Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26105 Trifolium pratense HOM05D000592 ORTHO05D037879 1.0e-58 229.9 126 100.0
VMungo0720G2930 Vigna mungo HOM05D000592 ORTHO05D001485 1.9e-36 156.0 125 64.8
arahy.Tifrunner.gnm1.ann1.AFV0LT Arachis hypogaea HOM05D000592 ORTHO05D001485 3.5e-30 135.2 125 60.8
Lalb_Chr06g0160711 Lupinus albus HOM05D000592 ORTHO05D001485 1.7e-29 132.9 125 58.4
arahy.Tifrunner.gnm1.ann1.C4CAJP Arachis hypogaea HOM05D000592 ORTHO05D001485 2.3e-29 132.5 125 59.2
Glyma.11G006800 Glycine max HOM05D000592 ORTHO05D001485 6.6e-29 131.0 125 57.6
VMungo1215G1460 Vigna mungo HOM05D000592 ORTHO05D001485 4.9e-24 114.8 125 53.6
Phvul.002G043800 Phaseolus vulgaris HOM05D000592 ORTHO05D001485 7.1e-23 110.9 121 52.9
Dinv44563 Davidia involucrata HOM05D000592 ORTHO05D001485 8.1e-19 97.4 125 44.0
TAR633G1270 Trochodendron aralioides HOM05D000592 ORTHO05D001485 8.1e-19 97.4 124 44.4
Prupe.1G019400 Prunus persica HOM05D000592 ORTHO05D001485 1.4e-18 96.7 124 44.4
MD16G1197900 Malus domestica HOM05D000592 ORTHO05D001485 6.9e-18 94.4 124 42.7
Haze_11215 Corylus avellana HOM05D000592 ORTHO05D001485 1.5e-17 93.2 124 43.5
Cfa008459 Carpinus fangiana HOM05D000592 ORTHO05D001485 2.6e-17 92.4 124 42.7
CSS0037517 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 5.8e-17 91.3 124 42.7
CSS0042524 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 5.8e-17 91.3 125 40.0
CiPaw.01G197200 Carya illinoinensis HOM05D000592 ORTHO05D001485 7.6e-17 90.9 124 41.1
Dinv14033 Davidia involucrata HOM05D000592 ORTHO05D001485 1.3e-16 90.1 125 43.2
TAR365G0678 Trochodendron aralioides HOM05D000592 ORTHO05D001485 3.8e-16 88.6 124 42.7
CSS0036142 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 1.9e-15 86.3 124 41.1
Dinv22512 Davidia involucrata HOM05D000592 ORTHO05D001485 1.9e-15 86.3 124 40.3
Dinv34787 Davidia involucrata HOM05D000592 ORTHO05D001485 1.9e-15 86.3 124 40.3
FAN27G2684 Fragaria x ananassa HOM05D000592 ORTHO05D001485 9.3e-15 84.0 125 38.4
VMungo0720G0445 Vigna mungo HOM05D000592 ORTHO05D001485 9.3e-15 84.0 123 39.0
CSS0004148 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 1.2e-14 83.6 113 42.5
Haze_04665 Corylus avellana HOM05D000592 ORTHO05D001485 1.2e-14 83.6 124 39.5
Manes.15G031600 Manihot esculenta HOM05D000592 ORTHO05D001485 1.2e-14 83.6 124 41.1
MD13G1197900 Malus domestica HOM05D000592 ORTHO05D001485 1.6e-14 83.2 124 41.9
Phvul.007G174000 Phaseolus vulgaris HOM05D000592 ORTHO05D001485 1.6e-14 83.2 120 39.2
Manes.01G204900 Manihot esculenta HOM05D000592 ORTHO05D001485 2.1e-14 82.8 124 36.3
Cfa006181 Carpinus fangiana HOM05D000592 ORTHO05D001485 2.7e-14 82.4 124 37.9
Lalb_Chr02g0142601 Lupinus albus HOM05D000592 ORTHO05D001485 2.7e-14 82.4 123 39.8
FvH4_2g23102 Fragaria vesca HOM05D000592 ORTHO05D001485 4.6e-14 81.6 124 38.7
FAN24G2442 Fragaria x ananassa HOM05D000592 ORTHO05D001485 4.6e-14 81.6 124 38.7
Ciclev10004130m.g Citrus clementina HOM05D000592 ORTHO05D001485 6.0e-14 81.3 124 42.7
Lj3A729T52 Lonicera japonica HOM05D000592 ORTHO05D001485 6.0e-14 81.3 125 39.2
RcHm_v2.0_Chr6g0290321 Rosa chinensis HOM05D000592 ORTHO05D001485 6.0e-14 81.3 124 37.1
Thecc.04G236700 Theobroma cacao HOM05D000592 ORTHO05D001485 7.9e-14 80.9 124 41.9
Atru.chr4.2386 Acer truncatum HOM05D000592 ORTHO05D001485 1.3e-13 80.1 121 39.7
Atru.ctg752_3.20 Acer truncatum HOM05D000592 ORTHO05D037879 1.3e-13 80.1 121 39.7
Lj1A50G82 Lonicera japonica HOM05D000592 ORTHO05D001485 1.3e-13 80.1 120 37.5
Glyma.10G028800 Glycine max HOM05D000592 ORTHO05D001485 5.1e-13 78.2 123 38.2
Psat6g059600 Pisum sativum HOM05D000592 ORTHO05D001485 6.6e-13 77.8 124 38.7
FAN15G2415 Fragaria x ananassa HOM05D000592 ORTHO05D001485 8.7e-13 77.4 124 37.1
Glyma.01G236400 Glycine max HOM05D000592 ORTHO05D001485 8.7e-13 77.4 119 42.0
MD11G1280400 Malus domestica HOM05D000592 ORTHO05D001485 1.5e-12 76.6 123 36.6
TAR362G0063 Trochodendron aralioides HOM05D000592 ORTHO05D001485 1.5e-12 76.6 113 39.8
VMungo1383G0169 Vigna mungo HOM05D000592 ORTHO05D001485 1.5e-12 76.6 123 37.4
Cpa.g.sc58.60 Carica papaya HOM05D000592 ORTHO05D001485 1.9e-12 76.3 124 39.5
arahy.Tifrunner.gnm1.ann1.M530PZ Arachis hypogaea HOM05D000592 ORTHO05D001485 3.3e-12 75.5 123 35.8
Prupe.8G236300 Prunus persica HOM05D000592 ORTHO05D001485 4.3e-12 75.1 124 36.3
arahy.Tifrunner.gnm1.ann1.E13XA1 Arachis hypogaea HOM05D000592 ORTHO05D001485 5.6e-12 74.7 123 35.8
Eucgr.H03424 Eucalyptus grandis HOM05D000592 ORTHO05D001485 5.6e-12 74.7 125 32.8
CiPaw.02G122400 Carya illinoinensis HOM05D000592 ORTHO05D001485 1.6e-11 73.2 123 35.8
Thecc.01G273300 Theobroma cacao HOM05D000592 ORTHO05D001485 1.6e-11 73.2 124 36.3
COL.COLO4_09053 Corchorus olitorius HOM05D000592 ORTHO05D001485 2.8e-11 72.4 124 33.9
Atru.chr4.2409 Acer truncatum HOM05D000592 ORTHO05D001485 3.6e-11 72.0 124 37.1
Actinidia40125 Actinidia chinensis HOM05D000592 ORTHO05D001485 3.6e-11 72.0 122 37.7
Carub.0003s2291 Capsella rubella HOM05D000592 ORTHO05D001485 3.6e-11 72.0 124 33.1
Potri.005G213400 Populus trichocarpa HOM05D000592 ORTHO05D001485 3.6e-11 72.0 124 34.7
Cpa.g.sc1647.1 Carica papaya HOM05D000592 ORTHO05D001485 4.8e-11 71.6 124 33.9
Eucgr.K03339 Eucalyptus grandis HOM05D000592 ORTHO05D001485 6.2e-11 71.2 120 37.5
ClCG09G007330 Citrullus lanatus HOM05D000592 ORTHO05D001485 8.1e-11 70.9 123 35.0
Nn6g34135 Nelumbo nucifera HOM05D000592 ORTHO05D001485 1.1e-10 70.5 118 38.1
MSTRG.21542 Avicennia marina HOM05D000592 ORTHO05D001485 1.8e-10 69.7 123 35.8
Cc02_g30990 Coffea canephora HOM05D000592 ORTHO05D001485 1.8e-10 69.7 124 37.1
Duzib211G0338 Durio zibethinus HOM05D000592 ORTHO05D001485 1.8e-10 69.7 124 33.1
TPR.G37911 Trifolium pratense HOM05D000592 ORTHO05D001485 2.4e-10 69.3 57 59.6
Gohir.D09G220660 Gossypium hirsutum HOM05D000592 ORTHO05D001485 3.1e-10 68.9 125 36.0
Sed0008526 Sechium edule HOM05D000592 ORTHO05D001485 3.1e-10 68.9 119 35.3
Sabra02G0040600 Salix brachista HOM05D000592 ORTHO05D001485 4.0e-10 68.6 121 34.7
CsaV3_7G027820 Cucumis sativus L. HOM05D000592 ORTHO05D001485 5.3e-10 68.2 121 35.5
Duzib138G1205 Durio zibethinus HOM05D000592 ORTHO05D001485 5.3e-10 68.2 125 34.4
Gohir.A09G218100 Gossypium hirsutum HOM05D000592 ORTHO05D001485 5.3e-10 68.2 108 38.9
Potri.002G049600 Populus trichocarpa HOM05D000592 ORTHO05D001485 5.3e-10 68.2 124 34.7
Sc19g0004010 Simmondsia chinensis HOM05D000592 ORTHO05D001485 5.3e-10 68.2 121 35.5
Duzib133G0925 Durio zibethinus HOM05D000592 ORTHO05D001485 6.9e-10 67.8 124 34.7
MD03G1260100 Malus domestica HOM05D000592 ORTHO05D001485 6.9e-10 67.8 123 35.0
TWI12G0883 Tripterygium wilfordii HOM05D000592 ORTHO05D001485 6.9e-10 67.8 124 33.1
EL10Ac5g10519 Beta vulgaris HOM05D000592 ORTHO05D001485 9.0e-10 67.4 123 37.4
ClCG05G004940 Citrullus lanatus HOM05D000592 ORTHO05D001485 9.0e-10 67.4 117 35.9
Gorai.006G241600 Gossypium raimondii HOM05D000592 ORTHO05D001485 1.2e-09 67.0 125 35.2
DCAR_030679 Daucus carota HOM05D000592 ORTHO05D001485 1.5e-09 66.6 125 33.6
Psat6g205880 Pisum sativum HOM05D000592 ORTHO05D001485 1.5e-09 66.6 35 94.3
Gohir.D12G003100 Gossypium hirsutum HOM05D000592 ORTHO05D001485 2.0e-09 66.2 124 30.6
CSS0046034 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D001485 2.6e-09 65.9 121 33.9
Sed0008729 Sechium edule HOM05D000592 ORTHO05D001485 2.6e-09 65.9 120 33.3
MELO3C015797.2 Cucumis melo HOM05D000592 ORTHO05D001485 3.4e-09 65.5 116 35.3
Gorai.008G002900 Gossypium raimondii HOM05D000592 ORTHO05D001485 3.4e-09 65.5 124 30.6
AT3G22790 Arabidopsis thaliana HOM05D000592 ORTHO05D001485 4.5e-09 65.1 124 33.1
C01p41560 Brassica napus HOM05D000592 ORTHO05D001485 4.5e-09 65.1 120 33.3
BolC1t04110H Brassica oleracea HOM05D000592 ORTHO05D001485 4.5e-09 65.1 120 33.3
BraA01t03373Z Brassica rapa HOM05D000592 ORTHO05D001485 4.5e-09 65.1 121 32.2
arahy.Tifrunner.gnm1.ann1.ZRQ19F Arachis hypogaea HOM05D000592 ORTHO05D001485 5.8e-09 64.7 66 57.6
Gohir.A12G003400 Gossypium hirsutum HOM05D000592 ORTHO05D001485 5.8e-09 64.7 124 30.6
CsaV3_3G013000 Cucumis sativus L. HOM05D000592 ORTHO05D001485 7.6e-09 64.3 118 33.9
Glyma.18G155967 Glycine max HOM05D000592 ORTHO05D001485 9.9e-09 63.9 107 36.4
Aqoxy5G00422 Aquilegia oxysepala HOM05D000592 ORTHO05D001485 1.3e-08 63.5 121 33.1
AUR62032305 Chenopodium quinoa HOM05D000592 ORTHO05D001485 1.3e-08 63.5 123 34.1
Manes.05G080300 Manihot esculenta HOM05D000592 ORTHO05D001485 1.3e-08 63.5 124 33.1
A01p32430 Brassica napus HOM05D000592 ORTHO05D001485 1.7e-08 63.2 121 32.2
Ah.11g050330 Amaranthus hybridus HOM05D000592 ORTHO05D001485 2.2e-08 62.8 123 35.8
CiPaw.07G088500 Carya illinoinensis HOM05D000592 ORTHO05D001485 2.2e-08 62.8 124 33.1
Thhalv10019883m.g Eutrema salsugineum HOM05D000592 ORTHO05D001485 2.9e-08 62.4 124 32.3
Lj1g0023364 Lotus japonicus HOM05D000592 ORTHO05D001485 2.9e-08 62.4 123 31.7
Psat4g209880 Pisum sativum HOM05D000592 ORTHO05D001485 2.9e-08 62.4 54 55.6
CANSAT25G0057 Cannabis sativa HOM05D000592 ORTHO05D001485 3.8e-08 62.0 117 34.2
Ciclev10018459m.g Citrus clementina HOM05D000592 ORTHO05D001485 4.9e-08 61.6 123 33.3
Lalb_Chr01g0020071 Lupinus albus HOM05D000592 ORTHO05D001485 4.9e-08 61.6 123 31.7
Sp3g20490 Schrenkiella parvula HOM05D000592 ORTHO05D001485 4.9e-08 61.6 124 31.5
Nn1g02404 Nelumbo nucifera HOM05D000592 ORTHO05D001485 6.4e-08 61.2 121 33.1
AL3G37110 Arabidopsis lyrata HOM05D000592 ORTHO05D001485 8.4e-08 60.8 124 29.8
Medtr1g103160 Medicago truncatula HOM05D000592 ORTHO05D001485 8.4e-08 60.8 34 88.2
Peaxi162Scf00520g00613 Petunia axillaris HOM05D000592 ORTHO05D001485 8.4e-08 60.8 125 32.0
ATR0665G025 Amborella trichopoda HOM05D000592 ORTHO05D001485 1.4e-07 60.1 118 32.2
Gohir.A11G125100 Gossypium hirsutum HOM05D000592 ORTHO05D001485 1.9e-07 59.7 124 32.3
Solyc09g082510.3 Solanum lycopersicum HOM05D000592 ORTHO05D001485 1.9e-07 59.7 125 29.6
Lj6C610T3 Lonicera japonica HOM05D000592 ORTHO05D001485 2.4e-07 59.3 106 34.9
Manes.03G174500 Manihot esculenta HOM05D000592 ORTHO05D001485 2.4e-07 59.3 80 43.8
Gohir.D11G130300 Gossypium hirsutum HOM05D000592 ORTHO05D001485 3.2e-07 58.9 124 32.3
Gorai.007G139300 Gossypium raimondii HOM05D000592 ORTHO05D001485 3.2e-07 58.9 124 32.3
QL12p020650 Quercus lobata HOM05D000592 ORTHO05D001485 3.2e-07 58.9 124 30.6
CARHR098630 Cardamine hirsuta HOM05D000592 ORTHO05D001485 4.2e-07 58.5 121 30.6
Cc03_g04140 Coffea canephora HOM05D000592 ORTHO05D001485 4.2e-07 58.5 125 34.4
Sopen09g031370 Solanum pennellii HOM05D000592 ORTHO05D001485 4.2e-07 58.5 125 29.6
BraA05t21480Z Brassica rapa HOM05D000592 ORTHO05D001485 5.5e-07 58.2 124 30.6
AUR62011988 Chenopodium quinoa HOM05D000592 ORTHO05D001485 5.5e-07 58.2 123 33.3
Glyma.19G158900 Glycine max HOM05D000592 ORTHO05D001485 5.5e-07 58.2 123 30.1
PGSC0003DMG400007687 Solanum tuberosum HOM05D000592 ORTHO05D001485 5.5e-07 58.2 125 29.6
Sed0027882 Sechium edule HOM05D000592 ORTHO05D001485 7.1e-07 57.8 124 31.5
Actinidia21137 Actinidia chinensis HOM05D000592 ORTHO05D001485 1.2e-06 57.0 124 30.6
Aa31LG9G2610 Aethionema arabicum HOM05D000592 ORTHO05D001485 1.2e-06 57.0 119 29.4
A05p25950 Brassica napus HOM05D000592 ORTHO05D001485 1.2e-06 57.0 124 30.6
CAN.G1402.9 Capsicum annuum HOM05D000592 ORTHO05D001485 1.2e-06 57.0 125 28.8
Glyma.03G156600 Glycine max HOM05D000592 ORTHO05D001485 1.2e-06 57.0 123 29.3
TWI18G0970 Tripterygium wilfordii HOM05D000592 ORTHO05D001485 2.1e-06 56.2 124 31.5
C05p40320 Brassica napus HOM05D000592 ORTHO05D001485 3.5e-06 55.5 124 31.5
BolC5t32773H Brassica oleracea HOM05D000592 ORTHO05D001485 3.5e-06 55.5 124 31.5
FvH4_4g00822 Fragaria vesca HOM05D000592 ORTHO05D001485 4.6e-06 55.1 124 33.1
BcaC07g42267 Brassica carinata HOM05D000592 ORTHO05D001485 6.0e-06 54.7 121 31.4
CiPaw.08G108300 Carya illinoinensis HOM05D000592 ORTHO05D001485 7.9e-06 54.3 124 27.4
Gohir.A08G064800 Gossypium hirsutum HOM05D000592 ORTHO05D001485 7.9e-06 54.3 83 36.1
Nitab4.5_0003249g0050 Nicotiana tabacum HOM05D000592 ORTHO05D001485 7.9e-06 54.3 125 27.2
Sp7g12890 Schrenkiella parvula HOM05D000592 ORTHO05D001485 7.9e-06 54.3 117 29.1


User provided reference genes

Program Settings