Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G26003 Trifolium pratense HOM05D000003 ORTHO05D016344 8.5e-84 313.5 149 100.0
Glyma.07G238550 Glycine max HOM05D000003 ORTHO05D000004 1.1e-14 84.0 148 31.1
TPR.G39272 Trifolium pratense HOM05D000003 ORTHO05D000004 2.5e-11 72.8 99 40.4
Aa31LG2G12260 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.3e-10 70.5 121 35.5
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 1.3e-10 70.5 118 36.4
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.6e-10 70.1 120 33.3
CSS0038037 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 3.7e-10 68.9 137 31.4
Aa31sc17G250 Aethionema arabicum HOM05D000003 ORTHO05D009772 4.8e-10 68.6 121 33.1
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 6.2e-10 68.2 109 33.9
CSS0009370 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.1e-09 67.4 137 31.4
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-09 67.0 158 28.5
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.4e-09 66.2 129 31.0
AUR62034895 Chenopodium quinoa HOM05D000003 ORTHO05D000022 3.1e-09 65.9 115 33.9
CANSAT54G0904 Cannabis sativa HOM05D000003 ORTHO05D000167 5.3e-09 65.1 104 30.8
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 6.9e-09 64.7 116 34.5
RcHm_v2.0_Chr2g0144631 Rosa chinensis HOM05D000003 ORTHO05D000022 9.0e-09 64.3 124 32.3
Aa31LG2G16390 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.2e-08 63.9 121 32.2
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.0e-08 63.2 124 30.6
Aa31sc314G40 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.6e-08 62.8 121 28.9
BcaC03g15774 Brassica carinata HOM05D001239 ORTHO05D000925 2.6e-08 62.8 163 25.2
AUR62022035 Chenopodium quinoa HOM05D000022 ORTHO05D013985 4.5e-08 62.0 111 35.1
AUR62044423 Chenopodium quinoa HOM05D000022 ORTHO05D013985 4.5e-08 62.0 111 35.1
Lj9P2T15 Lonicera japonica HOM05D000003 ORTHO05D000167 4.5e-08 62.0 120 32.5
Aa31LG1G4840 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.8e-08 61.6 136 30.9
EL10Ac8g18252 Beta vulgaris HOM05D000003 ORTHO05D000004 5.8e-08 61.6 118 31.4
AUR62032577 Chenopodium quinoa HOM05D000202 ORTHO05D000004 5.8e-08 61.6 106 33.0
BcaC01g03817 Brassica carinata HOM05D000003 ORTHO05D001091 7.6e-08 61.2 119 30.3
Aa31LG3G4270 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.9e-08 60.8 120 32.5
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 9.9e-08 60.8 122 29.5
CANSAT64G2222 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-07 60.5 128 29.7
SGA_v2.0_scaffold420G51381 Striga asiatica HOM05D000003 ORTHO05D000022 1.3e-07 60.5 106 34.0
EL10Ac2g04745 Beta vulgaris HOM05D000003 ORTHO05D000006 1.7e-07 60.1 105 33.3
Lj4g0027011 Lotus japonicus HOM05D000003 ORTHO05D000022 1.7e-07 60.1 97 35.1
RcHm_v2.0_Chr5g0053531 Rosa chinensis HOM05D000003 ORTHO05D000004 1.7e-07 60.1 108 33.3
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 2.2e-07 59.7 111 35.1
CiPaw.14G093100 Carya illinoinensis HOM05D000003 ORTHO05D000004 2.9e-07 59.3 108 30.6
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 2.9e-07 59.3 158 27.8
CANSAT78G1794 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-07 58.9 111 29.7
Ah.06g188390 Amaranthus hybridus HOM05D000003 ORTHO05D000004 4.9e-07 58.5 157 28.0
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 4.9e-07 58.5 103 35.9
CiPaw.13G119100 Carya illinoinensis HOM05D000003 ORTHO05D000004 6.4e-07 58.2 100 33.0
PSO384G1397 Papaver somniferum HOM05D000003 ORTHO05D001026 6.4e-07 58.2 113 31.9
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 6.4e-07 58.2 111 30.6
Atru.chr11.757 Acer truncatum HOM05D000003 ORTHO05D000004 8.4e-07 57.8 155 27.7
CSS0031955 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000167 8.4e-07 57.8 106 30.2
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 8.4e-07 57.8 111 32.4
Aa31sc18G100 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-06 57.4 126 28.6
AT1G10000 Arabidopsis thaliana HOM05D001239 ORTHO05D000925 1.1e-06 57.4 113 32.7
CSS0031820 Camellia sinensis var. sinensis HOM05D000698 ORTHO05D000004 1.1e-06 57.4 120 27.5
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-06 57.4 135 26.7
CANSAT78G0319 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-06 57.4 153 24.8
Aa31LG10G9400 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-06 57.0 121 29.8
CSS0032702 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.4e-06 57.0 109 30.3
Glyma.06G010150 Glycine max HOM05D000003 ORTHO05D000004 1.4e-06 57.0 60 41.7
QL01p039135 Quercus lobata HOM05D000003 ORTHO05D000006 1.4e-06 57.0 118 29.7
QL07p019929 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-06 57.0 161 28.0
Lj4C747T2 Lonicera japonica HOM05D000003 ORTHO05D000004 1.9e-06 56.6 57 49.1
QL11p009033 Quercus lobata HOM05D000003 ORTHO05D000004 1.9e-06 56.6 105 31.4
Aa31sc51G20 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.4e-06 56.2 126 27.8
Ah.12g061370 Amaranthus hybridus HOM05D000003 ORTHO05D000167 2.4e-06 56.2 123 27.6
EL10Ac5g10920 Beta vulgaris HOM05D000003 ORTHO05D012910 2.4e-06 56.2 54 44.4
BraA04t17503Z Brassica rapa HOM05D001239 ORTHO05D000925 2.4e-06 56.2 112 29.5
BraA07t30152Z Brassica rapa HOM05D001239 ORTHO05D000925 2.4e-06 56.2 157 25.5
Thhalv10011015m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 2.4e-06 56.2 111 29.7
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 2.4e-06 56.2 111 31.5
AUR62035351 Chenopodium quinoa HOM05D000003 ORTHO05D000167 3.2e-06 55.8 109 33.0
PSO675G5188 Papaver somniferum HOM05D000003 ORTHO05D001026 3.2e-06 55.8 106 32.1
Sed0015769 Sechium edule HOM05D000003 ORTHO05D000004 3.2e-06 55.8 113 30.1
CANSAT11G0439 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-06 55.5 112 31.2
Lj7C747G6 Lonicera japonica HOM05D000003 ORTHO05D000004 4.2e-06 55.5 102 30.4
Atru.chr12.1755 Acer truncatum HOM05D000003 ORTHO05D000022 5.5e-06 55.1 156 28.8
Aa31sc1594G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.5e-06 55.1 114 32.5
AT3G09510 Arabidopsis thaliana HOM05D000003 ORTHO05D000004 5.5e-06 55.1 151 27.8
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 5.5e-06 55.1 104 33.7
CANSAT21G0505 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-06 55.1 147 26.5
CANSAT35G1604 Cannabis sativa HOM05D000003 ORTHO05D000004 5.5e-06 55.1 120 27.5
CANSAT56G2910 Cannabis sativa HOM05D000003 ORTHO05D000167 5.5e-06 55.1 113 29.2
LjContig00357g0004525 Lotus japonicus HOM05D000003 ORTHO05D000022 5.5e-06 55.1 153 27.5
TPR.G29553 Trifolium pratense HOM05D008718 ORTHO05D016344 5.5e-06 55.1 81 33.3
Atru.chr6.1397 Acer truncatum HOM05D000003 ORTHO05D000022 7.1e-06 54.7 113 31.0
Aa31LG7G3330 Aethionema arabicum HOM05D000003 ORTHO05D000004 7.1e-06 54.7 121 28.1
EL10Ac6g13992 Beta vulgaris HOM05D000003 ORTHO05D000004 7.1e-06 54.7 117 29.1
BcaB02g07220 Brassica carinata HOM05D000003 ORTHO05D001091 7.1e-06 54.7 114 31.6
BraA01t03685Z Brassica rapa HOM05D001239 ORTHO05D000925 7.1e-06 54.7 112 27.7
CANSAT21G0265 Cannabis sativa HOM05D000003 ORTHO05D000167 7.1e-06 54.7 114 28.1
CANSAT35G2037 Cannabis sativa HOM05D000003 ORTHO05D000167 7.1e-06 54.7 111 27.0
CANSAT64G1939 Cannabis sativa HOM05D000003 ORTHO05D000004 7.1e-06 54.7 116 27.6
TWI31G1374 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.1e-06 54.7 109 30.3
TWI32G0681 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 7.1e-06 54.7 109 30.3
Aa31LG8G10420 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.3e-06 54.3 109 29.4
CANSAT56G2371 Cannabis sativa HOM05D000003 ORTHO05D000004 9.3e-06 54.3 110 29.1
TWI14G0340 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 9.3e-06 54.3 109 30.3


User provided reference genes

Program Settings