Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25990 Trifolium pratense HOM05D003318 ORTHO05D004544 5.8e-192 674.1 351 100.0
Psat0ss3962g0480 Pisum sativum HOM05D003318 ORTHO05D004544 6.4e-98 361.7 378 55.8
Ca_16165_v3 Cicer arietinum L. HOM05D003318 ORTHO05D004544 8.1e-85 318.2 380 51.6
Lj1g0000906 Lotus japonicus HOM05D003318 ORTHO05D004544 2.1e-80 303.5 382 50.0
VMungo1309G2893 Vigna mungo HOM05D003318 ORTHO05D004544 1.0e-79 301.2 206 72.8
arahy.Tifrunner.gnm1.ann1.XU68ZZ Arachis hypogaea HOM05D003318 ORTHO05D004544 5.1e-79 298.9 206 72.8
arahy.Tifrunner.gnm1.ann1.GNW9LV Arachis hypogaea HOM05D003318 ORTHO05D004544 1.5e-78 297.4 206 72.8
Phvul.009G177200 Phaseolus vulgaris HOM05D003318 ORTHO05D004544 7.4e-78 295.0 206 71.4
Medtr3g077590 Medicago truncatula HOM05D003318 ORTHO05D004544 1.3e-77 294.3 380 50.8
TAR622G0444 Trochodendron aralioides HOM05D003318 ORTHO05D004544 1.3e-77 294.3 206 71.8
Atru.chr9.2499 Acer truncatum HOM05D003318 ORTHO05D004544 6.2e-77 292.0 206 69.9
Lalb_Chr08g0236611 Lupinus albus HOM05D003318 ORTHO05D004544 1.8e-76 290.4 206 72.3
TAR629G1623 Trochodendron aralioides HOM05D003318 ORTHO05D004544 1.8e-76 290.4 206 70.9
Eucgr.B00293 Eucalyptus grandis HOM05D003318 ORTHO05D004544 2.4e-76 290.0 206 70.4
COL.COLO4_30076 Corchorus olitorius HOM05D003318 ORTHO05D004544 5.3e-76 288.9 201 70.6
Glyma.04G184900 Glycine max HOM05D003318 ORTHO05D004544 1.2e-75 287.7 206 69.9
TAR374G0007 Trochodendron aralioides HOM05D003318 ORTHO05D004544 1.5e-75 287.3 206 70.4
CiPaw.11G024300 Carya illinoinensis HOM05D003318 ORTHO05D004544 3.4e-75 286.2 206 71.4
Cc07_g01950 Coffea canephora HOM05D003318 ORTHO05D004544 3.4e-75 286.2 215 66.5
Dinv33471 Davidia involucrata HOM05D003318 ORTHO05D004544 1.7e-74 283.9 206 68.4
Migut.O00115 Erythranthe guttata HOM05D003318 ORTHO05D004544 1.7e-74 283.9 206 68.9
Nitab4.5_0000003g0690 Nicotiana tabacum HOM05D003318 ORTHO05D004544 2.2e-74 283.5 202 69.3
AUR62008192 Chenopodium quinoa HOM05D003318 ORTHO05D004544 2.9e-74 283.1 206 67.5
SGA_v2.0_scaffold116G32230 Striga asiatica HOM05D003318 ORTHO05D004544 2.9e-74 283.1 206 68.4
GSVIVG01007720001 Vitis vinifera HOM05D003318 ORTHO05D004544 2.9e-74 283.1 206 70.4
Manes.06G106300 Manihot esculenta HOM05D003318 ORTHO05D004544 3.8e-74 282.7 206 67.5
Sed0002340 Sechium edule HOM05D003318 ORTHO05D004544 3.8e-74 282.7 223 63.7
PGSC0003DMG402027084 Solanum tuberosum HOM05D003318 ORTHO05D004544 3.8e-74 282.7 207 68.1
Sc04g0001710 Simmondsia chinensis HOM05D003318 ORTHO05D004544 5.0e-74 282.3 206 68.0
CAN.G2085.3 Capsicum annuum HOM05D003318 ORTHO05D004544 6.5e-74 282.0 207 68.1
RcHm_v2.0_Chr7g0193331 Rosa chinensis HOM05D003318 ORTHO05D004544 6.5e-74 282.0 206 67.5
Solyc06g071550.3 Solanum lycopersicum HOM05D003318 ORTHO05D004544 6.5e-74 282.0 207 68.1
MSTRG.23140 Avicennia marina HOM05D003318 ORTHO05D004544 8.4e-74 281.6 206 68.0
Lj7A595G62 Lonicera japonica HOM05D003318 ORTHO05D004544 8.4e-74 281.6 257 56.8
GSVIVG01032439001 Vitis vinifera HOM05D003318 ORTHO05D004544 8.4e-74 281.6 206 68.9
CiPaw.12G028100 Carya illinoinensis HOM05D003318 ORTHO05D004544 1.1e-73 281.2 206 69.4
Nn3g16817 Nelumbo nucifera HOM05D003318 ORTHO05D004544 1.1e-73 281.2 206 68.4
Thecc.03G014800 Theobroma cacao HOM05D003318 ORTHO05D004544 1.1e-73 281.2 206 68.9
FAN04G1614 Fragaria x ananassa HOM05D003318 ORTHO05D004544 1.4e-73 280.8 206 67.5
Lsat_1_v5_gn_4_183240 Lactuca sativa HOM05D003318 ORTHO05D004544 1.4e-73 280.8 212 67.0
Lj5A126T76 Lonicera japonica HOM05D003318 ORTHO05D004544 1.4e-73 280.8 206 69.9
CDE06G1481 Ceratophyllum demersum HOM05D003318 ORTHO05D004544 1.9e-73 280.4 206 67.5
MELO3C002275.2 Cucumis melo HOM05D003318 ORTHO05D004544 1.9e-73 280.4 206 67.5
MD06G1172000 Malus domestica HOM05D003318 ORTHO05D004544 1.9e-73 280.4 206 67.5
Oeu023437.2 Olea europaea HOM05D003318 ORTHO05D004544 1.9e-73 280.4 206 68.0
Sopen06g027840 Solanum pennellii HOM05D003318 ORTHO05D004544 1.9e-73 280.4 207 68.1
Sed0012780 Sechium edule HOM05D003318 ORTHO05D004544 2.5e-73 280.0 206 68.4
FvH4_5g05490 Fragaria vesca HOM05D003318 ORTHO05D004544 3.2e-73 279.6 206 67.0
FAN18G0002 Fragaria x ananassa HOM05D003318 ORTHO05D004544 3.2e-73 279.6 206 67.0
MD14G1177900 Malus domestica HOM05D003318 ORTHO05D004544 3.2e-73 279.6 206 67.0
PGSC0003DMG400031392 Solanum tuberosum HOM05D003318 ORTHO05D004544 3.2e-73 279.6 207 66.2
vmacro19403 Vaccinium macrocarpon HOM05D003318 ORTHO05D004544 3.2e-73 279.6 206 68.9
Ah.02g110590 Amaranthus hybridus HOM05D003318 ORTHO05D004544 4.2e-73 279.3 206 66.5
AUR62030944 Chenopodium quinoa HOM05D003318 ORTHO05D004544 4.2e-73 279.3 206 66.5
Migut.H00094 Erythranthe guttata HOM05D003318 ORTHO05D004544 4.2e-73 279.3 206 67.5
vmacro05848 Vaccinium macrocarpon HOM05D003318 ORTHO05D004544 5.5e-73 278.9 206 67.0
Peaxi162Scf00689g00118 Petunia axillaris HOM05D003318 ORTHO05D004544 7.1e-73 278.5 206 67.5
Prupe.5G171400 Prunus persica HOM05D003318 ORTHO05D004544 7.1e-73 278.5 206 67.0
QL08p043380 Quercus lobata HOM05D003318 ORTHO05D004544 7.1e-73 278.5 206 68.0
Cfa019154 Carpinus fangiana HOM05D003318 ORTHO05D004544 9.3e-73 278.1 206 68.0
HanXRQChr09g0251391 Helianthus annuus HOM05D003318 ORTHO05D004544 9.3e-73 278.1 206 68.4
Rhsim08G0174000 Rhododendron simsii HOM05D003318 ORTHO05D004544 9.3e-73 278.1 206 69.9
Hma1.2p1_2568F.1_g324540 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 1.2e-72 277.7 206 68.4
QL11p012704 Quercus lobata HOM05D003318 ORTHO05D004544 1.2e-72 277.7 206 68.4
SalBow5G2274 Salvia bowleyana HOM05D003318 ORTHO05D004544 1.2e-72 277.7 206 67.5
Sopen12g014750 Solanum pennellii HOM05D003318 ORTHO05D004544 1.2e-72 277.7 206 66.5
Lsat_1_v5_gn_1_28341 Lactuca sativa HOM05D003318 ORTHO05D004544 1.6e-72 277.3 206 68.0
Nn4g22710 Nelumbo nucifera HOM05D003318 ORTHO05D004544 1.6e-72 277.3 206 67.0
RcHm_v2.0_Chr6g0263071 Rosa chinensis HOM05D003318 ORTHO05D004544 1.6e-72 277.3 206 67.0
ClCG01G013250 Citrullus lanatus HOM05D003318 ORTHO05D004544 2.7e-72 276.6 206 68.0
Nitab4.5_0001659g0170 Nicotiana tabacum HOM05D003318 ORTHO05D004544 2.7e-72 276.6 214 66.4
CAN.G1166.8 Capsicum annuum HOM05D003318 ORTHO05D004544 3.5e-72 276.2 206 68.0
Ciclev10020016m.g Citrus clementina HOM05D003318 ORTHO05D004544 3.5e-72 276.2 206 68.0
Haze_07523 Corylus avellana HOM05D003318 ORTHO05D004544 3.5e-72 276.2 206 68.9
PSO017G3133 Papaver somniferum HOM05D003318 ORTHO05D004544 3.5e-72 276.2 206 67.0
MSTRG.24028 Avicennia marina HOM05D003318 ORTHO05D004544 4.6e-72 275.8 206 67.5
Cc04_g12170 Coffea canephora HOM05D003318 ORTHO05D004544 4.6e-72 275.8 206 66.5
FAN18G0175 Fragaria x ananassa HOM05D003318 ORTHO05D004544 4.6e-72 275.8 206 66.5
PSO478G3254 Papaver somniferum HOM05D003318 ORTHO05D004544 4.6e-72 275.8 206 67.5
Solyc12g035190.2 Solanum lycopersicum HOM05D003318 ORTHO05D004544 6.1e-72 275.4 205 66.3
Gohir.D12G275900 Gossypium hirsutum HOM05D003318 ORTHO05D004544 7.9e-72 275.0 206 67.0
Gorai.008G296400 Gossypium raimondii HOM05D003318 ORTHO05D004544 7.9e-72 275.0 206 67.0
Hma1.2p1_0993F.1_g245293 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 7.9e-72 275.0 206 65.5
Hma1.2p1_0999F.1_g246340 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 7.9e-72 275.0 206 65.5
PGR083G1815 Punica granatum HOM05D003318 ORTHO05D004544 7.9e-72 275.0 206 65.0
DCAR_016479 Daucus carota HOM05D003318 ORTHO05D004544 1.0e-71 274.6 206 66.5
Hund02756 Selenicereus undatus HOM05D003318 ORTHO05D004544 1.0e-71 274.6 206 66.5
Dinv20635 Davidia involucrata HOM05D003318 ORTHO05D004544 1.3e-71 274.2 206 65.5
Dinv38569 Davidia involucrata HOM05D003318 ORTHO05D004544 1.3e-71 274.2 206 67.0
ECA232G1375 Erigeron canadensis HOM05D003318 ORTHO05D004544 1.3e-71 274.2 206 66.5
CANSAT80G1582 Cannabis sativa HOM05D003318 ORTHO05D004544 1.8e-71 273.9 206 66.5
Actinidia36099 Actinidia chinensis HOM05D003318 ORTHO05D004544 3.0e-71 273.1 206 66.0
Aqoxy3G01070 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 3.0e-71 273.1 206 66.5
ECA247G3283 Erigeron canadensis HOM05D003318 ORTHO05D004544 3.0e-71 273.1 206 67.0
CsaV3_1G008610 Cucumis sativus L. HOM05D003318 ORTHO05D004544 3.9e-71 272.7 206 66.5
Dinv35091 Davidia involucrata HOM05D003318 ORTHO05D004544 3.9e-71 272.7 206 66.0
AL6G29090 Arabidopsis lyrata HOM05D003318 ORTHO05D004544 5.1e-71 272.3 206 65.5
CSS0041520 Camellia sinensis var. sinensis HOM05D003318 ORTHO05D004544 6.7e-71 271.9 206 67.0
Sabra12G0059400 Salix brachista HOM05D003318 ORTHO05D004544 6.7e-71 271.9 206 65.5
Sp6g26300 Schrenkiella parvula HOM05D003318 ORTHO05D004544 6.7e-71 271.9 206 66.0
DCAR_021707 Daucus carota HOM05D003318 ORTHO05D004544 8.7e-71 271.6 206 66.5
Actinidia33079 Actinidia chinensis HOM05D003318 ORTHO05D004544 1.1e-70 271.2 206 66.5
THA.LOC104820782 Tarenaya hassleriana HOM05D003318 ORTHO05D004544 1.1e-70 271.2 206 66.0
AT5G17990 Arabidopsis thaliana HOM05D003318 ORTHO05D004544 1.5e-70 270.8 206 65.5
Nitab4.5_0006198g0010 Nicotiana tabacum HOM05D003318 ORTHO05D004544 1.9e-70 270.4 220 63.6
CARHR195080 Cardamine hirsuta HOM05D003318 ORTHO05D004544 2.5e-70 270.0 206 64.6
Potri.012G082700 Populus trichocarpa HOM05D003318 ORTHO05D004544 3.3e-70 269.6 206 65.0
Aa31LG11G11520 Aethionema arabicum HOM05D003318 ORTHO05D004544 4.3e-70 269.2 203 66.0
ATR1091G089 Amborella trichopoda HOM05D003318 ORTHO05D004544 4.3e-70 269.2 206 66.0
MBI10_g27994_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 4.3e-70 269.2 206 66.5
Gohir.A12G275200 Gossypium hirsutum HOM05D003318 ORTHO05D004544 5.7e-70 268.9 206 66.0
Peaxi162Scf00700g00534 Petunia axillaris HOM05D003318 ORTHO05D004544 5.7e-70 268.9 206 65.5
MSTRG.11467 Avicennia marina HOM05D003318 ORTHO05D004544 7.4e-70 268.5 206 65.0
BraA10t44214Z Brassica rapa HOM05D003318 ORTHO05D004544 9.7e-70 268.1 206 64.6
Thhalv10013530m.g Eutrema salsugineum HOM05D003318 ORTHO05D004544 9.7e-70 268.1 206 65.0
HanXRQChr09g0254931 Helianthus annuus HOM05D003318 ORTHO05D004544 9.7e-70 268.1 212 64.6
Zm00001eb403640 Zea mays HOM05D003318 ORTHO05D004544 1.3e-69 267.7 206 64.1
BcaC04g18737 Brassica carinata HOM05D003318 ORTHO05D004544 1.6e-69 267.3 206 64.6
C09p59000 Brassica napus HOM05D003318 ORTHO05D004544 1.6e-69 267.3 206 64.6
BolC9t58746H Brassica oleracea HOM05D003318 ORTHO05D004544 1.6e-69 267.3 206 64.6
MBI16_g39220_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 1.6e-69 267.3 206 64.6
A10p21530 Brassica napus HOM05D003318 ORTHO05D004544 2.2e-69 266.9 206 64.6
BcaC03g13562 Brassica carinata HOM05D003318 ORTHO05D004544 2.8e-69 266.5 206 64.6
A02p04620 Brassica napus HOM05D003318 ORTHO05D004544 2.8e-69 266.5 206 64.6
C02p09560 Brassica napus HOM05D003318 ORTHO05D004544 2.8e-69 266.5 206 64.6
BolC2t06863H Brassica oleracea HOM05D003318 ORTHO05D004544 2.8e-69 266.5 206 64.6
BraA02t05423Z Brassica rapa HOM05D003318 ORTHO05D004544 2.8e-69 266.5 206 64.6
Carub.0006s1618 Capsella rubella HOM05D003318 ORTHO05D004544 2.8e-69 266.5 206 65.0
Sabra15G0103300 Salix brachista HOM05D003318 ORTHO05D004544 3.7e-69 266.2 206 64.6
BcaB05g23318 Brassica carinata HOM05D003318 ORTHO05D004544 6.3e-69 265.4 206 64.6
HPP92_007429 Vanilla planifolia HOM05D003318 ORTHO05D004544 8.2e-69 265.0 206 65.0
Os03g0126000 Oryza sativa ssp. japonica HOM05D003318 ORTHO05D004544 1.1e-68 264.6 206 62.6
BcaB08g36721 Brassica carinata HOM05D003318 ORTHO05D004544 3.1e-68 263.1 206 64.1
Oeu016410.1 Olea europaea HOM05D003318 ORTHO05D004544 6.9e-68 261.9 226 61.5
TWI14G1066 Tripterygium wilfordii HOM05D003318 ORTHO05D004544 3.4e-67 259.6 206 66.0
SGA_v2.0_scaffold481G52331 Striga asiatica HOM05D003318 ORTHO05D004544 5.9e-67 258.8 206 63.1
Aa31LG5G14350 Aethionema arabicum HOM05D003318 ORTHO05D004544 1.3e-66 257.7 206 64.1
Mapoly0027s0124 Marchantia polymorpha HOM05D003318 ORTHO05D004544 1.3e-66 257.7 206 60.2
unitig_61.g26476 Utricularia gibba HOM05D003318 ORTHO05D004544 4.2e-65 252.7 192 64.1
SHI00282 Sapria himalayana HOM05D003318 ORTHO05D004544 2.1e-64 250.4 206 60.7
Rhsim10G0019100 Rhododendron simsii HOM05D003318 ORTHO05D004544 7.4e-62 241.9 206 62.6
SalBow1G7854 Salvia bowleyana HOM05D003318 ORTHO05D004544 7.4e-62 241.9 220 56.8
SMO353G0193 Selaginella moellendorffii HOM05D003318 ORTHO05D004544 1.1e-60 238.0 206 58.3
Aqoxy1G03320 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 1.4e-60 237.7 183 64.5
Pp3c17_16690 Physcomitrium patens HOM05D003318 ORTHO05D004544 3.1e-60 236.5 206 57.3
Nitab4.5_0002643g0020 Nicotiana tabacum HOM05D003318 ORTHO05D004544 1.3e-58 231.1 213 58.2
SGA_v2.0_scaffold90G27893 Striga asiatica HOM05D003318 ORTHO05D004544 3.8e-58 229.6 206 59.2
FAN02G4038 Fragaria x ananassa HOM05D003318 ORTHO05D004544 5.0e-58 229.2 193 62.7
Nitab4.5_0002306g0030 Nicotiana tabacum HOM05D003318 ORTHO05D004544 3.6e-56 223.0 199 57.8
EL10Ac5g10728 Beta vulgaris HOM05D003318 ORTHO05D004544 2.0e-54 217.2 206 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2078 Anthoceros agrestis HOM05D003318 ORTHO05D004544 7.4e-54 215.3 182 58.2
PRCOL_00005811 Prasinoderma coloniale HOM05D003318 ORTHO05D004544 4.1e-52 209.5 200 51.0
Duzib205G1868 Durio zibethinus HOM05D003318 ORTHO05D004544 1.3e-50 204.5 236 50.4
Cre10.g429150 Chlamydomonas reinhardtii HOM05D003318 ORTHO05D004544 4.2e-49 199.5 223 46.2
Aqoxy248s001 Aquilegia oxysepala HOM05D003318 ORTHO05D004544 1.1e-44 184.9 165 60.6
RcHm_v2.0_Chr6g0263081 Rosa chinensis HOM05D003318 ORTHO05D004544 4.1e-44 183.0 148 66.2
RcHm_v2.0_Chr6g0263061 Rosa chinensis HOM05D003318 ORTHO05D004544 1.0e-42 178.3 149 65.8
FAN14G3301 Fragaria x ananassa HOM05D003318 ORTHO05D004544 2.3e-39 167.2 181 51.9
CDE07G1695 Ceratophyllum demersum HOM05D003318 ORTHO05D004544 1.4e-36 157.9 206 45.6
MCO09G499 Micromonas commoda HOM05D003318 ORTHO05D004544 2.0e-35 154.1 177 46.9
Actinidia19331 Actinidia chinensis HOM05D003318 ORTHO05D004544 2.7e-35 153.7 137 57.7
Cpa.g.sc928.1 Carica papaya HOM05D003318 ORTHO05D004544 4.5e-35 152.9 88 83.0
SEGI_31346 Sequoiadendron giganteum HOM05D003318 ORTHO05D004544 2.2e-34 150.6 92 75.0
Nitab4.5_0000118g0210 Nicotiana tabacum HOM05D003318 ORTHO05D004544 5.0e-34 149.4 156 51.3
MBI10_g40111_MAGBIO Magnolia biondii HOM05D003318 ORTHO05D004544 4.2e-33 146.4 206 43.7
Cpa.g.c44999 Carica papaya HOM05D003318 ORTHO05D004544 3.0e-31 140.2 85 76.5
Hma1.2p1_0592F.1_g185485 Hydrangea macrophylla HOM05D003318 ORTHO05D004544 4.0e-31 139.8 193 45.1
CAN.G353.17 Capsicum annuum HOM05D003318 ORTHO05D004544 5.2e-31 139.4 83 74.7
Manes.14G064001 Manihot esculenta HOM05D003318 ORTHO05D004544 2.2e-29 134.0 226 38.5
Haze_26927 Corylus avellana HOM05D003318 ORTHO05D004544 1.8e-28 131.0 200 36.5
PGSC0003DMG400018097 Solanum tuberosum HOM05D003318 ORTHO05D009063 1.8e-28 131.0 117 61.5
SEGI_28385 Sequoiadendron giganteum HOM05D003318 ORTHO05D004544 5.4e-28 129.4 84 66.7
CAN.G14.31 Capsicum annuum HOM05D003318 ORTHO05D002824 3.5e-27 126.7 95 66.3
FAN05G0271 Fragaria x ananassa HOM05D003318 ORTHO05D004544 7.2e-25 119.0 70 75.7
Cfa026557 Carpinus fangiana HOM05D003318 ORTHO05D125285 3.9e-18 96.7 207 33.3
AL3G13650 Arabidopsis lyrata HOM05D003318 ORTHO05D004544 3.6e-16 90.1 59 66.1
Haze_10613 Corylus avellana HOM05D003318 ORTHO05D165811 1.2e-11 75.1 72 52.8
Ah.11g051490 Amaranthus hybridus HOM05D003318 ORTHO05D004544 2.7e-11 73.9 187 31.6
Haze_07847 Corylus avellana HOM05D003318 ORTHO05D164064 2.7e-11 73.9 60 55.0
Haze_02771 Corylus avellana HOM05D003318 ORTHO05D163983 3.3e-09 67.0 41 70.7
Haze_20461 Corylus avellana HOM05D003318 ORTHO05D165862 1.2e-08 65.1 69 46.4
Haze_25392 Corylus avellana HOM05D003318 ORTHO05D164178 1.2e-08 65.1 79 46.8
Actinidia04734 Actinidia chinensis HOM05D003318 ORTHO05D004544 1.1e-07 62.0 118 36.4


User provided reference genes

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