Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 1.1e-57 226.5 117 100.0
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 7.5e-35 150.6 111 73.0
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.2e-32 143.3 91 82.4
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 2.7e-32 142.1 111 72.1
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 4.5e-32 141.4 111 69.4
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 6.6e-31 137.5 111 69.4
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 1.1e-30 136.7 111 67.6
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 1.9e-30 136.0 93 79.6
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 9.5e-30 133.7 111 67.6
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 6.1e-29 131.0 104 72.1
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 2.2e-26 122.5 85 76.5
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 2.9e-26 122.1 125 60.8
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 3.7e-26 121.7 89 74.2
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 4.1e-25 118.2 125 60.0
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 1.9e-22 109.4 91 65.9
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.6e-21 106.3 89 62.9
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 2.8e-21 105.5 93 59.1
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 3.6e-21 105.1 93 59.1
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 4.7e-21 104.8 91 61.5
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 4.7e-21 104.8 111 55.0
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 6.2e-21 104.4 117 51.3
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 8.0e-21 104.0 92 63.0
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.4e-20 103.2 93 58.1
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 1.8e-20 102.8 91 60.4
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 1.8e-20 102.8 111 53.2
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 6.8e-20 100.9 108 55.6
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 1.2e-19 100.1 108 51.9
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 2.0e-19 99.4 91 61.5
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.6e-19 99.0 93 57.0
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.6e-19 99.0 93 57.0
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 4.4e-19 98.2 91 59.3
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 4.4e-19 98.2 86 61.6
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 5.8e-19 97.8 91 59.3
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 5.8e-19 97.8 91 59.3
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 5.8e-19 97.8 91 59.3
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 5.8e-19 97.8 91 58.2
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 5.8e-19 97.8 78 65.4
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 7.5e-19 97.4 91 60.4
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 9.8e-19 97.1 111 50.5
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 9.8e-19 97.1 108 54.6
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 9.8e-19 97.1 93 57.0
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.3e-18 96.7 111 52.3
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.3e-18 96.7 96 58.3
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 1.7e-18 96.3 92 56.5
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 8.3e-18 94.0 78 65.4
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 1.1e-17 93.6 103 51.5
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.4e-17 93.2 63 69.8
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 1.4e-17 93.2 85 60.0
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 1.9e-17 92.8 96 54.2
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 4.1e-17 91.7 80 61.2
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 4.1e-17 91.7 98 57.1
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 5.4e-17 91.3 117 47.9
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 7.0e-17 90.9 93 52.7
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 9.2e-17 90.5 93 52.7
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 1.2e-16 90.1 93 52.7
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 2.1e-16 89.4 62 72.6
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 2.1e-16 89.4 93 52.7
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 2.7e-16 89.0 82 57.3
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 3.5e-16 88.6 59 72.9
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 3.5e-16 88.6 59 72.9
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 6.0e-16 87.8 66 63.6
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 6.0e-16 87.8 89 56.2
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 6.0e-16 87.8 58 74.1
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 7.8e-16 87.4 80 57.5
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 7.8e-16 87.4 82 58.5
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 1.0e-15 87.0 90 52.2
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 1.0e-15 87.0 89 52.8
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.0e-15 87.0 91 52.7
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.0e-15 87.0 91 52.7
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 1.3e-15 86.7 59 71.2
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 6.6e-15 84.3 92 47.8
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.1e-14 83.6 94 46.8
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.9e-14 82.8 91 51.6
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 3.3e-14 82.0 79 57.0
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 4.3e-14 81.6 90 47.8
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.3e-14 81.6 79 57.0
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 5.6e-14 81.3 75 54.7
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 5.6e-14 81.3 92 48.9
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 5.6e-14 81.3 92 48.9
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 7.3e-14 80.9 94 45.7
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 9.5e-14 80.5 84 53.6
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.5e-14 80.5 79 50.6
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 9.5e-14 80.5 79 50.6
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.2e-13 80.1 61 63.9
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.2e-13 80.1 61 63.9
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 3.6e-13 78.6 58 63.8
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 4.7e-13 78.2 75 54.7
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 4.7e-13 78.2 75 54.7
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.7e-13 78.2 61 62.3
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 4.7e-13 78.2 82 53.7
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 4.7e-13 78.2 90 47.8
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 6.2e-13 77.8 66 60.6
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 6.2e-13 77.8 60 63.3
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 8.1e-13 77.4 82 53.7
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.1e-12 77.0 91 50.5
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 1.8e-12 76.3 60 61.7
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 2.3e-12 75.9 75 53.3
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 2.3e-12 75.9 60 61.7
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 3.1e-12 75.5 60 63.3
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 2.0e-11 72.8 60 61.7
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 2.0e-11 72.8 79 49.4
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 2.6e-11 72.4 66 53.0
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.9e-10 68.9 91 46.2
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 3.7e-10 68.6 78 48.7
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 4.9e-10 68.2 60 55.0
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 6.4e-10 67.8 58 56.9
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.9e-09 66.2 75 44.0
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 3.2e-09 65.5 62 48.4
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 2.1e-08 62.8 81 46.9
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.1e-08 62.8 64 53.1
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 4.6e-08 61.6 61 52.5
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 4.6e-08 61.6 56 50.0
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.7e-07 59.7 91 38.5
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 3.0e-07 58.9 60 51.7
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 3.9e-07 58.5 65 41.5
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 1.1e-06 57.0 72 47.2


User provided reference genes

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