Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 1.1e-127 459.9 224 100.0
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 1.4e-82 310.1 171 86.5
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 8.0e-78 294.3 173 82.7
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 1.4e-77 293.5 173 82.7
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 1.5e-76 290.0 170 79.4
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 7.5e-76 287.7 169 82.8
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 2.0e-73 279.6 166 80.1
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.6e-70 270.0 169 76.9
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 1.8e-69 266.5 165 75.2
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 2.0e-68 263.1 153 77.8
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 7.5e-68 261.2 164 73.8
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 1.3e-67 260.4 152 78.3
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 2.2e-67 259.6 164 72.6
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 2.9e-67 259.2 167 74.3
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 2.9e-67 259.2 167 74.3
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 2.9e-67 259.2 169 71.6
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 3.7e-67 258.8 156 76.3
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 8.3e-67 257.7 167 71.3
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 1.9e-66 256.5 187 66.3
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 1.9e-66 256.5 156 73.1
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 1.9e-66 256.5 167 68.9
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 2.4e-66 256.1 171 70.2
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 4.1e-66 255.4 167 71.3
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 7.1e-66 254.6 168 67.3
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 9.2e-66 254.2 163 72.4
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 9.2e-66 254.2 163 73.0
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 1.6e-65 253.4 173 66.5
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 2.1e-65 253.1 167 68.3
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 2.1e-65 253.1 169 69.8
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 2.7e-65 252.7 164 70.1
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 2.7e-65 252.7 168 70.2
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 2.7e-65 252.7 167 70.1
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 3.5e-65 252.3 163 73.6
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 4.6e-65 251.9 168 72.0
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 6.0e-65 251.5 171 69.0
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 6.0e-65 251.5 167 68.9
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 6.0e-65 251.5 170 70.0
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 6.0e-65 251.5 170 70.0
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 6.0e-65 251.5 159 73.6
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 6.0e-65 251.5 167 70.1
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 7.8e-65 251.1 166 67.5
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 7.8e-65 251.1 166 70.5
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 1.7e-64 250.0 169 69.2
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 1.7e-64 250.0 161 73.3
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 1.7e-64 250.0 170 68.8
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 2.3e-64 249.6 161 68.9
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 3.0e-64 249.2 171 68.4
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 3.9e-64 248.8 179 66.5
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 5.1e-64 248.4 170 68.8
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 5.1e-64 248.4 169 68.0
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 6.6e-64 248.1 161 72.7
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 8.6e-64 247.7 169 67.5
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 8.6e-64 247.7 157 70.1
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 1.9e-63 246.5 157 72.0
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 4.3e-63 245.4 157 72.0
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 9.5e-63 244.2 165 67.9
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 9.5e-63 244.2 168 66.1
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 2.1e-62 243.0 153 71.2
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 3.6e-62 242.3 167 68.3
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 3.6e-62 242.3 166 69.9
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 4.7e-62 241.9 156 69.9
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 6.2e-62 241.5 158 70.9
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 6.2e-62 241.5 165 67.9
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 8.1e-62 241.1 159 69.8
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 1.8e-61 240.0 206 57.8
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 5.2e-61 238.4 125 92.8
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 2.0e-60 236.5 148 73.6
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 2.0e-60 236.5 159 67.3
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.6e-60 236.1 154 67.5
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 3.4e-60 235.7 155 68.4
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 3.4e-60 235.7 170 64.7
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 3.4e-60 235.7 148 69.6
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 7.6e-60 234.6 157 67.5
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 1.3e-59 233.8 164 66.5
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 2.2e-59 233.0 173 64.2
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 2.9e-59 232.6 164 64.6
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 3.7e-59 232.3 148 70.3
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 3.7e-59 232.3 159 68.6
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 3.7e-59 232.3 159 68.6
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 4.9e-59 231.9 154 67.5
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 1.1e-58 230.7 163 66.9
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.4e-58 229.6 159 67.9
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 3.2e-58 229.2 148 70.9
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 9.2e-58 227.6 159 67.3
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 2.3e-56 223.0 157 66.9
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 4.3e-55 218.8 161 64.0
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 5.6e-55 218.4 157 65.6
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 1.4e-53 213.8 155 67.7
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 4.2e-50 202.2 168 61.9
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 5.4e-50 201.8 157 63.7
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 4.6e-49 198.7 157 54.8
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 1.1e-47 194.1 147 56.5
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 3.3e-47 192.6 123 67.5
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 4.3e-47 192.2 123 70.7
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 8.1e-46 188.0 132 65.2
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 1.1e-45 187.6 140 61.4
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.4e-45 187.2 156 59.0
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 9.0e-45 184.5 156 62.2
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 9.9e-44 181.0 158 54.4
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 1.3e-43 180.6 157 60.5
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 1.0e-40 171.0 150 58.7
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 2.9e-35 152.9 72 100.0
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 4.9e-35 152.1 123 57.7
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 1.2e-33 147.5 92 70.7
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.0e-28 130.2 94 69.1
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 1.3e-27 127.5 77 72.7
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 3.8e-27 125.9 114 55.3
TPR.G26204 Trifolium pratense HOM05D006982 ORTHO05D413089 3.6e-17 92.8 47 89.4
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 1.6e-14 84.0 43 88.4
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 2.4e-13 80.1 50 76.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 6.5e-11 72.0 44 77.3
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 2.5e-10 70.1 48 62.5
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 2.5e-10 70.1 47 74.5
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 1.2e-09 67.8 70 47.1
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 1.0e-08 64.7 43 69.8
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 6.3e-06 55.5 47 51.1


User provided reference genes

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