Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25879 Trifolium pratense HOM05D005354 ORTHO05D006315 1.8e-276 955.3 493 100.0
Medtr5g012530 Medicago truncatula HOM05D005354 ORTHO05D006315 1.7e-245 852.4 493 87.8
Psat2g177520 Pisum sativum HOM05D005354 ORTHO05D006315 1.2e-243 846.3 493 87.0
Ca_24574_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 3.8e-237 824.7 493 84.8
Lj2g0013106 Lotus japonicus HOM05D005354 ORTHO05D006315 4.9e-221 771.2 493 78.9
arahy.Tifrunner.gnm1.ann1.BT71C1 Arachis hypogaea HOM05D005354 ORTHO05D006315 6.4e-221 770.8 493 77.5
arahy.Tifrunner.gnm1.ann1.LCH2QT Arachis hypogaea HOM05D005354 ORTHO05D006315 6.4e-221 770.8 493 77.5
Lalb_Chr09g0324401 Lupinus albus HOM05D005354 ORTHO05D006315 9.0e-215 750.4 490 75.9
Phvul.002G062800 Phaseolus vulgaris HOM05D005354 ORTHO05D006315 2.5e-212 742.3 493 75.5
Lalb_Chr05g0214491 Lupinus albus HOM05D005354 ORTHO05D006315 3.5e-211 738.4 493 74.8
Glyma.01G209800 Glycine max HOM05D005354 ORTHO05D006315 3.9e-210 734.9 486 76.7
VMungo1215G2766 Vigna mungo HOM05D005354 ORTHO05D006315 1.0e-202 710.3 475 76.0
QL12p012213 Quercus lobata HOM05D005354 ORTHO05D006315 2.9e-197 692.2 492 69.9
TWI81G0349 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 4.4e-193 678.3 493 68.6
Sed0003796 Sechium edule HOM05D005354 ORTHO05D006315 1.3e-192 676.8 487 69.2
CAN.G1367.6 Capsicum annuum HOM05D005354 ORTHO05D006315 1.2e-190 670.2 491 67.0
Nitab4.5_0007598g0020 Nicotiana tabacum HOM05D005354 ORTHO05D006315 1.5e-190 669.8 493 67.3
Actinidia27464 Actinidia chinensis HOM05D005354 ORTHO05D006315 2.0e-190 669.5 493 67.5
CsaV3_3G002740 Cucumis sativus L. HOM05D005354 ORTHO05D006315 2.0e-190 669.5 487 67.8
Nitab4.5_0000312g0100 Nicotiana tabacum HOM05D005354 ORTHO05D006315 4.5e-190 668.3 493 66.9
Potri.001G158200 Populus trichocarpa HOM05D005354 ORTHO05D006315 1.0e-189 667.2 493 67.3
TWI60G0726 Tripterygium wilfordii HOM05D005354 ORTHO05D006315 3.8e-189 665.2 493 68.4
Ciclev10019626m.g Citrus clementina HOM05D005354 ORTHO05D006315 5.0e-189 664.8 493 65.9
CANSAT21G0216 Cannabis sativa HOM05D005354 ORTHO05D006315 6.5e-189 664.5 494 67.8
Rhsim07G0108200 Rhododendron simsii HOM05D005354 ORTHO05D006315 1.4e-188 663.3 493 66.7
CiPaw.11G153900 Carya illinoinensis HOM05D005354 ORTHO05D006315 3.2e-188 662.1 493 67.3
Sopen08g027140 Solanum pennellii HOM05D005354 ORTHO05D006315 1.2e-187 660.2 493 65.9
Manes.02G039200 Manihot esculenta HOM05D005354 ORTHO05D006315 1.6e-187 659.8 493 67.3
Oeu040216.1 Olea europaea HOM05D005354 ORTHO05D006315 1.6e-187 659.8 493 64.7
Solyc08g078660.3 Solanum lycopersicum HOM05D005354 ORTHO05D006315 2.1e-187 659.4 493 65.7
GSVIVG01001321001 Vitis vinifera HOM05D005354 ORTHO05D006315 4.7e-187 658.3 491 67.4
Cc08_g12480 Coffea canephora HOM05D005354 ORTHO05D006315 1.4e-186 656.8 493 64.9
vmacro14088 Vaccinium macrocarpon HOM05D005354 ORTHO05D006315 1.8e-186 656.4 491 67.6
MELO3C013942.2 Cucumis melo HOM05D005354 ORTHO05D006315 2.3e-186 656.0 513 64.5
MBI04_g09494_MAGBIO Magnolia biondii HOM05D005354 ORTHO05D006315 2.3e-186 656.0 493 66.1
Sc01g0008460 Simmondsia chinensis HOM05D005354 ORTHO05D006315 6.7e-186 654.4 520 63.1
Manes.01G080300 Manihot esculenta HOM05D005354 ORTHO05D006315 1.1e-185 653.7 493 67.5
Nn1g01007 Nelumbo nucifera HOM05D005354 ORTHO05D006315 1.5e-185 653.3 493 67.1
Potri.003G076600 Populus trichocarpa HOM05D005354 ORTHO05D006315 2.0e-185 652.9 487 67.4
ClCG10G002710 Citrullus lanatus HOM05D005354 ORTHO05D006315 2.6e-185 652.5 512 64.6
Prupe.5G069200 Prunus persica HOM05D005354 ORTHO05D006315 2.2e-184 649.4 493 66.9
CSS0011263 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 6.3e-184 647.9 493 66.3
MD06G1057900 Malus domestica HOM05D005354 ORTHO05D006315 6.3e-184 647.9 493 65.9
RcHm_v2.0_Chr7g0203181 Rosa chinensis HOM05D005354 ORTHO05D006315 2.4e-183 646.0 493 65.7
Glyma.11G032400 Glycine max HOM05D005354 ORTHO05D006315 4.1e-183 645.2 432 76.2
MSTRG.25527 Avicennia marina HOM05D005354 ORTHO05D006315 1.2e-182 643.7 492 64.0
Eucgr.E00426 Eucalyptus grandis HOM05D005354 ORTHO05D006315 4.5e-182 641.7 495 65.9
CSS0003507 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.7e-181 639.8 478 67.6
CSS0039308 Camellia sinensis var. sinensis HOM05D005354 ORTHO05D006315 1.7e-181 639.8 478 67.6
SGA_v2.0_scaffold54G19448 Striga asiatica HOM05D005354 ORTHO05D006315 1.7e-181 639.8 493 64.1
Ah.02g116720 Amaranthus hybridus HOM05D005354 ORTHO05D006315 2.9e-181 639.0 496 64.7
Aqoxy7G00759 Aquilegia oxysepala HOM05D005354 ORTHO05D006315 1.1e-180 637.1 492 63.8
Sabra01G0133300 Salix brachista HOM05D005354 ORTHO05D006315 1.5e-180 636.7 539 60.9
Thecc.03G252000 Theobroma cacao HOM05D005354 ORTHO05D006315 2.5e-180 636.0 493 64.5
EL10Ac5g13072 Beta vulgaris HOM05D005354 ORTHO05D006315 4.2e-180 635.2 493 64.5
FvH4_5g18830 Fragaria vesca HOM05D005354 ORTHO05D006315 1.2e-179 633.6 493 64.3
Haze_07917 Corylus avellana HOM05D005354 ORTHO05D006315 1.6e-179 633.3 537 61.6
Atru.chr9.1319 Acer truncatum HOM05D005354 ORTHO05D006315 1.8e-178 629.8 493 64.3
FAN13G0823 Fragaria x ananassa HOM05D005354 ORTHO05D006315 1.8e-178 629.8 493 64.1
TAR629G2416 Trochodendron aralioides HOM05D005354 ORTHO05D006315 1.8e-178 629.8 490 64.1
COL.COLO4_37182 Corchorus olitorius HOM05D005354 ORTHO05D006315 2.3e-178 629.4 493 62.3
PSO017G6196 Papaver somniferum HOM05D005354 ORTHO05D006315 2.3e-178 629.4 493 63.7
FAN04G2371 Fragaria x ananassa HOM05D005354 ORTHO05D006315 3.0e-178 629.0 493 63.9
FAN18G0938 Fragaria x ananassa HOM05D005354 ORTHO05D006315 4.0e-178 628.6 494 64.2
FAN08G0881 Fragaria x ananassa HOM05D005354 ORTHO05D006315 5.2e-178 628.2 493 64.1
PGR042G1820 Punica granatum HOM05D005354 ORTHO05D006315 1.5e-177 626.7 496 64.5
FAN18G2353 Fragaria x ananassa HOM05D005354 ORTHO05D006315 3.3e-177 625.5 494 64.0
ATR0317G109 Amborella trichopoda HOM05D005354 ORTHO05D006315 7.5e-177 624.4 494 63.8
PSO170G3683 Papaver somniferum HOM05D005354 ORTHO05D006315 3.7e-176 622.1 493 63.3
CDE04G0953 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 1.4e-175 620.2 493 61.5
Migut.E00837 Erythranthe guttata HOM05D005354 ORTHO05D006315 2.4e-175 619.4 495 62.0
Dinv21636 Davidia involucrata HOM05D005354 ORTHO05D006315 5.3e-175 618.2 493 64.9
Lj2A217G28 Lonicera japonica HOM05D005354 ORTHO05D006315 3.5e-174 615.5 493 63.5
Zm00001eb043970 Zea mays HOM05D005354 ORTHO05D006315 1.3e-173 613.6 493 62.5
HanXRQChr03g0088591 Helianthus annuus HOM05D005354 ORTHO05D006315 1.7e-173 613.2 495 62.2
Dinv39144 Davidia involucrata HOM05D005354 ORTHO05D006315 6.5e-173 611.3 491 63.5
Gohir.D03G162600 Gossypium hirsutum HOM05D005354 ORTHO05D006315 6.5e-173 611.3 493 62.1
Peaxi162Scf00174g00027 Petunia axillaris HOM05D005354 ORTHO05D006315 8.5e-173 610.9 530 60.2
Gohir.A03G008300 Gossypium hirsutum HOM05D005354 ORTHO05D006315 1.1e-172 610.5 493 61.9
Lsat_1_v5_gn_6_91180 Lactuca sativa HOM05D005354 ORTHO05D006315 5.5e-172 608.2 495 61.0
THA.LOC104815494 Tarenaya hassleriana HOM05D005354 ORTHO05D006315 5.5e-172 608.2 493 61.9
Os10g0507800 Oryza sativa ssp. japonica HOM05D005354 ORTHO05D006315 1.8e-170 603.2 493 61.5
Gorai.003G171200 Gossypium raimondii HOM05D005354 ORTHO05D006315 4.0e-170 602.1 503 60.6
HPP92_015115 Vanilla planifolia HOM05D005354 ORTHO05D006315 4.8e-168 595.1 493 61.7
Sp4g17990 Schrenkiella parvula HOM05D005354 ORTHO05D006315 3.1e-167 592.4 487 60.4
Thhalv10016484m.g Eutrema salsugineum HOM05D005354 ORTHO05D006315 4.1e-167 592.0 487 60.6
Aa31LG9G12210 Aethionema arabicum HOM05D000808 ORTHO05D006315 7.0e-167 591.3 487 60.0
BraA04t18215Z Brassica rapa HOM05D005354 ORTHO05D006315 2.0e-166 589.7 493 59.2
Carub.0004s1745 Capsella rubella HOM05D005354 ORTHO05D006315 3.5e-166 589.0 487 61.0
A04p27170 Brassica napus HOM05D005354 ORTHO05D006315 5.9e-166 588.2 487 59.5
AT2G35720 Arabidopsis thaliana HOM05D005354 ORTHO05D006315 7.7e-166 587.8 487 60.6
ECA240G4831 Erigeron canadensis HOM05D005354 ORTHO05D006315 7.7e-166 587.8 493 59.2
CARHR129960 Cardamine hirsuta HOM05D005354 ORTHO05D006315 1.3e-165 587.0 487 60.0
BcaB06g28865 Brassica carinata HOM05D005354 ORTHO05D006315 1.7e-165 586.6 487 59.5
DCAR_027776 Daucus carota HOM05D005354 ORTHO05D006315 2.3e-165 586.3 491 60.7
Hund14561 Selenicereus undatus HOM05D005354 ORTHO05D006315 2.3e-165 586.3 493 61.3
BcaC02g07676 Brassica carinata HOM05D005354 ORTHO05D006315 5.0e-165 585.1 487 59.3
C04p64680 Brassica napus HOM05D005354 ORTHO05D006315 5.0e-165 585.1 487 59.3
BolC4t27945H Brassica oleracea HOM05D005354 ORTHO05D006315 5.0e-165 585.1 487 59.3
AL4G31810 Arabidopsis lyrata HOM05D005354 ORTHO05D006315 6.6e-165 584.7 488 60.2
Prupe.5G069100 Prunus persica HOM05D005354 ORTHO05D006315 2.5e-156 556.2 502 59.8
SHI35069 Sapria himalayana HOM05D005354 ORTHO05D006315 3.4e-153 545.8 496 57.1
Duzib084G0473 Durio zibethinus HOM05D005354 ORTHO05D006315 4.9e-144 515.4 493 54.4
Ca_24575_v3 Cicer arietinum L. HOM05D005354 ORTHO05D006315 1.5e-140 503.8 449 62.8
Actinidia05204 Actinidia chinensis HOM05D005354 ORTHO05D006315 6.8e-138 495.0 399 63.4
Pp3c26_4130 Physcomitrium patens HOM05D005354 ORTHO05D006315 7.5e-137 491.5 501 50.3
Mapoly0099s0041 Marchantia polymorpha HOM05D005354 ORTHO05D006315 1.4e-135 487.3 499 50.3
Zm00001eb442210 Zea mays HOM05D005354 ORTHO05D006315 9.2e-127 458.0 357 63.3
SMO172G0088 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 2.5e-124 449.9 495 47.7
Pp3c3_14420 Physcomitrium patens HOM05D005354 ORTHO05D006315 1.2e-121 441.0 501 46.3
AUR62007515 Chenopodium quinoa HOM05D005354 ORTHO05D006315 1.1e-119 434.5 867 35.8
AUR62042791 Chenopodium quinoa HOM05D005354 ORTHO05D006315 9.6e-108 394.8 287 66.9
AUR62044247 Chenopodium quinoa HOM05D005354 ORTHO05D006315 4.8e-107 392.5 287 66.6
Migut.E01656 Erythranthe guttata HOM05D005354 ORTHO05D006315 2.1e-99 367.1 287 62.4
PGSC0003DMG400004811 Solanum tuberosum HOM05D005354 ORTHO05D006315 7.1e-95 352.1 265 65.3
SMO172G0123 Selaginella moellendorffii HOM05D005354 ORTHO05D006315 5.1e-77 292.7 455 37.1
HPP92_015107 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.3e-72 278.1 221 63.3
CBR_g27963 Chara braunii HOM05D005354 ORTHO05D006315 1.6e-65 254.6 474 33.8
HPP92_015106 Vanilla planifolia HOM05D005354 ORTHO05D006315 7.7e-65 252.3 213 61.5
HPP92_015035 Vanilla planifolia HOM05D005354 ORTHO05D006315 1.7e-64 251.1 376 44.7
Cpa.g.sc29.153 Carica papaya HOM05D005354 ORTHO05D006315 4.4e-60 236.5 188 64.9
unitig_8.g3913 Utricularia gibba HOM05D005354 ORTHO05D006315 3.5e-49 200.3 213 49.8
unitig_8.g3912 Utricularia gibba HOM05D005354 ORTHO05D006315 1.3e-48 198.4 171 62.6
MCO16G272 Micromonas commoda HOM05D005354 ORTHO05D006315 3.3e-47 193.7 507 29.2
CDE12G0732 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 1.6e-41 174.9 216 46.3
Pp3c26_4030 Physcomitrium patens HOM05D005354 ORTHO05D006315 1.0e-40 172.2 200 44.0
AUR62042790 Chenopodium quinoa HOM05D005354 ORTHO05D006315 5.2e-37 159.8 140 59.3
Cre06.g308150 Chlamydomonas reinhardtii HOM05D005354 ORTHO05D006315 1.0e-32 145.6 427 27.4
CDE12G0753 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 4.7e-30 136.7 105 63.8
CDE12G0157 Ceratophyllum demersum HOM05D005354 ORTHO05D006315 5.8e-28 129.8 96 60.4
Zm00001eb442460 Zea mays HOM05D005354 ORTHO05D006315 4.1e-26 123.6 152 48.0
Zm00001eb442450 Zea mays HOM05D005354 ORTHO05D006315 6.6e-24 116.3 84 63.1
AUR62044248 Chenopodium quinoa HOM05D005354 ORTHO05D006315 9.5e-23 112.5 98 63.3
PRCOL_00004836 Prasinoderma coloniale HOM05D005354 ORTHO05D006315 2.1e-22 111.3 585 24.8
BcaB08g34772 Brassica carinata HOM05D001035 ORTHO05D006315 4.7e-22 110.2 108 54.6
HanXRQChr11g0324981 Helianthus annuus HOM05D005354 ORTHO05D006315 6.2e-22 109.8 95 62.1
HPP92_015036 Vanilla planifolia HOM05D005354 ORTHO05D006315 2.3e-21 107.8 79 64.6
Lsat_1_v5_gn_5_20860 Lactuca sativa HOM05D005354 ORTHO05D006315 2.0e-20 104.8 88 56.8
HanXRQChr17g0553071 Helianthus annuus HOM05D005354 ORTHO05D006315 4.6e-17 93.6 91 58.2
Cc08_g12460 Coffea canephora HOM05D005354 ORTHO05D006315 3.0e-16 90.9 57 64.9
SEGI_16043 Sequoiadendron giganteum HOM05D005354 ORTHO05D006315 3.2e-10 70.9 57 54.4
Hma1.2p1_0299F.1_g117910 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 5.6e-07 60.1 48 56.2
A06p27370 Brassica napus HOM05D000175 ORTHO05D000481 7.3e-07 59.7 38 65.8
BraA06t25673Z Brassica rapa HOM05D000175 ORTHO05D000481 7.3e-07 59.7 38 65.8
Sc04g0008520 Simmondsia chinensis HOM05D000175 ORTHO05D000481 7.3e-07 59.7 38 63.2
AL5G27250 Arabidopsis lyrata HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
AT3G47940 Arabidopsis thaliana HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
BcaB01g00860 Brassica carinata HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
BcaB05g23092 Brassica carinata HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
BcaC01g01765 Brassica carinata HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
A06p19730 Brassica napus HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
C03p72150 Brassica napus HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
BolC1t03186H Brassica oleracea HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
BolC1t03188H Brassica oleracea HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
BolC3t19511H Brassica oleracea HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
BraA06t25052Z Brassica rapa HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
Carub.0005s1406 Capsella rubella HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
Thhalv10010490m.g Eutrema salsugineum HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
Sp5g14020 Schrenkiella parvula HOM05D000175 ORTHO05D000481 9.6e-07 59.3 38 65.8
A01p25740 Brassica napus HOM05D000175 ORTHO05D000481 1.6e-06 58.5 38 65.8
BraA01t02490Z Brassica rapa HOM05D000175 ORTHO05D000481 1.6e-06 58.5 38 65.8
Hma1.2p1_1045F.1_g251380 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 2.1e-06 58.2 39 64.1
CARHR156660 Cardamine hirsuta HOM05D000175 ORTHO05D000481 2.8e-06 57.8 38 65.8
MSTRG.7835 Avicennia marina HOM05D000175 ORTHO05D000481 4.8e-06 57.0 40 62.5
BcaC01g02296 Brassica carinata HOM05D000175 ORTHO05D000481 4.8e-06 57.0 38 63.2
BcaC09g49830 Brassica carinata HOM05D000175 ORTHO05D000481 4.8e-06 57.0 38 63.2
C01p32510 Brassica napus HOM05D000175 ORTHO05D000481 4.8e-06 57.0 38 63.2
C03p66910 Brassica napus HOM05D000175 ORTHO05D000481 4.8e-06 57.0 38 63.2
BolC3t18963H Brassica oleracea HOM05D000175 ORTHO05D000481 4.8e-06 57.0 38 63.2
Aa31LG4G16580 Aethionema arabicum HOM05D000175 ORTHO05D000481 6.2e-06 56.6 38 60.5
MSTRG.23059 Avicennia marina HOM05D000175 ORTHO05D000481 6.2e-06 56.6 38 63.2
MSTRG.2365 Avicennia marina HOM05D000175 ORTHO05D000481 6.2e-06 56.6 36 66.7
Cre01.g019950 Chlamydomonas reinhardtii HOM05D000175 ORTHO05D000481 6.2e-06 56.6 36 66.7
TAR629G2106 Trochodendron aralioides HOM05D000175 ORTHO05D000481 6.2e-06 56.6 39 64.1
SGA_v2.0_scaffold25G10888 Striga asiatica HOM05D000175 ORTHO05D000481 8.1e-06 56.2 38 63.2


User provided reference genes

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