Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 3.5e-128 461.8 272 100.0
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 2.6e-115 419.1 248 86.3
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 1.6e-109 399.8 248 81.5
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 5.7e-102 374.8 249 80.7
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 9.7e-102 374.0 248 77.8
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 8.2e-101 370.9 246 78.5
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 6.9e-100 367.9 247 81.0
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 7.7e-99 364.4 249 75.1
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 1.0e-98 364.0 248 75.8
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 2.9e-98 362.5 249 74.7
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 3.0e-95 352.4 250 76.0
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 2.6e-94 349.4 246 78.0
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 1.2e-91 340.5 245 71.8
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 4.5e-91 338.6 248 71.0
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 5.5e-89 331.6 228 73.7
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.5e-86 323.6 242 69.0
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 2.2e-85 319.7 212 75.5
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 3.7e-85 318.9 246 68.3
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 3.1e-84 315.8 227 70.5
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 5.3e-84 315.1 258 66.7
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 1.6e-83 313.5 245 67.8
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 1.5e-81 307.0 204 75.0
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 4.2e-81 305.4 206 72.8
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 5.5e-81 305.1 255 67.5
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 9.4e-81 304.3 249 63.9
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 9.4e-81 304.3 266 62.8
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 2.1e-80 303.1 248 64.5
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.1e-80 301.6 240 65.8
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 6.1e-80 301.6 227 70.9
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 1.0e-79 300.8 236 69.9
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 3.4e-78 295.8 237 64.1
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 4.4e-78 295.4 241 64.7
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 5.7e-78 295.0 206 77.7
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.3e-77 293.9 209 68.9
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 1.7e-77 293.5 236 64.8
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 1.7e-77 293.5 227 64.8
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 6.3e-77 291.6 209 70.3
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 8.3e-77 291.2 252 61.5
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 1.4e-76 290.4 246 63.0
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 9.1e-76 287.7 233 62.2
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 2.0e-75 286.6 215 70.7
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.5e-75 285.8 241 61.0
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 4.5e-75 285.4 202 70.8
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 1.0e-74 284.3 209 67.9
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 1.7e-74 283.5 215 66.0
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 2.9e-74 282.7 223 69.1
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 3.8e-74 282.3 223 69.5
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 5.0e-74 282.0 246 63.8
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 8.5e-74 281.2 209 67.0
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 8.5e-74 281.2 206 70.4
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 1.9e-73 280.0 217 66.4
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 1.9e-73 280.0 240 60.0
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 2.5e-73 279.6 221 61.1
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 3.2e-73 279.3 242 64.9
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 9.4e-73 277.7 233 63.5
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 1.6e-72 276.9 242 63.6
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.6e-72 276.9 214 68.7
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 2.7e-72 276.2 225 68.4
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 1.4e-71 273.9 207 68.6
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 1.8e-71 273.5 210 68.1
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 1.8e-71 273.5 259 57.5
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 4.0e-71 272.3 228 63.6
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 5.2e-71 271.9 223 65.0
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 8.8e-71 271.2 210 67.1
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 2.0e-70 270.0 207 63.3
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.4e-70 269.2 206 69.9
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 4.4e-70 268.9 215 60.0
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 3.7e-69 265.8 189 68.8
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 4.9e-69 265.4 246 61.0
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 8.3e-69 264.6 229 63.8
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 2.4e-68 263.1 246 58.5
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 5.4e-68 261.9 247 59.1
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.5e-67 259.2 212 67.9
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.5e-67 259.2 241 62.7
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 3.5e-67 259.2 241 62.7
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 1.7e-66 256.9 214 65.0
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 8.6e-66 254.6 245 60.8
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 1.1e-65 254.2 241 61.8
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 1.1e-65 254.2 241 61.8
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 5.6e-65 251.9 209 60.3
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 7.3e-65 251.5 241 58.9
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 9.5e-65 251.1 247 52.6
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 3.6e-64 249.2 197 70.1
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 3.6e-64 249.2 204 61.3
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 4.7e-64 248.8 200 61.5
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 6.1e-64 248.4 254 55.1
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 2.3e-63 246.5 184 70.7
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.0e-63 246.1 254 53.9
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 3.0e-63 246.1 242 58.7
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 6.8e-63 245.0 244 59.0
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 2.0e-62 243.4 253 53.8
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 2.6e-62 243.0 202 64.9
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 5.7e-62 241.9 247 55.1
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.8e-62 241.1 241 57.7
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 9.8e-62 241.1 241 57.7
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 9.8e-62 241.1 219 58.0
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 1.4e-60 237.3 211 65.4
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 2.4e-60 236.5 218 63.3
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 9.2e-60 234.6 216 58.3
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 2.7e-59 233.0 229 57.2
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 2.7e-59 233.0 229 57.2
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 4.6e-59 232.3 229 57.2
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 4.6e-59 232.3 235 54.0
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 2.3e-58 229.9 186 61.3
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 8.6e-58 228.0 252 55.6
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 8.6e-58 228.0 252 55.6
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 1.2e-56 224.2 253 53.0
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 1.6e-56 223.8 203 61.6
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 2.8e-56 223.0 253 55.7
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 2.8e-56 223.0 188 60.1
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 4.7e-56 222.2 209 56.9
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 8.0e-56 221.5 203 56.2
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 1.4e-55 220.7 209 59.3
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 1.8e-55 220.3 232 55.2
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 2.3e-55 219.9 229 55.0
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 7.5e-54 214.9 155 74.8
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 2.9e-53 213.0 155 69.0
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 3.7e-53 212.6 213 53.5
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 3.7e-53 212.6 213 53.5
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.4e-53 211.8 213 53.5
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 1.1e-52 211.1 232 53.4
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.1e-52 211.1 213 53.1
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 3.2e-52 209.5 181 56.9
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 7.0e-52 208.4 218 52.8
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.0e-51 205.3 194 55.7
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 6.0e-51 205.3 202 52.5
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 1.0e-50 204.5 154 66.2
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.7e-50 203.8 215 58.6
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 2.3e-50 203.4 209 52.6
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 5.6e-49 198.7 186 57.0
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 9.5e-49 198.0 200 52.0
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 2.1e-48 196.8 200 51.5
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 2.3e-47 193.4 227 50.2
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 7.5e-46 188.3 169 63.9
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 4.9e-45 185.7 199 47.2
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 2.4e-44 183.3 202 47.5
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 2.4e-44 183.3 202 47.5
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 2.4e-44 183.3 197 50.3
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 3.5e-43 179.5 205 57.1
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 8.6e-42 174.9 243 43.2
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.1e-41 174.5 225 44.4
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 3.3e-41 172.9 143 65.0
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 7.3e-41 171.8 246 44.7
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 2.8e-40 169.9 195 49.7
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.1e-39 167.9 222 42.8
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 8.9e-39 164.9 198 43.4
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 1.5e-38 164.1 205 42.4
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 2.0e-38 163.7 198 42.9
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 2.9e-37 159.8 192 42.7
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 4.9e-37 159.1 215 39.1
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 8.4e-37 158.3 200 44.5
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 2.4e-36 156.8 185 43.2
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 7.1e-36 155.2 156 53.2
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 7.8e-35 151.8 196 42.3
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.3e-33 145.2 129 62.8
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.4e-31 140.2 197 40.1
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 1.3e-29 134.4 131 56.5
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 2.8e-24 116.7 158 39.9
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 9.0e-23 111.7 158 38.6
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 9.9e-22 108.2 98 64.3
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.9e-20 104.0 201 34.8
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 5.4e-20 102.4 73 74.0
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 9.3e-20 101.7 78 64.1
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 4.8e-16 89.4 157 35.0
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 2.4e-15 87.0 63 66.7
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 2.4e-15 87.0 67 65.7
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.2e-14 84.7 76 61.8
CiPaw.14G122400 Carya illinoinensis HOM05D004265 ORTHO05D005175 1.1e-12 78.2 57 73.7
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 5.1e-10 69.3 211 26.1
COL.COLO4_28325 Corchorus olitorius HOM05D004265 ORTHO05D005175 2.4e-07 60.5 41 65.9
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 2.6e-06 57.0 212 23.6


User provided reference genes

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