Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25869 Trifolium pratense HOM05D014010 ORTHO05D010367 0.0e+00 1684.5 820 100.0
Medtr1g069195 Medicago truncatula HOM05D014010 ORTHO05D010367 0.0e+00 1224.9 829 75.9
Psat6g065120 Pisum sativum HOM05D014010 ORTHO05D010367 8.9e-268 927.2 868 59.8
Ca_09627_v3 Cicer arietinum L. HOM05D014010 ORTHO05D010367 1.6e-256 889.8 842 58.7
Lj5g0020428 Lotus japonicus HOM05D014010 ORTHO05D010367 9.8e-198 694.5 837 49.6
Glyma.13G129600 Glycine max HOM05D014010 ORTHO05D010367 3.7e-181 639.4 773 48.3
Phvul.007G155700 Phaseolus vulgaris HOM05D014010 ORTHO05D010367 2.4e-156 557.0 728 47.4
VMungo0720G0709 Vigna mungo HOM05D014010 ORTHO05D010367 9.9e-150 535.0 765 44.2
arahy.Tifrunner.gnm1.ann1.201IN6 Arachis hypogaea HOM05D014010 ORTHO05D010367 6.0e-139 499.2 830 42.0
Lalb_Chr02g0152931 Lupinus albus HOM05D014010 ORTHO05D010367 2.5e-137 493.8 621 49.3
arahy.Tifrunner.gnm1.ann1.S5Q210 Arachis hypogaea HOM05D014010 ORTHO05D010367 3.3e-97 360.5 620 40.0
QL07p009176 Quercus lobata HOM05D009210 ORTHO05D010367 7.1e-23 113.6 241 33.2
QL09p043508 Quercus lobata HOM05D009210 ORTHO05D010367 7.1e-23 113.6 241 33.2
QL09p043802 Quercus lobata HOM05D009210 ORTHO05D010367 2.1e-22 112.1 241 34.0
QL09p043653 Quercus lobata HOM05D009210 ORTHO05D010367 1.0e-21 109.8 233 34.3
Manes.13G042500 Manihot esculenta HOM05D009210 ORTHO05D010367 1.8e-21 109.0 234 37.6
Actinidia30107 Actinidia chinensis HOM05D009210 ORTHO05D010367 1.3e-19 102.8 235 33.6
Gohir.A07G202550 Gossypium hirsutum HOM05D009210 ORTHO05D010367 6.9e-18 97.1 293 30.0
FvH4_2g19950 Fragaria vesca HOM05D016859 ORTHO05D010367 5.8e-17 94.0 295 29.5
Duzib211G0683 Durio zibethinus HOM05D009210 ORTHO05D010367 1.3e-16 92.8 307 28.7
Gohir.D07G208750 Gossypium hirsutum HOM05D009210 ORTHO05D010367 1.3e-16 92.8 695 24.2
Prupe.8G209900 Prunus persica HOM05D016859 ORTHO05D010367 1.7e-16 92.4 171 33.3
FAN24G1655 Fragaria x ananassa HOM05D016859 ORTHO05D010367 4.9e-16 90.9 295 29.8
TWI59G1397 Tripterygium wilfordii HOM05D009210 ORTHO05D010367 5.5e-15 87.4 252 31.3
Cfa002512 Carpinus fangiana HOM05D009210 ORTHO05D010367 7.1e-15 87.0 108 45.4
Lj1A79G19 Lonicera japonica HOM05D009210 ORTHO05D010367 2.7e-14 85.1 270 30.7
RcHm_v2.0_Chr6g0285611 Rosa chinensis HOM05D016859 ORTHO05D010367 2.7e-14 85.1 314 29.0
Gorai.001G235700 Gossypium raimondii HOM05D009210 ORTHO05D010367 7.9e-14 83.6 294 29.6
CiPaw.04G192300 Carya illinoinensis HOM05D009210 ORTHO05D010367 1.0e-13 83.2 201 34.3
FAN15G1208 Fragaria x ananassa HOM05D016859 ORTHO05D010367 3.9e-13 81.3 316 27.5
ClCG09G009440 Citrullus lanatus HOM05D026148 ORTHO05D010367 5.1e-13 80.9 224 33.0
Nn3g19852 Nelumbo nucifera HOM05D009210 ORTHO05D010367 5.1e-13 80.9 302 28.8
Atru.chr5.1921 Acer truncatum HOM05D009210 ORTHO05D010367 1.1e-12 79.7 206 34.0
FAN27G2643 Fragaria x ananassa HOM05D016859 ORTHO05D010367 1.9e-12 79.0 320 27.2
SGA_v2.0_scaffold3G01596 Striga asiatica HOM05D009210 ORTHO05D015998 3.3e-12 78.2 225 29.8
Ciclev10019870m.g Citrus clementina HOM05D009210 ORTHO05D010367 4.3e-12 77.8 156 33.3
CANSAT01G1047 Cannabis sativa HOM05D009210 ORTHO05D010367 1.3e-11 76.3 221 32.1
MELO3C024146.2 Cucumis melo HOM05D026148 ORTHO05D010367 1.6e-11 75.9 216 31.5
Cpa.g.sc8.212 Carica papaya HOM05D009210 ORTHO05D010367 2.1e-11 75.5 222 32.4
CsaV3_7G025420 Cucumis sativus L. HOM05D026148 ORTHO05D010367 2.1e-11 75.5 213 31.9
Oeu052100.2 Olea europaea HOM05D013334 ORTHO05D015998 5.3e-10 70.9 201 32.3
THA.LOC104814711 Tarenaya hassleriana HOM05D012015 ORTHO05D014750 5.3e-10 70.9 304 27.3
HanXRQChr13g0408971 Helianthus annuus HOM05D040207 ORTHO05D010367 1.2e-09 69.7 262 26.3
Thecc.01G245200 Theobroma cacao HOM05D009210 ORTHO05D010367 1.5e-09 69.3 319 25.4
COL.COLO4_08165 Corchorus olitorius HOM05D009210 ORTHO05D010367 4.5e-09 67.8 273 27.5
CARHR110740 Cardamine hirsuta HOM05D012015 ORTHO05D014750 5.8e-09 67.4 315 29.8
Hund18342 Selenicereus undatus HOM05D017699 ORTHO05D019543 1.3e-08 66.2 260 28.5
QL09p043642 Quercus lobata HOM05D009210 ORTHO05D010367 2.2e-08 65.5 220 28.2
Nitab4.5_0002330g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 3.8e-08 64.7 161 34.8
Sed0006753 Sechium edule HOM05D026148 ORTHO05D010367 3.8e-08 64.7 188 28.7
MSTRG.17532 Avicennia marina HOM05D013334 ORTHO05D015998 1.4e-07 62.8 176 34.1
AL3G47840 Arabidopsis lyrata HOM05D012015 ORTHO05D014750 9.3e-07 60.1 281 25.6
Sp3g33480 Schrenkiella parvula HOM05D012015 ORTHO05D014750 1.2e-06 59.7 249 28.9
Nitab4.5_0001557g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 2.7e-06 58.5 160 33.1
PSO764G0241 Papaver somniferum HOM05D024193 ORTHO05D010367 3.5e-06 58.2 247 27.1
AT2G20250 Arabidopsis thaliana HOM05D012015 ORTHO05D014750 4.6e-06 57.8 224 28.1
Carub.0003s3458 Capsella rubella HOM05D012015 ORTHO05D014750 6.1e-06 57.4 235 23.8
CAN.G771.49 Capsicum annuum HOM05D013334 ORTHO05D015998 7.9e-06 57.0 177 31.6


User provided reference genes

Program Settings