Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25812 Trifolium pratense HOM05D002087 ORTHO05D002101 1.4e-33 145.6 70 100.0
TPR.G22147 Trifolium pratense HOM05D002087 ORTHO05D002101 2.3e-15 85.1 57 70.2
TPR.G9639 Trifolium pratense HOM05D002087 ORTHO05D002101 5.2e-15 84.0 50 78.0
TPR.G39792 Trifolium pratense HOM05D002087 ORTHO05D002101 6.7e-15 83.6 50 76.0
Medtr7g108735 Medicago truncatula HOM05D002087 ORTHO05D002101 8.2e-13 76.6 50 70.0
Ca_09179_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 7.0e-12 73.6 38 81.6
Ca_30608_v3 Cicer arietinum L. HOM05D002087 ORTHO05D002101 7.0e-12 73.6 38 81.6
Glyma.03G253200 Glycine max HOM05D002087 ORTHO05D002101 3.5e-11 71.2 38 81.6
Medtr7g108745 Medicago truncatula HOM05D002087 ORTHO05D002101 4.5e-11 70.9 38 81.6
Psat3g021600 Pisum sativum HOM05D002087 ORTHO05D002101 1.0e-10 69.7 45 66.7
arahy.Tifrunner.gnm1.ann1.03QWZ4 Arachis hypogaea HOM05D002087 ORTHO05D002101 2.9e-10 68.2 38 76.3
arahy.Tifrunner.gnm1.ann1.GPZ84J Arachis hypogaea HOM05D002087 ORTHO05D002101 2.9e-10 68.2 38 76.3
Phvul.006G107900 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 2.9e-10 68.2 36 80.6
arahy.Tifrunner.gnm1.ann1.L9V8FT Arachis hypogaea HOM05D002087 ORTHO05D002101 3.8e-10 67.8 67 46.3
Glyma.03G215000 Glycine max HOM05D002087 ORTHO05D002101 6.5e-10 67.0 38 76.3
Glyma.02G017100 Glycine max HOM05D002087 ORTHO05D002101 1.1e-09 66.2 38 73.7
Glyma.10G017600 Glycine max HOM05D002087 ORTHO05D002101 1.1e-09 66.2 38 73.7
Glyma.19G211600 Glycine max HOM05D002087 ORTHO05D002101 1.5e-09 65.9 38 73.7
arahy.Tifrunner.gnm1.ann1.V9JC55 Arachis hypogaea HOM05D002087 ORTHO05D002101 1.9e-09 65.5 34 79.4
TPR.G25814 Trifolium pratense HOM05D002087 ORTHO05D002101 1.9e-09 65.5 32 90.6
arahy.Tifrunner.gnm1.ann1.06AKLM Arachis hypogaea HOM05D002087 ORTHO05D002101 3.2e-09 64.7 67 44.8
Lj1g0012830 Lotus japonicus HOM05D002087 ORTHO05D002101 7.2e-09 63.5 39 76.9
Lalb_Chr02g0146421 Lupinus albus HOM05D002087 ORTHO05D002101 7.2e-09 63.5 37 67.6
VMungo1383G1626 Vigna mungo HOM05D002087 ORTHO05D002101 7.2e-09 63.5 37 73.0
Phvul.001G207900 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 1.6e-08 62.4 37 70.3
Phvul.007G218700 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 2.1e-08 62.0 38 68.4
Lj5g0005721 Lotus japonicus HOM05D002087 ORTHO05D002101 6.1e-08 60.5 33 72.7
VMungo0720G0684 Vigna mungo HOM05D002087 ORTHO05D002101 1.0e-07 59.7 38 63.2
Psat6g164600 Pisum sativum HOM05D002087 ORTHO05D002101 5.2e-07 57.4 34 73.5
COL.COLO4_23330 Corchorus olitorius HOM05D002087 ORTHO05D002101 1.2e-06 56.2 33 66.7
Thecc.01G302000 Theobroma cacao HOM05D002087 ORTHO05D002101 1.5e-06 55.8 34 70.6
Haze_04952 Corylus avellana HOM05D002087 ORTHO05D002101 2.6e-06 55.1 35 71.4
Phvul.001G207800 Phaseolus vulgaris HOM05D002087 ORTHO05D002101 2.6e-06 55.1 34 64.7
TPR.G33959 Trifolium pratense HOM05D002087 ORTHO05D002101 2.6e-06 55.1 34 67.6
Cfa005900 Carpinus fangiana HOM05D002087 ORTHO05D002101 3.3e-06 54.7 35 68.6
Dinv19683 Davidia involucrata HOM05D002087 ORTHO05D002101 3.3e-06 54.7 37 62.2
Medtr1g088230 Medicago truncatula HOM05D002087 ORTHO05D002101 3.3e-06 54.7 37 59.5
Oeu048333.1 Olea europaea HOM05D002087 ORTHO05D002101 3.3e-06 54.7 35 68.6
CiPaw.07G110400 Carya illinoinensis HOM05D002087 ORTHO05D002101 4.4e-06 54.3 35 68.6
Eucgr.H01103 Eucalyptus grandis HOM05D002087 ORTHO05D002101 4.4e-06 54.3 35 68.6
Eucgr.H01104 Eucalyptus grandis HOM05D002087 ORTHO05D002101 4.4e-06 54.3 35 68.6
Nitab4.5_0000116g0500 Nicotiana tabacum HOM05D002087 ORTHO05D002101 4.4e-06 54.3 39 61.5
Oeu011462.1 Olea europaea HOM05D002087 ORTHO05D002101 4.4e-06 54.3 36 66.7
Potri.002G203500 Populus trichocarpa HOM05D002087 ORTHO05D002101 4.4e-06 54.3 34 67.6
Sabra02G0155900 Salix brachista HOM05D002087 ORTHO05D002101 4.4e-06 54.3 34 67.6
Zm00001eb130570 Zea mays HOM05D002087 ORTHO05D002101 4.4e-06 54.3 39 64.1
Duzib133G1126 Durio zibethinus HOM05D002087 ORTHO05D002101 5.7e-06 53.9 34 70.6
Oeu024406.1 Olea europaea HOM05D002087 ORTHO05D002101 5.7e-06 53.9 33 69.7
ClCG09G005640 Citrullus lanatus HOM05D002087 ORTHO05D002101 7.5e-06 53.5 35 68.6
ClCG10G011030 Citrullus lanatus HOM05D002087 ORTHO05D002101 7.5e-06 53.5 37 62.2
CsaV3_7G029330 Cucumis sativus L. HOM05D002087 ORTHO05D002101 7.5e-06 53.5 35 68.6
Eucgr.H01105 Eucalyptus grandis HOM05D002087 ORTHO05D002101 7.5e-06 53.5 35 71.4
Manes.01G220400 Manihot esculenta HOM05D002087 ORTHO05D002101 7.5e-06 53.5 34 67.6
Oeu046672.1 Olea europaea HOM05D002087 ORTHO05D002101 7.5e-06 53.5 35 68.6
Peaxi162Scf00001g00412 Petunia axillaris HOM05D002087 ORTHO05D002101 7.5e-06 53.5 39 61.5
TWI23G0703 Tripterygium wilfordii HOM05D002087 ORTHO05D002101 7.5e-06 53.5 34 67.6
CiPaw.08G094400 Carya illinoinensis HOM05D002087 ORTHO05D002101 9.7e-06 53.1 35 68.6
Lj1A23T85 Lonicera japonica HOM05D002087 ORTHO05D002101 9.7e-06 53.1 37 62.2
Nitab4.5_0007333g0010 Nicotiana tabacum HOM05D002087 ORTHO05D002101 9.7e-06 53.1 36 63.9
Oeu010665.1 Olea europaea HOM05D002087 ORTHO05D002101 9.7e-06 53.1 34 67.6
QL12p028285 Quercus lobata HOM05D002087 ORTHO05D002101 9.7e-06 53.1 35 68.6
TAR362G1222 Trochodendron aralioides HOM05D002087 ORTHO05D002101 9.7e-06 53.1 63 46.0


User provided reference genes

Program Settings