Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 2.3e-211 738.8 420 100.0
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.9e-149 533.1 330 91.2
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 7.3e-149 531.2 331 90.6
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 4.4e-146 521.9 331 89.1
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 2.1e-132 476.5 335 83.9
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 3.1e-131 472.6 336 83.0
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 2.8e-124 449.5 331 75.8
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 1.5e-122 443.7 334 71.0
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 2.0e-122 443.4 344 74.4
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 2.0e-122 443.4 333 71.2
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 4.5e-122 442.2 337 71.2
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 4.5e-122 442.2 333 70.9
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 6.5e-121 438.3 331 75.2
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 6.0e-119 431.8 332 77.4
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 1.3e-118 430.6 332 77.4
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 2.3e-118 429.9 341 71.3
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 5.1e-118 428.7 339 77.0
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 6.7e-118 428.3 330 72.1
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 1.9e-117 426.8 331 76.7
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 1.3e-116 424.1 330 68.8
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 6.3e-116 421.8 339 68.1
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 2.4e-115 419.9 339 75.5
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 3.1e-115 419.5 330 77.6
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 2.0e-114 416.8 349 66.2
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 4.5e-114 415.6 333 74.8
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 5.9e-114 415.2 335 70.7
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 1.3e-113 414.1 358 71.2
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 2.2e-113 413.3 332 75.6
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 2.2e-113 413.3 354 68.6
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 2.2e-113 413.3 330 74.2
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 2.9e-113 412.9 330 74.8
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 5.0e-113 412.1 336 70.2
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 6.5e-113 411.8 337 71.5
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 1.1e-112 411.0 333 75.4
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 1.4e-112 410.6 358 62.0
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 3.2e-112 409.5 340 68.2
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 1.6e-111 407.1 338 73.7
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 2.7e-111 406.4 335 73.4
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 6.1e-111 405.2 338 74.0
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 1.3e-110 404.1 363 64.5
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 5.1e-110 402.1 329 75.4
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 8.8e-110 401.4 330 72.4
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 8.8e-110 401.4 360 67.2
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 8.8e-110 401.4 348 71.8
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 1.9e-109 400.2 347 68.6
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 2.5e-109 399.8 332 73.5
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 1.3e-108 397.5 356 67.4
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 2.8e-108 396.4 351 70.4
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 6.3e-108 395.2 348 69.5
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.1e-107 394.4 334 68.6
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 2.4e-107 393.3 355 67.0
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 2.4e-107 393.3 374 58.8
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 7.7e-106 388.3 346 69.7
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 3.8e-105 386.0 333 62.5
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.4e-104 384.0 342 69.3
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.5e-104 383.3 333 62.5
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 9.4e-104 381.3 337 65.6
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 6.1e-103 378.6 350 65.7
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 1.0e-102 377.9 342 63.2
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.7e-102 375.2 343 66.2
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 6.7e-102 375.2 345 65.5
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 1.1e-101 374.4 330 64.8
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.7e-100 370.5 350 63.4
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 3.7e-100 369.4 342 63.5
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.4e-99 367.5 348 63.5
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 3.1e-99 366.3 344 62.2
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 1.5e-98 364.0 348 64.7
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 4.5e-98 362.5 357 59.4
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 5.9e-98 362.1 347 66.9
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 7.7e-98 361.7 326 66.3
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 1.3e-97 360.9 337 66.5
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 1.7e-97 360.5 348 61.5
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 1.7e-97 360.5 348 61.5
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 2.9e-97 359.8 341 63.3
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 3.8e-97 359.4 335 60.0
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 8.5e-97 358.2 342 66.7
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 1.4e-96 357.5 350 62.6
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 7.2e-96 355.1 350 60.9
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 7.2e-96 355.1 350 60.9
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 1.2e-95 354.4 352 62.2
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 6.1e-95 352.1 343 62.1
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 3.9e-94 349.4 286 69.6
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 6.7e-94 348.6 346 62.7
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 2.6e-93 346.7 309 68.9
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 4.4e-93 345.9 346 61.8
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 4.4e-93 345.9 344 64.8
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 5.7e-93 345.5 452 49.8
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 9.7e-93 344.7 341 64.2
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 1.7e-92 344.0 348 61.5
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 2.8e-92 343.2 343 60.6
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 3.7e-92 342.8 279 77.1
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 2.4e-91 340.1 330 60.0
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 2.4e-91 340.1 348 64.1
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 3.1e-91 339.7 344 64.2
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 3.1e-91 339.7 344 64.2
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 5.3e-91 339.0 286 72.4
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 7.0e-91 338.6 403 57.1
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 1.6e-90 337.4 351 60.1
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 4.5e-90 335.9 330 60.0
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 1.7e-89 334.0 348 63.5
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.7e-89 334.0 304 62.2
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 6.5e-89 332.0 342 57.6
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 8.5e-89 331.6 371 57.7
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 1.5e-88 330.9 352 60.8
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 1.9e-88 330.5 243 77.4
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 1.2e-87 327.8 285 73.3
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 1.6e-87 327.4 242 80.6
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 1.2e-85 321.2 305 64.3
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 4.4e-85 319.3 343 62.1
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.4e-85 319.3 343 58.0
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 5.7e-85 318.9 346 61.3
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 9.7e-85 318.2 346 61.0
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 9.7e-85 318.2 281 68.3
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.4e-83 314.3 343 58.3
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 5.3e-83 312.4 368 54.1
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.3e-81 307.8 362 56.6
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 3.8e-81 306.2 285 58.6
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 5.0e-81 305.8 350 53.1
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 1.4e-75 287.7 350 53.4
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 2.0e-74 283.9 353 49.6
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 3.3e-72 276.6 294 59.9
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 2.8e-71 273.5 350 54.9
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 9.8e-69 265.0 311 49.2
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 1.2e-66 258.1 276 56.5
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.5e-64 251.1 367 46.3
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 2.1e-63 247.3 281 50.9
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 3.6e-63 246.5 299 47.2
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.7e-60 237.7 287 51.2
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 3.2e-59 233.4 277 48.4
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 6.0e-58 229.2 112 95.5
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 4.7e-55 219.5 161 70.8
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 1.3e-52 211.5 110 90.9
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 2.1e-47 194.1 154 70.8
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 2.4e-35 154.1 262 38.2
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 1.7e-33 147.9 72 95.8
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 5.4e-27 126.3 105 62.9
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.3e-25 121.7 65 86.2
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 8.7e-25 119.0 275 32.7
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 5.6e-24 116.3 56 96.4
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 1.1e-22 112.1 56 91.1
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 1.6e-18 98.2 114 50.9
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.1e-18 97.8 110 50.0
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.6e-15 88.2 78 52.6
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 1.4e-11 75.1 34 97.1


User provided reference genes

Program Settings