42 177.2 179 51.4
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 3.4e-42 175.6 183 53.6
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 9.8e-42 174.1 168 57.1
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.3e-41 173.7 170 56.5
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 1.7e-41 173.3 168 57.1
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 1.7e-41 173.3 168 57.1
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 2.2e-41 172.9 185 51.4
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 2.2e-41 172.9 186 52.7
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 2.8e-41 172.6 187 51.3
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 1.8e-40 169.9 176 53.4
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 4.1e-40 168.7 176 53.4
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 4.1e-40 168.7 184 51.1
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 5.4e-40 168.3 180 53.9
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.2e-39 167.2 180 50.6
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 1.2e-39 167.2 181 54.7
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 1.6e-39 166.8 180 51.1
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 2.7e-39 166.0 187 50.3
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 3.5e-39 165.6 185 50.3
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 3.5e-39 165.6 179 52.0
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 1.0e-38 164.1 186 47.8
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 1.7e-38 163.3 191 47.1
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 2.3e-38 162.9 168 54.2
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 2.3e-38 162.9 181 54.7
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.3e-38 162.9 184 48.4
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 2.9e-38 162.5 184 47.8
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 2.9e-38 162.5 186 46.8
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 2.9e-38 162.5 186 47.3
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 6.6e-38 161.4 190 49.5
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 6.6e-38 161.4 184 47.8
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 1.1e-37 160.6 190 47.4
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 1.1e-37 160.6 181 54.7
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 1.5e-37 160.2 182 51.1
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 1.5e-37 160.2 184 48.9
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.9e-37 159.8 163 54.0
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 3.3e-37 159.1 184 49.5
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 4.3e-37 158.7 186 45.7
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 4.3e-37 158.7 187 49.2
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 1.6e-36 156.8 186 47.3
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 4.7e-36 155.2 184 47.8
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 8.0e-36 154.5 190 46.8
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 1.0e-35 154.1 184 47.3
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 1.0e-35 154.1 178 47.8
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 4.0e-35 152.1 184 47.3
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 4.0e-35 152.1 201 45.3
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 6.8e-35 151.4 190 47.4
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 8.9e-35 151.0 184 46.7
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 1.2e-34 150.6 149 50.3
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 7.5e-34 147.9 167 46.7
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 9.8e-34 147.5 184 47.3
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 1.3e-33 147.1 184 45.7
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.3e-33 147.1 184 45.7
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 2.9e-33 146.0 184 45.1
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 3.7e-33 145.6 177 46.9
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 4.9e-33 145.2 181 45.9
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 1.1e-32 144.1 188 46.8
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.4e-32 142.9 219 40.2
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 3.2e-32 142.5 175 46.3
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 3.5e-31 139.0 184 45.1
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 4.6e-31 138.7 187 44.4
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 1.0e-30 137.5 185 44.3
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 2.3e-30 136.3 187 42.8
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 3.0e-30 136.0 175 44.6
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 3.0e-30 136.0 177 44.1
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 5.0e-30 135.2 182 45.6
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 6.6e-30 134.8 176 46.0
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 6.6e-30 134.8 183 45.4
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 2.5e-29 132.9 179 44.7
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 3.3e-29 132.5 175 43.4
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 5.6e-29 131.7 180 42.2
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 1.2e-28 130.6 125 57.6
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 6.2e-28 128.3 100 58.0
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 5.2e-27 125.2 170 41.8
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 5.2e-27 125.2 169 40.8
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 4.1e-24 115.5 172 40.1
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 1.0e-22 110.9 174 38.5
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 2.3e-22 109.8 163 41.7
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 3.0e-22 109.4 84 59.5
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 1.5e-21 107.1 172 37.8
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.4e-19 100.5 167 37.1
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 5.2e-19 98.6 196 35.2
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 8.6e-14 81.3 89 48.3
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 2.1e-12 76.6 69 52.2
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 2.8e-12 76.3 74 52.7
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 8.1e-12 74.7 79 45.6
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 6.8e-11 71.6 112 40.2
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 3.4e-10 69.3 71 49.3
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 1.7e-09 67.0 76 53.9
C08p42990 Brassica napus HOM05D004340 ORTHO05D014919 2.9e-09 66.2 113 37.2
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 2.9e-09 66.2 139 33.1
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 1.1e-08 64.3 90 44.4
SEGI_26412 Sequoiadendron giganteum HOM05D004340 ORTHO05D014919 4.2e-08 62.4 93 35.5
SHI21661 Sapria himalayana HOM05D004340 ORTHO05D006363 6.0e-07 58.5 91 39.6
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 3.0e-06 56.2 174 27.0
BolC8t51851H Brassica oleracea HOM05D004340 ORTHO05D014919 3.9e-06 55.8 112 35.7


User provided reference genes

Program Settings