Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 6.2e-106 387.5 199 100.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 6.4e-95 350.9 204 86.8
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 4.3e-91 338.2 203 87.7
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 2.3e-84 315.8 207 80.7
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 3.9e-84 315.1 209 79.4
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 2.1e-82 309.3 211 76.8
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 6.2e-82 307.8 209 78.9
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 1.5e-80 303.1 206 77.7
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.7e-77 292.4 206 76.7
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.3e-76 290.0 205 77.1
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 1.8e-76 289.7 202 75.7
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 2.3e-76 289.3 208 77.4
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.9e-75 286.2 207 72.9
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.9e-75 286.2 203 72.9
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.3e-75 285.0 207 72.9
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 4.3e-75 285.0 201 72.1
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 6.3e-74 281.2 214 71.5
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 8.2e-74 280.8 207 73.9
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.4e-73 280.0 205 70.2
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.4e-73 280.0 204 71.1
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.8e-73 279.6 200 73.0
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 2.4e-73 279.3 203 70.0
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 9.0e-73 277.3 205 69.8
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 9.0e-73 277.3 207 71.0
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 1.2e-72 276.9 206 72.3
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 3.4e-72 275.4 206 70.9
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 3.4e-72 275.4 204 71.1
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 7.6e-72 274.2 203 70.0
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 1.7e-71 273.1 205 73.2
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.7e-71 273.1 201 71.6
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 2.9e-71 272.3 202 71.3
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 5.0e-71 271.6 204 69.1
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 5.0e-71 271.6 220 65.9
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 5.0e-71 271.6 203 69.5
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 6.5e-71 271.2 210 71.0
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 1.4e-70 270.0 203 71.9
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 1.4e-70 270.0 198 70.7
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.9e-70 269.6 207 70.0
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 3.2e-70 268.9 203 69.5
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 5.5e-70 268.1 202 70.8
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 5.5e-70 268.1 202 72.3
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 1.2e-69 266.9 199 73.4
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.2e-69 266.9 207 69.1
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 1.6e-69 266.5 200 73.5
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 2.7e-69 265.8 200 73.0
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 2.7e-69 265.8 202 70.3
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 4.6e-69 265.0 210 72.4
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 6.1e-69 264.6 203 72.4
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 7.9e-69 264.2 198 69.2
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.0e-68 263.8 201 71.1
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.8e-68 263.1 198 68.2
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.3e-68 262.7 198 73.7
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 3.0e-68 262.3 211 68.2
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 3.9e-68 261.9 203 71.4
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 1.1e-67 260.4 198 67.7
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 1.9e-67 259.6 202 68.8
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.9e-67 259.6 202 69.8
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 3.3e-67 258.8 215 65.1
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 4.3e-67 258.5 202 69.3
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 4.3e-67 258.5 202 69.3
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 5.7e-67 258.1 203 69.0
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 5.7e-67 258.1 201 67.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 9.7e-67 257.3 202 71.3
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 9.7e-67 257.3 201 72.1
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 9.7e-67 257.3 206 68.0
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 1.3e-66 256.9 202 71.3
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 6.3e-66 254.6 183 73.2
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-65 253.8 202 70.8
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.8e-65 253.1 207 69.6
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 1.8e-65 253.1 204 68.1
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 3.1e-65 252.3 208 69.7
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 1.2e-64 250.4 141 86.5
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.5e-64 250.0 194 67.5
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 3.4e-64 248.8 198 70.2
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 4.5e-64 248.4 198 66.7
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 5.9e-64 248.1 197 71.1
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 7.7e-64 247.7 203 69.0
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 7.7e-64 247.7 148 81.1
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.7e-64 247.7 148 81.1
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 7.7e-64 247.7 196 70.9
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 1.0e-63 247.3 203 66.0
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 1.0e-63 247.3 183 71.0
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.7e-63 246.5 193 69.9
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 1.7e-63 246.5 198 71.2
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 2.9e-63 245.7 203 69.5
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.9e-63 245.7 196 70.4
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 3.8e-63 245.4 197 69.0
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 8.5e-63 244.2 148 80.4
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.1e-62 243.8 135 85.9
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 4.2e-62 241.9 183 72.7
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 1.2e-61 240.4 203 67.5
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 1.2e-61 240.4 153 77.8
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 1.0e-60 237.3 210 63.8
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.4e-60 236.9 181 71.8
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 1.4e-60 236.9 198 67.2
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 2.3e-60 236.1 212 60.4
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 2.3e-60 236.1 218 60.6
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 2.0e-59 233.0 203 67.5
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 4.4e-59 231.9 145 77.9
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 3.7e-58 228.8 203 66.5
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 4.8e-58 228.4 193 66.3
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 5.3e-57 224.9 208 65.4
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 1.2e-56 223.8 120 85.0
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.5e-56 223.4 158 69.6
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.6e-56 222.6 111 89.2
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.0e-55 220.7 211 62.6
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 1.7e-55 219.9 138 76.1
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 4.2e-54 215.3 202 63.9
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 7.9e-53 211.1 134 73.9
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 2.3e-52 209.5 127 80.3
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 2.8e-50 202.6 163 70.6
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 4.8e-50 201.8 205 54.6
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 3.1e-49 199.1 124 75.8
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.6e-48 196.8 204 61.3
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 2.6e-48 196.1 160 67.5
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.8e-47 192.2 108 85.2
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 5.0e-47 191.8 95 91.6
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.2e-45 187.2 91 94.5
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 3.3e-43 179.1 159 66.0
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 2.8e-34 149.4 82 81.7
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.6e-29 133.7 101 57.4
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.0e-28 131.0 205 48.3
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 1.5e-27 127.1 123 58.5
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.1e-25 120.9 121 62.0
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 7.0e-25 118.2 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 2.9e-23 112.8 93 54.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 2.3e-20 103.2 120 45.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.4e-18 95.1 205 42.4
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 4.1e-17 92.4 83 55.4
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.9e-15 85.9 59 67.8
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 2.1e-13 80.1 127 36.2
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 8.0e-13 78.2 36 94.4
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.3e-10 70.9 85 45.9
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.6e-08 63.9 107 43.9
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 1.7e-07 60.5 29 86.2
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 8.6e-07 58.2 83 43.4
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 5.6e-06 55.5 34 70.6


User provided reference genes

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