Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26102 Trifolium pratense HOM05D001358 ORTHO05D001154 3.0e-147 525.4 313 100.0
TPR.G26117 Trifolium pratense HOM05D001358 ORTHO05D001154 2.7e-39 166.8 250 45.2
Glyma.01G236300 Glycine max HOM05D001358 ORTHO05D001154 2.0e-10 70.9 145 37.9
Medtr5g006530 Medicago truncatula HOM05D001358 ORTHO05D001154 2.0e-10 70.9 127 41.7
Glyma.11G006900 Glycine max HOM05D001358 ORTHO05D001154 4.5e-10 69.7 126 38.9
Duzib212G0525 Durio zibethinus HOM05D001358 ORTHO05D001154 1.7e-09 67.8 126 34.1
LjContig00408g0005420 Lotus japonicus HOM05D001358 ORTHO05D001154 1.7e-09 67.8 126 38.1
TPR.G37873 Trifolium pratense HOM05D001358 ORTHO05D001154 2.2e-09 67.4 127 39.4
Solyc12g007180.2 Solanum lycopersicum HOM05D001777 ORTHO05D001809 1.4e-08 64.7 142 31.7
Sopen12g003170 Solanum pennellii HOM05D001777 ORTHO05D001809 1.4e-08 64.7 142 31.7
PGSC0003DMG401000306 Solanum tuberosum HOM05D001777 ORTHO05D001809 1.4e-08 64.7 142 31.7
CAN.G1774.12 Capsicum annuum HOM05D001777 ORTHO05D001809 1.9e-08 64.3 142 31.0
Nitab4.5_0003733g0040 Nicotiana tabacum HOM05D001777 ORTHO05D001809 1.9e-08 64.3 142 31.0
Nitab4.5_0004391g0040 Nicotiana tabacum HOM05D001777 ORTHO05D001809 1.9e-08 64.3 142 31.0
Phvul.002G043700 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 4.2e-08 63.2 137 38.0
HPP92_005158 Vanilla planifolia HOM05D001358 ORTHO05D001154 4.2e-08 63.2 120 30.8
Atru.chr7.2141 Acer truncatum HOM05D001777 ORTHO05D001809 5.5e-08 62.8 142 32.4
Dinv14032 Davidia involucrata HOM05D001358 ORTHO05D001154 5.5e-08 62.8 127 34.6
arahy.Tifrunner.gnm1.ann1.VMK2JT Arachis hypogaea HOM05D001358 ORTHO05D001154 7.2e-08 62.4 132 37.1
Glyma.20G149100 Glycine max HOM05D001358 ORTHO05D001154 7.2e-08 62.4 165 27.3
Lalb_Chr24g0397521 Lupinus albus HOM05D001777 ORTHO05D001809 7.2e-08 62.4 170 28.8
Ca_24408_v3 Cicer arietinum L. HOM05D001358 ORTHO05D001154 1.2e-07 61.6 217 32.3
Dinv44564 Davidia involucrata HOM05D001358 ORTHO05D001154 1.2e-07 61.6 127 34.6
MELO3C006510.2 Cucumis melo HOM05D001358 ORTHO05D001154 1.6e-07 61.2 277 28.5
Phvul.007G060500 Phaseolus vulgaris HOM05D001358 ORTHO05D001154 1.6e-07 61.2 142 26.8
TWI53G1527 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 1.6e-07 61.2 126 37.3
Lalb_Chr09g0319961 Lupinus albus HOM05D001358 ORTHO05D001154 2.1e-07 60.8 116 35.3
MD12G1237500 Malus domestica HOM05D001358 ORTHO05D001154 2.1e-07 60.8 154 27.9
QL03p024809 Quercus lobata HOM05D001358 ORTHO05D001154 2.1e-07 60.8 142 27.5
VMungo0720G2732 Vigna mungo HOM05D001358 ORTHO05D001154 2.1e-07 60.8 142 26.8
Actinidia13319 Actinidia chinensis HOM05D001777 ORTHO05D001809 2.7e-07 60.5 177 30.5
Ah.07g204170 Amaranthus hybridus HOM05D001358 ORTHO05D001154 2.7e-07 60.5 142 26.8
Ciclev10007737m.g Citrus clementina HOM05D001777 ORTHO05D001809 2.7e-07 60.5 142 31.7
Migut.K00502 Erythranthe guttata HOM05D001777 ORTHO05D001809 2.7e-07 60.5 142 28.9
FvH4_6g30420 Fragaria vesca HOM05D001358 ORTHO05D001154 2.7e-07 60.5 136 27.9
MD04G1221500 Malus domestica HOM05D001358 ORTHO05D001154 2.7e-07 60.5 153 26.1
Manes.16G071700 Manihot esculenta HOM05D001777 ORTHO05D001809 2.7e-07 60.5 143 30.8
Os07g0176200 Oryza sativa ssp. japonica HOM05D001358 ORTHO05D001154 2.7e-07 60.5 142 28.2
CsaV3_3G013010 Cucumis sativus L. HOM05D001358 ORTHO05D001154 3.6e-07 60.1 278 29.1
VMungo1215G0998 Vigna mungo HOM05D001358 ORTHO05D001154 3.6e-07 60.1 135 36.3
Zm00001eb031310 Zea mays HOM05D001358 ORTHO05D001154 3.6e-07 60.1 136 28.7
Lj3A729G50 Lonicera japonica HOM05D001358 ORTHO05D001154 4.7e-07 59.7 116 35.3
arahy.Tifrunner.gnm1.ann1.HR1TS1 Arachis hypogaea HOM05D001358 ORTHO05D001154 6.1e-07 59.3 106 34.0
Gorai.007G284200 Gossypium raimondii HOM05D001358 ORTHO05D001154 6.1e-07 59.3 119 29.4
Lalb_Chr05g0211051 Lupinus albus HOM05D001358 ORTHO05D001154 6.1e-07 59.3 132 33.3
Peaxi162Scf00231g00335 Petunia axillaris HOM05D001777 ORTHO05D001809 6.1e-07 59.3 174 27.0
TWI09G1240 Tripterygium wilfordii HOM05D001358 ORTHO05D001154 6.1e-07 59.3 126 34.9
EL10Ac8g18443 Beta vulgaris HOM05D001777 ORTHO05D001809 7.9e-07 58.9 143 32.2
FvH4_6g03350 Fragaria vesca HOM05D001358 ORTHO05D001154 7.9e-07 58.9 136 25.0
vmacro15363 Vaccinium macrocarpon HOM05D001358 ORTHO05D001154 7.9e-07 58.9 166 31.3
Ciclev10004441m.g Citrus clementina HOM05D001358 ORTHO05D001154 1.0e-06 58.5 133 31.6
Lalb_Chr14g0371611 Lupinus albus HOM05D001777 ORTHO05D001809 1.0e-06 58.5 144 31.2
Thecc.04G236400 Theobroma cacao HOM05D001358 ORTHO05D001154 1.0e-06 58.5 126 31.7
AUR62010953 Chenopodium quinoa HOM05D001777 ORTHO05D001809 1.4e-06 58.2 142 29.6
AUR62021466 Chenopodium quinoa HOM05D001777 ORTHO05D001809 1.4e-06 58.2 142 29.6
FvH4_1g04340 Fragaria vesca HOM05D001777 ORTHO05D001809 1.4e-06 58.2 146 30.1
FAN09G4118 Fragaria x ananassa HOM05D000053 ORTHO05D000448 1.4e-06 58.2 131 28.2
FAN19G1104 Fragaria x ananassa HOM05D001777 ORTHO05D001809 1.4e-06 58.2 146 30.1
FAN23G1238 Fragaria x ananassa HOM05D001777 ORTHO05D001809 1.4e-06 58.2 146 30.1
FAN26G2851 Fragaria x ananassa HOM05D001777 ORTHO05D001809 1.4e-06 58.2 146 30.1
FAN28G2425 Fragaria x ananassa HOM05D001777 ORTHO05D001809 1.4e-06 58.2 146 30.1
Rhsim01G0100700 Rhododendron simsii HOM05D001777 ORTHO05D001809 1.4e-06 58.2 143 31.5
RcHm_v2.0_Chr2g0089991 Rosa chinensis HOM05D001777 ORTHO05D001809 1.4e-06 58.2 146 30.1
Hund12096 Selenicereus undatus HOM05D001358 ORTHO05D001154 1.4e-06 58.2 119 31.1
Aa31LG5G15240 Aethionema arabicum HOM05D001358 ORTHO05D001154 1.8e-06 57.8 136 27.2
Dinv17768 Davidia involucrata HOM05D001358 ORTHO05D001154 1.8e-06 57.8 93 34.4
Peaxi162Scf01363g00034 Petunia axillaris HOM05D001777 ORTHO05D001809 1.8e-06 57.8 142 29.6
SGA_v2.0_scaffold19G08763 Striga asiatica HOM05D001777 ORTHO05D001809 1.8e-06 57.8 142 29.6
TPR.G26076 Trifolium pratense HOM05D020714 ORTHO05D017062 1.8e-06 57.8 45 53.3
vmacro20720 Vaccinium macrocarpon HOM05D001777 ORTHO05D001809 1.8e-06 57.8 148 32.4
Zm00001eb301170 Zea mays HOM05D001358 ORTHO05D001154 1.8e-06 57.8 142 26.1
Duzib151G0531 Durio zibethinus HOM05D001358 ORTHO05D001154 2.3e-06 57.4 126 31.0
Gohir.A11G254450 Gossypium hirsutum HOM05D001358 ORTHO05D001154 2.3e-06 57.4 122 31.1
MD13G1197800 Malus domestica HOM05D001358 ORTHO05D001154 2.3e-06 57.4 138 34.1
Potri.005G051100 Populus trichocarpa HOM05D001358 ORTHO05D001154 2.3e-06 57.4 74 40.5
QL06p001413 Quercus lobata HOM05D001358 ORTHO05D001154 2.3e-06 57.4 225 28.4
AT2G20110 Arabidopsis thaliana HOM05D001777 ORTHO05D001809 3.0e-06 57.0 136 30.1
A05p25980 Brassica napus HOM05D001358 ORTHO05D001154 3.0e-06 57.0 155 29.0
C05p40340 Brassica napus HOM05D001358 ORTHO05D001154 3.0e-06 57.0 83 37.3
Sp3g20475 Schrenkiella parvula HOM05D001358 ORTHO05D001154 3.0e-06 57.0 142 28.9
PGR142G3402 Punica granatum HOM05D001777 ORTHO05D001809 3.9e-06 56.6 142 28.2
Rhsim02G0028000 Rhododendron simsii HOM05D001358 ORTHO05D001154 3.9e-06 56.6 96 35.4
THA.LOC104818643 Tarenaya hassleriana HOM05D001358 ORTHO05D001154 3.9e-06 56.6 143 26.6
TAR362G0329 Trochodendron aralioides HOM05D001358 ORTHO05D001154 3.9e-06 56.6 214 31.3
GSVIVG01021837001 Vitis vinifera HOM05D001358 ORTHO05D001154 3.9e-06 56.6 133 33.8
FAN02G1631 Fragaria x ananassa HOM05D001358 ORTHO05D001154 5.1e-06 56.2 129 27.9
Prupe.6G340600 Prunus persica HOM05D001358 ORTHO05D001154 5.1e-06 56.2 192 26.6
CSS0027734 Camellia sinensis var. sinensis HOM05D001358 ORTHO05D001154 6.7e-06 55.8 104 37.5
Eucgr.H03425 Eucalyptus grandis HOM05D001358 ORTHO05D001154 6.7e-06 55.8 123 32.5
Gohir.D07G006900 Gossypium hirsutum HOM05D001777 ORTHO05D001809 6.7e-06 55.8 142 29.6
Gorai.001G006500 Gossypium raimondii HOM05D001777 ORTHO05D001809 6.7e-06 55.8 142 29.6
RcHm_v2.0_Chr4g0387371 Rosa chinensis HOM05D001358 ORTHO05D001154 6.7e-06 55.8 202 27.2
Aa31LG8G9260 Aethionema arabicum HOM05D001358 ORTHO05D001154 8.8e-06 55.5 50 50.0
AT3G04850 Arabidopsis thaliana HOM05D001358 ORTHO05D001154 8.8e-06 55.5 140 26.4
Cpa.g.sc58.61 Carica papaya HOM05D001358 ORTHO05D001154 8.8e-06 55.5 136 27.9
COL.COLO4_21540 Corchorus olitorius HOM05D001358 ORTHO05D001154 8.8e-06 55.5 126 32.5
FAN14G5711 Fragaria x ananassa HOM05D001358 ORTHO05D001154 8.8e-06 55.5 194 26.8
Glyma.10G245500 Glycine max HOM05D001358 ORTHO05D001154 8.8e-06 55.5 139 33.8
Lj5g0003828 Lotus japonicus HOM05D001358 ORTHO05D001154 8.8e-06 55.5 130 35.4
TWI34G0244 Tripterygium wilfordii HOM05D001777 ORTHO05D001809 8.8e-06 55.5 180 28.3
Zm00001eb135750 Zea mays HOM05D001358 ORTHO05D001154 8.8e-06 55.5 139 28.8


User provided reference genes

Program Settings