Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25882 Trifolium pratense HOM05D003577 ORTHO05D004663 1.9e-160 569.3 323 100.0
Psat6g166680 Pisum sativum HOM05D003577 ORTHO05D004663 3.2e-152 542.0 351 81.8
Medtr5g012390 Medicago truncatula HOM05D003577 ORTHO05D004663 1.3e-150 536.6 351 81.2
Ca_24570_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 1.6e-148 529.6 351 80.1
Glyma.01G210400 Glycine max HOM05D003577 ORTHO05D004663 1.0e-137 493.8 351 73.5
CiPaw.12G108500 Carya illinoinensis HOM05D003577 ORTHO05D004663 1.3e-134 483.4 351 72.1
Phvul.002G062000 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 2.5e-133 479.2 351 71.8
Prupe.1G339800 Prunus persica HOM05D003577 ORTHO05D004663 9.6e-133 477.2 350 70.6
Nitab4.5_0006367g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 2.1e-132 476.1 351 70.7
Cfa012750 Carpinus fangiana HOM05D003577 ORTHO05D004663 3.7e-132 475.3 351 70.7
Ciclev10020910m.g Citrus clementina HOM05D003577 ORTHO05D004663 6.3e-132 474.6 351 70.4
FAN08G3105 Fragaria x ananassa HOM05D003577 ORTHO05D004663 1.1e-131 473.8 351 70.4
Medtr4g101130 Medicago truncatula HOM05D003577 ORTHO05D004663 1.1e-131 473.8 351 72.1
GSVIVG01001303001 Vitis vinifera HOM05D003577 ORTHO05D004663 1.1e-131 473.8 351 70.1
Peaxi162Scf00102g01136 Petunia axillaris HOM05D003577 ORTHO05D004663 1.4e-131 473.4 351 70.7
FAN04G1063 Fragaria x ananassa HOM05D003577 ORTHO05D004663 1.8e-131 473.0 351 70.7
VMungo1215G0981 Vigna mungo HOM05D003577 ORTHO05D004663 1.8e-131 473.0 351 71.2
Haze_07878 Corylus avellana HOM05D003577 ORTHO05D004663 2.4e-131 472.6 351 70.7
QL12p012789 Quercus lobata HOM05D003577 ORTHO05D004663 2.4e-131 472.6 350 70.3
Sopen08g027320 Solanum pennellii HOM05D003577 ORTHO05D004663 5.3e-131 471.5 351 70.4
QL12p012756 Quercus lobata HOM05D003577 ORTHO05D004663 6.9e-131 471.1 350 70.3
MD16G1010900 Malus domestica HOM05D003577 ORTHO05D004663 9.0e-131 470.7 350 69.7
Manes.01G079100 Manihot esculenta HOM05D003577 ORTHO05D004663 1.2e-130 470.3 351 70.1
MELO3C005539.2 Cucumis melo HOM05D003577 ORTHO05D004663 1.5e-130 469.9 351 70.4
Glyma.05G058100 Glycine max HOM05D003577 ORTHO05D004663 1.5e-130 469.9 351 70.9
Actinidia02117 Actinidia chinensis HOM05D003577 ORTHO05D004663 2.6e-130 469.2 351 70.1
Peaxi162Scf00002g01511 Petunia axillaris HOM05D003577 ORTHO05D004663 2.6e-130 469.2 351 70.4
Solyc08g078850.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 2.6e-130 469.2 351 70.1
TWI15G1033 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 2.6e-130 469.2 351 69.8
CSS0037300 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 3.4e-130 468.8 351 69.5
ClCG01G003970 Citrullus lanatus HOM05D003577 ORTHO05D004663 3.4e-130 468.8 351 69.8
Glyma.17G140600 Glycine max HOM05D003577 ORTHO05D004663 7.6e-130 467.6 351 70.7
Lalb_Chr05g0225731 Lupinus albus HOM05D003577 ORTHO05D004663 7.6e-130 467.6 351 69.8
FAN18G1797 Fragaria x ananassa HOM05D003577 ORTHO05D004663 1.3e-129 466.8 351 69.8
arahy.Tifrunner.gnm1.ann1.BE9V1M Arachis hypogaea HOM05D003577 ORTHO05D004663 1.7e-129 466.5 351 70.9
TWI15G0060 Tripterygium wilfordii HOM05D003577 ORTHO05D004663 1.7e-129 466.5 351 69.2
Gohir.A12G219850 Gossypium hirsutum HOM05D003577 ORTHO05D004663 2.9e-129 465.7 351 68.9
FvH4_5g00090 Fragaria vesca HOM05D003577 ORTHO05D004663 3.8e-129 465.3 351 69.8
Gohir.D12G222000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 5.0e-129 464.9 351 68.9
RcHm_v2.0_Chr7g0202841 Rosa chinensis HOM05D003577 ORTHO05D004663 5.0e-129 464.9 351 69.5
CsaV3_5G004150 Cucumis sativus L. HOM05D003577 ORTHO05D004663 6.5e-129 464.5 351 69.8
arahy.Tifrunner.gnm1.ann1.5G087V Arachis hypogaea HOM05D003577 ORTHO05D004663 8.5e-129 464.2 351 70.7
PGSC0003DMG400004800 Solanum tuberosum HOM05D003577 ORTHO05D004663 8.5e-129 464.2 351 69.5
DCAR_006822 Daucus carota HOM05D003577 ORTHO05D004663 1.9e-128 463.0 351 68.9
Gohir.D08G190300 Gossypium hirsutum HOM05D003577 ORTHO05D004663 1.9e-128 463.0 351 69.2
Nitab4.5_0000312g0260 Nicotiana tabacum HOM05D003577 ORTHO05D004663 1.9e-128 463.0 351 69.8
VMungo0251G3133 Vigna mungo HOM05D003577 ORTHO05D004663 1.9e-128 463.0 351 70.7
Duzib084G0825 Durio zibethinus HOM05D003577 ORTHO05D004663 2.5e-128 462.6 351 69.2
Gorai.009G297700 Gossypium raimondii HOM05D003577 ORTHO05D004663 2.5e-128 462.6 351 69.2
CAN.G1218.7 Capsicum annuum HOM05D003577 ORTHO05D004663 4.2e-128 461.8 351 68.9
Duzib205G2002 Durio zibethinus HOM05D003577 ORTHO05D004663 4.2e-128 461.8 349 69.1
Gohir.A08G171900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 4.2e-128 461.8 351 69.2
Potri.001G122400 Populus trichocarpa HOM05D003577 ORTHO05D004663 4.2e-128 461.8 351 69.2
Prupe.5G072700 Prunus persica HOM05D003577 ORTHO05D004663 4.2e-128 461.8 351 69.5
QL12p012793 Quercus lobata HOM05D003577 ORTHO05D004663 4.2e-128 461.8 350 68.9
Atru.chr9.1341 Acer truncatum HOM05D003577 ORTHO05D004663 5.5e-128 461.5 352 69.3
Actinidia14440 Actinidia chinensis HOM05D003577 ORTHO05D004663 7.2e-128 461.1 351 68.7
TAR263G0002 Trochodendron aralioides HOM05D003577 ORTHO05D004663 7.2e-128 461.1 352 69.9
CiPaw.11G152300 Carya illinoinensis HOM05D003577 ORTHO05D004663 9.3e-128 460.7 351 68.9
Manes.02G038200 Manihot esculenta HOM05D003577 ORTHO05D004663 9.3e-128 460.7 351 68.7
Phvul.003G219400 Phaseolus vulgaris HOM05D003577 ORTHO05D004663 9.3e-128 460.7 351 69.8
Thecc.03G254200 Theobroma cacao HOM05D003577 ORTHO05D004663 9.3e-128 460.7 351 69.2
Psat4g070040 Pisum sativum HOM05D003577 ORTHO05D004663 1.2e-127 460.3 352 71.6
RcHm_v2.0_Chr4g0445541 Rosa chinensis HOM05D003577 ORTHO05D004663 1.2e-127 460.3 350 68.3
TAR375G0076 Trochodendron aralioides HOM05D003577 ORTHO05D004663 1.2e-127 460.3 352 69.6
Cpa.g.sc29.108 Carica papaya HOM05D003577 ORTHO05D004663 1.6e-127 459.9 351 68.4
CANSAT21G0247 Cannabis sativa HOM05D003577 ORTHO05D004663 2.1e-127 459.5 351 68.7
Lj4g0018948 Lotus japonicus HOM05D003577 ORTHO05D004663 2.7e-127 459.1 351 69.5
PGR042G0879 Punica granatum HOM05D003577 ORTHO05D004663 3.6e-127 458.8 351 68.7
Sed0005868 Sechium edule HOM05D003577 ORTHO05D004663 4.6e-127 458.4 354 68.4
Gorai.008G238000 Gossypium raimondii HOM05D003577 ORTHO05D004663 6.1e-127 458.0 351 68.4
SalBow6G4668 Salvia bowleyana HOM05D003577 ORTHO05D004663 5.1e-126 454.9 351 66.4
Dinv39124 Davidia involucrata HOM05D003577 ORTHO05D004663 1.5e-125 453.4 351 67.5
Gorai.003G170500 Gossypium raimondii HOM05D003577 ORTHO05D004663 3.3e-125 452.2 351 67.0
Lj2C215G3 Lonicera japonica HOM05D003577 ORTHO05D004663 3.3e-125 452.2 351 67.5
DCAR_027785 Daucus carota HOM05D003577 ORTHO05D004663 4.3e-125 451.8 351 67.8
Solyc08g007420.3 Solanum lycopersicum HOM05D003577 ORTHO05D004663 5.7e-125 451.4 347 68.0
Sopen08g003370 Solanum pennellii HOM05D003577 ORTHO05D004663 5.7e-125 451.4 347 68.0
Gohir.D03G162000 Gossypium hirsutum HOM05D003577 ORTHO05D004663 9.7e-125 450.7 351 66.7
Atru.chr9.1342 Acer truncatum HOM05D003577 ORTHO05D004663 2.8e-124 449.1 352 67.9
PGSC0003DMG400012478 Solanum tuberosum HOM05D003577 ORTHO05D004663 2.8e-124 449.1 347 67.7
Eucgr.E00444 Eucalyptus grandis HOM05D003577 ORTHO05D004663 8.2e-124 447.6 350 66.3
Eucgr.D02046 Eucalyptus grandis HOM05D003577 ORTHO05D004663 1.4e-123 446.8 352 63.9
Psat4g070120 Pisum sativum HOM05D003577 ORTHO05D004663 5.3e-123 444.9 352 69.3
Sp7g16910 Schrenkiella parvula HOM05D003577 ORTHO05D004663 9.1e-123 444.1 351 65.2
CSS0040266 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 1.5e-122 443.4 351 67.2
Aqoxy5G03916 Aquilegia oxysepala HOM05D003577 ORTHO05D004663 2.6e-122 442.6 351 67.0
Cc08_g12710 Coffea canephora HOM05D003577 ORTHO05D004663 2.6e-122 442.6 353 65.7
ECA233G5538 Erigeron canadensis HOM05D003577 ORTHO05D004663 3.4e-122 442.2 351 66.1
Thhalv10025596m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 1.0e-121 440.7 350 65.4
A01p20100 Brassica napus HOM05D003577 ORTHO05D004663 1.3e-121 440.3 351 64.7
BraA01t01934Z Brassica rapa HOM05D003577 ORTHO05D004663 1.3e-121 440.3 351 64.7
HanXRQChr13g0396351 Helianthus annuus HOM05D003577 ORTHO05D004663 1.3e-121 440.3 351 65.5
Sabra03G0077100 Salix brachista HOM05D003577 ORTHO05D004663 1.3e-121 440.3 351 66.1
BcaC09g50459 Brassica carinata HOM05D003577 ORTHO05D004663 2.9e-121 439.1 351 64.7
BcaNung03469 Brassica carinata HOM05D003577 ORTHO05D004663 2.9e-121 439.1 351 64.7
C01p25250 Brassica napus HOM05D003577 ORTHO05D004663 2.9e-121 439.1 351 64.7
BolC1t02475H Brassica oleracea HOM05D003577 ORTHO05D004663 2.9e-121 439.1 351 64.7
BraA03t14127Z Brassica rapa HOM05D003577 ORTHO05D004663 2.9e-121 439.1 351 64.7
Sabra01G0094200 Salix brachista HOM05D003577 ORTHO05D004663 3.8e-121 438.7 351 67.2
THA.LOC104813333 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 3.8e-121 438.7 354 65.3
Lsat_1_v5_gn_6_3021 Lactuca sativa HOM05D003577 ORTHO05D004663 5.0e-121 438.3 354 65.8
Nn6g34004 Nelumbo nucifera HOM05D003577 ORTHO05D004663 5.0e-121 438.3 352 66.2
Nn6g34005 Nelumbo nucifera HOM05D003577 ORTHO05D004663 5.0e-121 438.3 336 68.5
Thhalv10025435m.g Eutrema salsugineum HOM05D003577 ORTHO05D004663 8.5e-121 437.6 350 65.1
Hund11614 Selenicereus undatus HOM05D003577 ORTHO05D004663 8.5e-121 437.6 352 66.5
Migut.A00960 Erythranthe guttata HOM05D003577 ORTHO05D004663 1.1e-120 437.2 351 64.1
Lsat_1_v5_gn_3_740 Lactuca sativa HOM05D003577 ORTHO05D004663 1.1e-120 437.2 351 66.4
vmacro14092 Vaccinium macrocarpon HOM05D003577 ORTHO05D004663 1.1e-120 437.2 351 65.5
BcaC06g33546 Brassica carinata HOM05D003577 ORTHO05D004663 1.4e-120 436.8 351 64.4
BolC7t45376H Brassica oleracea HOM05D003577 ORTHO05D004663 1.4e-120 436.8 351 64.4
RcHm_v2.0_Chr4g0406091 Rosa chinensis HOM05D003577 ORTHO05D004663 1.9e-120 436.4 350 66.3
AL7G37440 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 2.5e-120 436.0 354 64.1
Sc22g0000780 Simmondsia chinensis HOM05D003577 ORTHO05D004663 2.5e-120 436.0 352 63.9
AUR62039952 Chenopodium quinoa HOM05D003577 ORTHO05D004663 4.2e-120 435.3 351 65.8
Ah.12g056680 Amaranthus hybridus HOM05D003577 ORTHO05D004663 5.5e-120 434.9 351 65.2
Carub.0007s2413 Capsella rubella HOM05D003577 ORTHO05D004663 9.4e-120 434.1 354 64.4
Aa31LG6G2900 Aethionema arabicum HOM05D003577 ORTHO05D004663 1.2e-119 433.7 351 64.7
AUR62007499 Chenopodium quinoa HOM05D003577 ORTHO05D004663 1.6e-119 433.3 351 65.8
HanXRQChr06g0164341 Helianthus annuus HOM05D003577 ORTHO05D004663 1.6e-119 433.3 351 65.2
BcaNung00105 Brassica carinata HOM05D003577 ORTHO05D004663 2.1e-119 433.0 351 63.8
Cc08_g12720 Coffea canephora HOM05D003577 ORTHO05D004663 2.7e-119 432.6 353 64.3
CARHR223890 Cardamine hirsuta HOM05D003577 ORTHO05D004663 3.6e-119 432.2 354 63.8
HanXRQChr17g0549811 Helianthus annuus HOM05D003577 ORTHO05D004663 4.6e-119 431.8 348 64.7
CSS0016480 Camellia sinensis var. sinensis HOM05D003577 ORTHO05D004663 7.9e-119 431.0 351 65.2
CAN.G1227.9 Capsicum annuum HOM05D003577 ORTHO05D004663 7.9e-119 431.0 329 69.0
AT4G17260 Arabidopsis thaliana HOM05D003577 ORTHO05D004663 1.0e-118 430.6 354 63.6
MSTRG.12085 Avicennia marina HOM05D003577 ORTHO05D004663 1.0e-118 430.6 351 64.1
SGA_v2.0_scaffold146G36158 Striga asiatica HOM05D003577 ORTHO05D004663 3.0e-118 429.1 351 63.0
Hma1.2p1_0753F.1_g212980 Hydrangea macrophylla HOM05D003577 ORTHO05D004663 3.9e-118 428.7 353 65.7
SalBow6G1855 Salvia bowleyana HOM05D003577 ORTHO05D004663 3.9e-118 428.7 351 63.8
PGR031G3899 Punica granatum HOM05D003577 ORTHO05D004663 1.1e-117 427.2 351 63.5
EL10Ac5g13048 Beta vulgaris HOM05D003577 ORTHO05D004663 2.0e-117 426.4 351 63.5
PSO782G2886 Papaver somniferum HOM05D003577 ORTHO05D004663 4.8e-116 421.8 352 63.6
MBI04_g03669_MAGBIO Magnolia biondii HOM05D003577 ORTHO05D004663 4.5e-114 415.2 338 64.5
unitig_0.g1061 Utricularia gibba HOM05D003577 ORTHO05D004663 1.3e-113 413.7 348 61.2
CDE12G0646 Ceratophyllum demersum HOM05D003577 ORTHO05D004663 2.9e-113 412.5 349 63.3
Lj2g0000249 Lotus japonicus HOM05D003577 ORTHO05D004663 5.0e-113 411.8 351 64.7
CANSAT21G2077 Cannabis sativa HOM05D003577 ORTHO05D004663 1.2e-111 407.1 350 63.7
THA.LOC104798465 Tarenaya hassleriana HOM05D003577 ORTHO05D004663 4.7e-111 405.2 333 64.0
Ah.02g116790 Amaranthus hybridus HOM05D003577 ORTHO05D004663 5.7e-109 398.3 351 60.1
unitig_0.g1064 Utricularia gibba HOM05D003577 ORTHO05D004663 7.4e-109 397.9 345 59.1
SEGI_01079 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.2e-108 396.4 351 60.1
Gohir.A03G008900 Gossypium hirsutum HOM05D003577 ORTHO05D004663 5.3e-107 391.7 302 67.9
Nitab4.5_0012654g0010 Nicotiana tabacum HOM05D003577 ORTHO05D004663 9.1e-107 391.0 506 47.4
GSVIVG01027640001 Vitis vinifera HOM05D003577 ORTHO05D004663 1.0e-102 377.5 348 59.8
SEGI_40617 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 8.2e-100 367.9 351 56.1
SEGI_41296 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 1.8e-99 366.7 351 55.6
Potri.003G111201 Populus trichocarpa HOM05D003577 ORTHO05D004663 2.4e-99 366.3 213 83.6
Zm00001eb229430 Zea mays HOM05D003577 ORTHO05D004663 2.7e-95 352.8 357 54.3
SEGI_37574 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 2.3e-94 349.7 331 56.2
Os02g0105400 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 1.8e-91 340.1 346 53.8
Zm00001eb229440 Zea mays HOM05D003577 ORTHO05D004663 3.1e-91 339.3 356 52.5
SEGI_18702 Sequoiadendron giganteum HOM05D003577 ORTHO05D004663 5.9e-90 335.1 332 55.4
AagrBONN_evm.TU.Sc2ySwM_228.3813 Anthoceros agrestis HOM05D003577 ORTHO05D004663 9.5e-88 327.8 319 54.5
Pp3c22_12920 Physcomitrium patens HOM05D003577 ORTHO05D004663 9.5e-88 327.8 332 51.8
ATR0681G358 Amborella trichopoda HOM05D003577 ORTHO05D004663 2.8e-87 326.2 351 51.6
Pp3c21_11360 Physcomitrium patens HOM05D003577 ORTHO05D004663 1.8e-86 323.6 335 49.6
Pp3c18_10120 Physcomitrium patens HOM05D003577 ORTHO05D004663 4.9e-84 315.5 335 48.4
Os06g0104900 Oryza sativa ssp. japonica HOM05D003577 ORTHO05D004663 1.3e-81 307.4 363 51.0
Nitab4.5_0004059g0040 Nicotiana tabacum HOM05D003577 ORTHO05D004663 3.6e-79 299.3 351 50.4
CBR_g24220 Chara braunii HOM05D003577 ORTHO05D004663 1.2e-77 294.3 338 46.7
Mapoly0049s0082 Marchantia polymorpha HOM05D003577 ORTHO05D004663 7.5e-77 291.6 318 48.4
Potri.008G135920 Populus trichocarpa HOM05D003577 ORTHO05D004663 3.5e-74 282.7 242 63.6
Ca_21954_v3 Cicer arietinum L. HOM05D003577 ORTHO05D034586 2.7e-66 256.5 149 86.6
SMO356G0074 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 2.3e-65 253.4 301 47.2
SMO116G0389 Selaginella moellendorffii HOM05D003577 ORTHO05D004663 1.5e-64 250.8 323 40.9
TPR.G29019 Trifolium pratense HOM05D003577 ORTHO05D034586 3.3e-64 249.6 148 85.1
PSO063G0544 Papaver somniferum HOM05D003577 ORTHO05D034586 2.6e-61 240.0 149 77.9
TPR.G37704 Trifolium pratense HOM05D003577 ORTHO05D005607 6.6e-57 225.3 206 60.7
Oeu062976.1 Olea europaea HOM05D003577 ORTHO05D004663 3.3e-56 223.0 203 60.1
C07p48690 Brassica napus HOM05D003577 ORTHO05D004663 6.0e-50 202.2 203 54.7
CAN.G1227.7 Capsicum annuum HOM05D003577 ORTHO05D004663 8.1e-47 191.8 112 83.0
LjContig00155g0022757 Lotus japonicus HOM05D003577 ORTHO05D004663 4.9e-36 156.0 147 59.2
FAN11G0798 Fragaria x ananassa HOM05D003577 ORTHO05D045731 3.3e-32 143.3 202 40.1
Ca_13887_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 7.4e-24 115.5 69 79.7
Ca_20701_v3 Cicer arietinum L. HOM05D003577 ORTHO05D004663 7.4e-24 115.5 69 79.7
FvH4_3g30630 Fragaria vesca HOM05D003577 ORTHO05D045731 4.0e-22 109.8 121 46.3
AL5G17860 Arabidopsis lyrata HOM05D003577 ORTHO05D004663 3.2e-19 100.1 65 73.8
FAN25G2773 Fragaria x ananassa HOM05D003577 ORTHO05D025039 4.6e-18 96.3 132 45.5
VMungo0720G2534 Vigna mungo HOM05D003577 ORTHO05D435637 1.1e-14 85.1 64 70.3
Prupe.6G054700 Prunus persica HOM05D003577 ORTHO05D044351 6.5e-12 75.9 55 76.4
SalBow1G7535 Salvia bowleyana HOM05D003577 ORTHO05D351489 1.1e-11 75.1 162 39.5


User provided reference genes

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