Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 7.0e-46 186.8 87 100.0
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 1.6e-26 122.5 85 76.5
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 6.0e-21 104.0 129 49.6
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 6.0e-21 104.0 129 49.6
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.3e-20 102.8 129 48.1
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 1.7e-20 102.4 129 47.3
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 3.9e-20 101.3 129 46.5
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 1.5e-19 99.4 117 51.3
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 2.1e-18 95.5 129 44.2
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-17 92.8 60 73.3
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 2.4e-17 92.0 129 45.0
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 8.9e-17 90.1 129 41.1
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 2.2e-15 85.5 57 70.2
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 3.8e-15 84.7 57 64.9
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 6.4e-15 84.0 129 41.1
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 8.4e-15 83.6 59 66.1
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 8.4e-15 83.6 59 66.1
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 2.4e-14 82.0 115 40.0
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 9.2e-14 80.1 115 38.3
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 1.7e-12 75.9 129 36.4
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 3.9e-12 74.7 129 36.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.9e-12 74.7 115 37.4
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 8.7e-12 73.6 131 34.4
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 1.9e-11 72.4 129 34.9
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 2.5e-11 72.0 129 36.4
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 5.6e-11 70.9 58 51.7
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 5.6e-11 70.9 58 55.2
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 7.3e-11 70.5 115 37.4
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.6e-10 69.3 129 33.3
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 2.1e-10 68.9 58 50.0
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 2.1e-10 68.9 70 47.1
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.1e-10 68.9 115 36.5
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 2.1e-10 68.9 129 35.7
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 2.8e-10 68.6 57 52.6
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 2.8e-10 68.6 115 36.5
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 3.6e-10 68.2 57 50.9
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 3.6e-10 68.2 57 50.9
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.8e-10 67.8 57 52.6
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.8e-10 67.8 57 52.6
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 4.8e-10 67.8 115 35.7
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 4.8e-10 67.8 117 33.3
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 6.2e-10 67.4 115 33.9
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 6.2e-10 67.4 60 50.0
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 6.2e-10 67.4 129 34.1
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.1e-09 66.6 115 35.7
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 1.1e-09 66.6 129 31.0
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.1e-09 66.6 68 45.6
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.4e-09 66.2 117 34.2
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 1.4e-09 66.2 129 35.7
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.8e-09 65.9 60 48.3
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 2.4e-09 65.5 129 34.1
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 2.4e-09 65.5 58 48.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 2.4e-09 65.5 129 34.1
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 3.1e-09 65.1 58 44.8
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 4.0e-09 64.7 114 34.2
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 6.9e-09 63.9 115 33.9
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 6.9e-09 63.9 115 33.9
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 9.0e-09 63.5 115 33.9
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 9.0e-09 63.5 115 33.9
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 9.0e-09 63.5 129 34.9
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 9.0e-09 63.5 115 32.2
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.2e-08 63.2 129 31.0
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 1.2e-08 63.2 68 47.1
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.5e-08 62.8 130 33.1
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 2.6e-08 62.0 115 35.7
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 3.4e-08 61.6 68 44.1
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.4e-08 61.6 129 30.2
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.4e-08 61.6 129 30.2
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 4.4e-08 61.2 58 43.1
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.8e-08 60.8 129 30.2
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 9.9e-08 60.1 58 43.1
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.3e-07 59.7 129 31.0
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 1.7e-07 59.3 57 43.9
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 1.7e-07 59.3 115 33.9
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 3.8e-07 58.2 57 47.4
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 4.9e-07 57.8 115 30.4
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 6.4e-07 57.4 58 46.6
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 6.4e-07 57.4 115 33.0
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 5.4e-06 54.3 58 41.4
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 9.3e-06 53.5 71 45.1
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 9.3e-06 53.5 68 39.7


User provided reference genes

Program Settings