Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26173 Trifolium pratense HOM05D003021 ORTHO05D002235 5.8e-134 481.1 281 100.0
Medtr6g013485 Medicago truncatula HOM05D003021 ORTHO05D002235 6.0e-54 215.3 205 68.3
Ca_04869_v3 Cicer arietinum L. HOM05D003021 ORTHO05D002235 3.5e-46 189.5 236 58.5
Psat6g146680 Pisum sativum HOM05D003021 ORTHO05D002235 1.2e-41 174.5 208 63.9
Glyma.13G058900 Glycine max HOM05D003021 ORTHO05D002235 3.2e-39 166.4 217 57.6
Glyma.19G027500 Glycine max HOM05D003021 ORTHO05D002235 6.6e-37 158.7 213 53.5
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 1.1e-34 151.4 184 52.7
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 3.0e-29 133.3 212 44.8
VMungo0464G0637 Vigna mungo HOM05D003021 ORTHO05D002235 3.0e-29 133.3 212 51.4
Lalb_Chr06g0175101 Lupinus albus HOM05D003021 ORTHO05D002235 2.8e-27 126.7 221 44.8
Phvul.004G033600 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 3.4e-25 119.8 215 48.8
Glyma.18G264100 Glycine max HOM05D003021 ORTHO05D002235 3.8e-24 116.3 217 42.9
Glyma.08G241800 Glycine max HOM05D003021 ORTHO05D002235 5.4e-23 112.5 212 42.0
Phvul.008G035900 Phaseolus vulgaris HOM05D003021 ORTHO05D002235 2.5e-20 103.6 206 43.7
VMungo1383G2482 Vigna mungo HOM05D003021 ORTHO05D002235 1.3e-16 91.3 204 39.7
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 6.4e-16 89.0 202 37.1
CiPaw.04G058300 Carya illinoinensis HOM05D003021 ORTHO05D002235 3.5e-14 83.2 217 32.7
Cfa007625 Carpinus fangiana HOM05D003021 ORTHO05D002235 2.3e-13 80.5 222 32.4
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 3.0e-13 80.1 191 34.6
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 3.9e-13 79.7 114 42.1
Psat3g200600 Pisum sativum HOM05D003021 ORTHO05D002235 8.7e-13 78.6 163 36.2
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 1.1e-12 78.2 70 55.7
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 7.4e-12 75.5 70 52.9
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 9.6e-12 75.1 108 44.4
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 1.3e-11 74.7 78 51.3
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 1.6e-11 74.3 118 37.3
Medtr7g012290 Medicago truncatula HOM05D003021 ORTHO05D002235 3.7e-11 73.2 225 32.9
FvH4_6g47500 Fragaria vesca HOM05D003021 ORTHO05D002235 6.2e-11 72.4 229 32.3
TPR.G33474 Trifolium pratense HOM05D003021 ORTHO05D002235 6.2e-11 72.4 91 52.7
GSVIVG01011491001 Vitis vinifera HOM05D003021 ORTHO05D002235 6.2e-11 72.4 72 50.0
Psat3g200560 Pisum sativum HOM05D003021 ORTHO05D002235 1.1e-10 71.6 206 33.0
Lalb_Chr10g0093201 Lupinus albus HOM05D003021 ORTHO05D002235 1.4e-10 71.2 265 32.5
Sed0005734 Sechium edule HOM05D003021 ORTHO05D002235 1.4e-10 71.2 75 50.7
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 2.4e-10 70.5 118 36.4
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 3.1e-10 70.1 195 32.8
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 4.0e-10 69.7 234 39.3
FAN09G3860 Fragaria x ananassa HOM05D003021 ORTHO05D002235 5.3e-10 69.3 226 31.0
Cpa.g.sc14.145 Carica papaya HOM05D003021 ORTHO05D002235 6.9e-10 68.9 78 48.7
FAN14G5480 Fragaria x ananassa HOM05D003021 ORTHO05D002235 6.9e-10 68.9 217 32.7
TAR622G0013 Trochodendron aralioides HOM05D003021 ORTHO05D002235 9.0e-10 68.6 188 32.4
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 1.5e-09 67.8 73 49.3
CsaV3_5G038410 Cucumis sativus L. HOM05D003021 ORTHO05D002235 2.0e-09 67.4 63 52.4
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 2.6e-09 67.0 61 55.7
Nn4g23344 Nelumbo nucifera HOM05D003021 ORTHO05D002235 2.6e-09 67.0 103 40.8
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 3.4e-09 66.6 297 27.6
COL.COLO4_21376 Corchorus olitorius HOM05D003021 ORTHO05D002235 3.4e-09 66.6 78 46.2
QL02p039488 Quercus lobata HOM05D003021 ORTHO05D002235 4.5e-09 66.2 109 40.4
FAN05G2768 Fragaria x ananassa HOM05D003021 ORTHO05D002235 5.8e-09 65.9 214 30.8
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 5.8e-09 65.9 71 46.5
THA.LOC104805496 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 5.8e-09 65.9 110 40.9
Sed0010326 Sechium edule HOM05D003021 ORTHO05D002235 7.6e-09 65.5 68 51.5
Hma1.2p1_0221F.1_g093100 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 9.9e-09 65.1 126 39.7
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 9.9e-09 65.1 203 34.0
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 1.3e-08 64.7 62 53.2
THA.LOC104823896 Tarenaya hassleriana HOM05D003021 ORTHO05D002235 1.7e-08 64.3 78 47.4
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 2.9e-08 63.5 55 54.5
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 2.9e-08 63.5 121 34.7
BcaB06g27294 Brassica carinata HOM05D003021 ORTHO05D002235 4.9e-08 62.8 104 38.5
C04p45710 Brassica napus HOM05D003021 ORTHO05D002235 4.9e-08 62.8 104 38.5
BolC4t26155H Brassica oleracea HOM05D003021 ORTHO05D002235 4.9e-08 62.8 104 38.5
Thhalv10027728m.g Eutrema salsugineum HOM05D003021 ORTHO05D002235 4.9e-08 62.8 113 34.5
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 4.9e-08 62.8 89 41.6
Aa31LG9G16610 Aethionema arabicum HOM05D003021 ORTHO05D002235 6.4e-08 62.4 110 36.4
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 8.4e-08 62.0 86 39.5
AL6G26280 Arabidopsis lyrata HOM05D009950 ORTHO05D002235 1.1e-07 61.6 86 41.9
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 1.1e-07 61.6 77 45.5
SGA_v2.0_scaffold52G19187 Striga asiatica HOM05D003021 ORTHO05D002235 3.2e-07 60.1 79 44.3
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 5.5e-07 59.3 42 66.7
CAN.G206.199 Capsicum annuum HOM05D003021 ORTHO05D002235 7.1e-07 58.9 72 38.9
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 7.1e-07 58.9 111 39.6
Atru.chr9.291 Acer truncatum HOM05D003021 ORTHO05D002235 9.3e-07 58.5 122 31.1
ATR0111G037 Amborella trichopoda HOM05D003021 ORTHO05D002235 9.3e-07 58.5 76 44.7
ClCG11G004640 Citrullus lanatus HOM05D003021 ORTHO05D002235 9.3e-07 58.5 68 42.6
AL7G50940 Arabidopsis lyrata HOM05D003021 ORTHO05D002235 1.2e-06 58.2 88 40.9
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 1.6e-06 57.8 83 45.8
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 1.6e-06 57.8 70 45.7
Sp7g02590 Schrenkiella parvula HOM05D003021 ORTHO05D002235 1.6e-06 57.8 230 27.4
THA.LOC104822343 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 1.6e-06 57.8 116 36.2
CAN.G1627.5 Capsicum annuum HOM05D009846 ORTHO05D000368 2.1e-06 57.4 72 37.5
CARHR197890 Cardamine hirsuta HOM05D009950 ORTHO05D002235 2.1e-06 57.4 82 45.1
AT5G15430 Arabidopsis thaliana HOM05D009950 ORTHO05D002235 2.7e-06 57.0 86 41.9
Peaxi162Scf00013g00052 Petunia axillaris HOM05D003021 ORTHO05D002235 2.7e-06 57.0 59 54.2
Rhsim12G0153000 Rhododendron simsii HOM05D003021 ORTHO05D002235 2.7e-06 57.0 70 41.4
AT5G39380 Arabidopsis thaliana HOM05D003021 ORTHO05D002235 3.5e-06 56.6 113 35.4
CAN.G638.54 Capsicum annuum HOM05D009846 ORTHO05D000368 3.5e-06 56.6 56 46.4
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 3.5e-06 56.6 247 27.1
Os03g0211400 Oryza sativa ssp. japonica HOM05D003021 ORTHO05D002235 3.5e-06 56.6 65 44.6
Sp6g28670 Schrenkiella parvula HOM05D009950 ORTHO05D002235 3.5e-06 56.6 86 40.7
Solyc02g088580.1 Solanum lycopersicum HOM05D003021 ORTHO05D002235 3.5e-06 56.6 82 40.2
Sopen02g033310 Solanum pennellii HOM05D003021 ORTHO05D002235 3.5e-06 56.6 82 40.2
PGSC0003DMG400001352 Solanum tuberosum HOM05D003021 ORTHO05D002235 3.5e-06 56.6 82 40.2
Carub.0007s3655 Capsella rubella HOM05D003021 ORTHO05D002235 4.6e-06 56.2 83 38.6
BraA04t16870Z Brassica rapa HOM05D003021 ORTHO05D002235 6.0e-06 55.8 106 34.0
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 6.0e-06 55.8 144 30.6
QL10p018571 Quercus lobata HOM05D003021 ORTHO05D002235 6.0e-06 55.8 259 27.0
Nitab4.5_0008213g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 7.9e-06 55.5 72 37.5


User provided reference genes

Program Settings