Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25800 Trifolium pratense HOM05D015699 ORTHO05D013665 4.3e-239 830.9 401 100.0
Lj2g0024122 Lotus japonicus HOM05D015699 ORTHO05D013665 5.1e-59 232.6 283 47.0
AL7G46810 Arabidopsis lyrata HOM05D000011 ORTHO05D013665 4.4e-34 149.8 351 29.9
Lj2g0021776 Lotus japonicus HOM05D000451 ORTHO05D013665 2.8e-33 147.1 273 35.2
AL7G46800 Arabidopsis lyrata HOM05D015699 ORTHO05D013665 1.1e-32 145.2 293 32.8
MD10G1009900 Malus domestica HOM05D000176 ORTHO05D000106 2.7e-31 140.6 420 30.5
TWI09G0140 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 1.5e-29 134.8 352 32.4
TPR.G34910 Trifolium pratense HOM05D015947 ORTHO05D013665 1.9e-29 134.4 290 30.0
Thhalv10012247m.g Eutrema salsugineum HOM05D015699 ORTHO05D013665 6.1e-28 129.4 241 35.3
Prupe.8G014000 Prunus persica HOM05D000176 ORTHO05D000106 1.3e-25 121.7 406 29.6
A02p26940 Brassica napus HOM05D001292 ORTHO05D001202 2.4e-24 117.5 261 30.7
BraA02t07708Z Brassica rapa HOM05D015699 ORTHO05D013665 2.4e-24 117.5 261 30.7
TWI63G1793 Tripterygium wilfordii HOM05D000176 ORTHO05D000106 1.9e-21 107.8 231 35.9
Lj2g0018070 Lotus japonicus HOM05D015699 ORTHO05D013665 1.2e-20 105.1 245 31.4
FvH4_4g28291 Fragaria vesca HOM05D000176 ORTHO05D000106 4.7e-20 103.2 349 24.9
Psat4g056600 Pisum sativum HOM05D015947 ORTHO05D013665 1.8e-19 101.3 201 31.3
MD13G1054400 Malus domestica HOM05D000115 ORTHO05D003511 1.4e-16 91.7 304 28.6
Migut.K00126 Erythranthe guttata HOM05D000176 ORTHO05D000106 1.6e-15 88.2 340 26.5
COL.COLO4_29177 Corchorus olitorius HOM05D017396 ORTHO05D025145 2.7e-15 87.4 396 25.3
Oeu063771.2 Olea europaea HOM05D000176 ORTHO05D000106 2.7e-15 87.4 350 25.7
ClCG06G006800 Citrullus lanatus HOM05D000176 ORTHO05D000013 4.6e-15 86.7 346 24.9
Lj4g0006003 Lotus japonicus HOM05D000451 ORTHO05D000351 7.8e-15 85.9 112 41.1
ClCG09G020530 Citrullus lanatus HOM05D000176 ORTHO05D000106 1.3e-14 85.1 341 26.4
Os07g0507600 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 1.7e-14 84.7 338 25.7
Prupe.6G357900 Prunus persica HOM05D011609 ORTHO05D000106 3.0e-14 84.0 317 25.6
Aa31LG11G4340 Aethionema arabicum HOM05D000176 ORTHO05D000106 5.0e-14 83.2 337 25.2
arahy.Tifrunner.gnm1.ann1.1V6YN4 Arachis hypogaea HOM05D000176 ORTHO05D000106 5.0e-14 83.2 291 29.2
Zm00001eb105710 Zea mays HOM05D000176 ORTHO05D000106 8.6e-14 82.4 338 24.6
MSTRG.10797 Avicennia marina HOM05D000176 ORTHO05D000106 1.9e-13 81.3 340 26.2
QL05p010466 Quercus lobata HOM05D000176 ORTHO05D000106 4.3e-13 80.1 339 26.3
Dinv18200 Davidia involucrata HOM05D000176 ORTHO05D000106 5.6e-13 79.7 341 25.5
PSO675G3031 Papaver somniferum HOM05D010975 ORTHO05D000106 7.3e-13 79.3 401 23.2
arahy.Tifrunner.gnm1.ann1.LPR03G Arachis hypogaea HOM05D000176 ORTHO05D000106 9.5e-13 79.0 275 29.8
CSS0028049 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D000106 9.5e-13 79.0 341 25.8
CSS0045164 Camellia sinensis var. sinensis HOM05D000176 ORTHO05D000106 9.5e-13 79.0 341 25.8
CARHR018550 Cardamine hirsuta HOM05D000176 ORTHO05D000106 9.5e-13 79.0 289 25.3
Prupe.3G047800 Prunus persica HOM05D000176 ORTHO05D000106 9.5e-13 79.0 348 24.4
GSVIVG01017117001 Vitis vinifera HOM05D000176 ORTHO05D003511 9.5e-13 79.0 358 24.6
FAN07G1950 Fragaria x ananassa HOM05D011609 ORTHO05D000106 1.2e-12 78.6 349 24.4
GSVIVG01006780001 Vitis vinifera HOM05D000176 ORTHO05D000106 1.2e-12 78.6 345 26.1
Actinidia11188 Actinidia chinensis HOM05D000176 ORTHO05D000106 1.6e-12 78.2 340 25.6
Psat5g290160 Pisum sativum HOM05D015947 ORTHO05D018089 1.6e-12 78.2 378 24.9
Cc03_g14530 Coffea canephora HOM05D000176 ORTHO05D000106 3.6e-12 77.0 293 27.3
HanXRQChr09g0246821 Helianthus annuus HOM05D000176 ORTHO05D000106 3.6e-12 77.0 340 25.9
FAN14G4430 Fragaria x ananassa HOM05D011609 ORTHO05D000106 4.7e-12 76.6 370 25.1
Rhsim06G0121800 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.1e-11 75.5 338 25.1
RhsimUnG0046100 Rhododendron simsii HOM05D000176 ORTHO05D000106 1.1e-11 75.5 274 27.4
RcHm_v2.0_Chr2g0143601 Rosa chinensis HOM05D000176 ORTHO05D000106 2.3e-11 74.3 342 23.4
arahy.Tifrunner.gnm1.ann1.DS9IRV Arachis hypogaea HOM05D000176 ORTHO05D000106 6.8e-11 72.8 276 29.0
FvH4_1g02840 Fragaria vesca HOM05D007040 ORTHO05D025561 8.9e-11 72.4 413 24.5
DCAR_011104 Daucus carota HOM05D010975 ORTHO05D010903 1.5e-10 71.6 275 25.8
FAN14G5492 Fragaria x ananassa HOM05D011609 ORTHO05D000106 1.5e-10 71.6 213 29.1
MD09G1191600 Malus domestica HOM05D000176 ORTHO05D000106 2.0e-10 71.2 342 24.3
Thhalv10007522m.g Eutrema salsugineum HOM05D000176 ORTHO05D000106 3.4e-10 70.5 289 23.9
Sabra02G0169600 Salix brachista HOM05D000176 ORTHO05D000106 3.4e-10 70.5 294 25.9
FAN13G3048 Fragaria x ananassa HOM05D011609 ORTHO05D000106 4.4e-10 70.1 332 25.6
Lsat_1_v5_gn_7_67341 Lactuca sativa HOM05D000176 ORTHO05D000106 4.4e-10 70.1 347 25.1
FvH4_6g33711 Fragaria vesca HOM05D000176 ORTHO05D000106 5.8e-10 69.7 342 22.8
FAN13G0242 Fragaria x ananassa HOM05D011609 ORTHO05D000106 5.8e-10 69.7 274 27.0
Lj6g0005713 Lotus japonicus HOM05D000176 ORTHO05D000106 9.8e-10 68.9 296 25.0
Psat4g150000 Pisum sativum HOM05D000451 ORTHO05D013665 9.8e-10 68.9 317 25.9
CsaV3_5G039840 Cucumis sativus L. HOM05D000176 ORTHO05D000106 1.7e-09 68.2 266 26.3
arahy.Tifrunner.gnm1.ann1.B0WW5W Arachis hypogaea HOM05D000176 ORTHO05D000106 2.2e-09 67.8 293 25.3
arahy.Tifrunner.gnm1.ann1.ZG7XLL Arachis hypogaea HOM05D000176 ORTHO05D000106 2.2e-09 67.8 296 25.3
arahy.Tifrunner.gnm1.ann1.ZDIH5U Arachis hypogaea HOM05D000176 ORTHO05D000106 3.7e-09 67.0 221 29.0
arahy.Tifrunner.gnm1.ann1.JC35X6 Arachis hypogaea HOM05D000176 ORTHO05D000106 8.3e-09 65.9 160 31.2
arahy.Tifrunner.gnm1.ann1.2FS4ZQ Arachis hypogaea HOM05D000176 ORTHO05D000106 1.1e-08 65.5 160 30.6
arahy.Tifrunner.gnm1.ann1.015UF7 Arachis hypogaea HOM05D000176 ORTHO05D000106 3.2e-08 63.9 127 35.4
AT2G05350 Arabidopsis thaliana HOM05D029468 ORTHO05D021456 4.1e-08 63.5 94 37.2
TPR.G15371 Trifolium pratense HOM05D000176 ORTHO05D000106 4.1e-08 63.5 162 30.2
A02p26910 Brassica napus HOM05D015699 ORTHO05D013665 5.4e-08 63.2 307 24.1
BraA02t07705Z Brassica rapa HOM05D015699 ORTHO05D013665 5.4e-08 63.2 307 24.1
Sopen10g035120 Solanum pennellii HOM05D000176 ORTHO05D000106 7.0e-08 62.8 208 26.4
arahy.Tifrunner.gnm1.ann1.D2SWBU Arachis hypogaea HOM05D000176 ORTHO05D000106 9.2e-08 62.4 139 33.1
Psat5g147800 Pisum sativum HOM05D015947 ORTHO05D021456 1.2e-07 62.0 88 38.6
Aqoxy2G02523 Aquilegia oxysepala HOM05D000176 ORTHO05D000106 1.6e-07 61.6 288 21.2
Oeu011079.1 Olea europaea HOM05D017117 ORTHO05D025954 2.0e-07 61.2 204 28.4
Psat4g056520 Pisum sativum HOM05D015947 ORTHO05D021456 3.5e-07 60.5 88 38.6
QL01p021011 Quercus lobata HOM05D000176 ORTHO05D000106 3.5e-07 60.5 308 22.7
QL06p039002 Quercus lobata HOM05D000176 ORTHO05D000106 3.5e-07 60.5 308 22.7
arahy.Tifrunner.gnm1.ann1.L0X3BI Arachis hypogaea HOM05D000176 ORTHO05D000106 4.6e-07 60.1 160 30.6
FAN18G3237 Fragaria x ananassa HOM05D011609 ORTHO05D000106 4.6e-07 60.1 255 24.7
Hma1.2p1_0111F.1_g053640 Hydrangea macrophylla HOM05D000176 ORTHO05D000106 4.6e-07 60.1 276 25.0
Nitab4.5_0000381g0110 Nicotiana tabacum HOM05D000176 ORTHO05D000106 4.6e-07 60.1 278 23.0
arahy.Tifrunner.gnm1.ann1.PJM93A Arachis hypogaea HOM05D000176 ORTHO05D000106 6.0e-07 59.7 132 33.3
QL02p087672 Quercus lobata HOM05D000176 ORTHO05D000106 6.0e-07 59.7 308 22.7
Solyc10g085700.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 6.0e-07 59.7 191 26.7
Peaxi162Scf00146g01211 Petunia axillaris HOM05D000176 ORTHO05D000106 1.3e-06 58.5 277 22.0
QL03p027529 Quercus lobata HOM05D000176 ORTHO05D000106 5.0e-06 56.6 263 24.0
QL04p049060 Quercus lobata HOM05D000176 ORTHO05D000106 5.0e-06 56.6 263 24.0
QL11p033759 Quercus lobata HOM05D000176 ORTHO05D000106 5.0e-06 56.6 263 24.0
Os07g0507500 Oryza sativa ssp. japonica HOM05D000176 ORTHO05D000106 6.6e-06 56.2 297 23.2
QL04p091180 Quercus lobata HOM05D000176 ORTHO05D000106 6.6e-06 56.2 273 23.8
QL08p043533 Quercus lobata HOM05D000176 ORTHO05D000106 6.6e-06 56.2 273 23.8


User provided reference genes

Program Settings