Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25699 Trifolium pratense HOM05D006802 ORTHO05D008507 2.1e-225 785.4 414 100.0
Medtr1g071470 Medicago truncatula HOM05D006802 ORTHO05D008507 1.9e-189 666.0 416 86.1
Ca_09735_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 9.1e-168 594.0 415 79.3
Glyma.02G144900 Glycine max HOM05D006802 ORTHO05D008507 2.4e-152 542.7 423 72.1
VMungo0720G2797 Vigna mungo HOM05D006802 ORTHO05D008507 4.5e-151 538.5 420 70.7
Phvul.007G174300 Phaseolus vulgaris HOM05D006802 ORTHO05D008507 1.0e-150 537.3 423 70.4
Lj5g0013924 Lotus japonicus HOM05D006802 ORTHO05D008507 4.5e-143 511.9 415 70.6
Psat6g059280 Pisum sativum HOM05D006802 ORTHO05D008507 4.5e-135 485.3 338 79.6
Lalb_Chr02g0142571 Lupinus albus HOM05D006802 ORTHO05D008507 8.9e-131 471.1 455 58.7
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 4.3e-117 425.6 473 53.5
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 1.8e-115 420.2 450 54.2
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 4.0e-115 419.1 472 52.8
QL12p020415 Quercus lobata HOM05D006802 ORTHO05D008507 2.0e-114 416.8 460 53.5
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 1.1e-112 411.0 448 52.5
Duzib133G0133 Durio zibethinus HOM05D006802 ORTHO05D008507 1.9e-112 410.2 450 52.9
MD03G1259400 Malus domestica HOM05D006802 ORTHO05D008507 1.9e-112 410.2 432 53.9
Atru.chr5.1503 Acer truncatum HOM05D006802 ORTHO05D008507 3.2e-112 409.5 478 51.3
Ciclev10023787m.g Citrus clementina HOM05D006802 ORTHO05D008507 7.1e-112 408.3 445 56.0
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 5.1e-110 402.1 447 52.8
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 1.5e-109 400.6 462 50.2
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 1.5e-109 400.6 442 53.8
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 7.3e-109 398.3 461 51.6
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 2.8e-108 396.4 460 51.5
CsaV3_7G027850 Cucumis sativus L. HOM05D006802 ORTHO05D008507 8.1e-108 394.8 454 54.6
arahy.Tifrunner.gnm1.ann1.BH5QN1 Arachis hypogaea HOM05D006802 ORTHO05D008507 1.1e-107 394.4 380 62.6
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 1.8e-107 393.7 443 52.6
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 1.2e-106 391.0 447 52.8
Manes.01G204700 Manihot esculenta HOM05D006802 ORTHO05D008507 2.6e-106 389.8 476 51.1
COL.COLO4_09049 Corchorus olitorius HOM05D006802 ORTHO05D008507 7.6e-106 388.3 450 52.0
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 1.3e-105 387.5 429 53.1
TWI75G0310 Tripterygium wilfordii HOM05D006802 ORTHO05D008507 2.9e-105 386.3 457 53.8
FAN24G3569 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.8e-105 386.0 426 55.2
Sed0009701 Sechium edule HOM05D006802 ORTHO05D008507 4.9e-105 385.6 457 50.8
CANSAT25G2646 Cannabis sativa HOM05D006802 ORTHO05D008507 6.4e-105 385.2 435 52.4
MELO3C015801.2 Cucumis melo HOM05D006802 ORTHO05D008507 8.4e-105 384.8 457 53.6
FAN15G2517 Fragaria x ananassa HOM05D006802 ORTHO05D008507 8.4e-105 384.8 426 52.6
FAN15G2655 Fragaria x ananassa HOM05D006802 ORTHO05D008507 8.4e-105 384.8 426 52.6
FAN20G1382 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.9e-104 383.6 426 53.5
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 7.1e-104 381.7 467 49.5
FvH4_2g23081 Fragaria vesca HOM05D006802 ORTHO05D008507 9.2e-104 381.3 426 54.9
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 1.2e-103 380.9 482 50.2
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 3.5e-103 379.4 422 51.2
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 1.7e-102 377.1 470 48.7
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 6.6e-102 375.2 441 49.9
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 6.6e-102 375.2 454 48.9
FAN27G2418 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.5e-101 374.0 426 53.1
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 1.9e-101 373.6 443 50.1
AUR62032294 Chenopodium quinoa HOM05D006802 ORTHO05D008507 1.6e-100 370.5 466 50.6
Ah.11g050290 Amaranthus hybridus HOM05D006802 ORTHO05D008507 3.6e-100 369.4 467 47.3
Oeu023625.1 Olea europaea HOM05D006802 ORTHO05D008507 4.7e-100 369.0 432 50.2
Sc05g0001260 Simmondsia chinensis HOM05D006802 ORTHO05D008507 6.2e-100 368.6 468 51.1
AUR62011982 Chenopodium quinoa HOM05D006802 ORTHO05D008507 8.1e-100 368.2 467 50.5
AL5G46150 Arabidopsis lyrata HOM05D006802 ORTHO05D008507 1.1e-99 367.9 442 48.6
Aa31LG10G17140 Aethionema arabicum HOM05D000738 ORTHO05D000675 1.4e-99 367.5 458 51.1
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 1.4e-99 367.5 426 48.6
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 1.8e-99 367.1 448 50.2
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 1.8e-99 367.1 442 50.2
EL10Ac5g10508 Beta vulgaris HOM05D006802 ORTHO05D008507 4.4e-98 362.5 468 46.8
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 9.9e-98 361.3 440 50.5
Lj1A51G14 Lonicera japonica HOM05D006802 ORTHO05D008507 1.3e-97 360.9 460 47.6
PSO170G3117 Papaver somniferum HOM05D006802 ORTHO05D008507 2.2e-97 360.1 467 45.8
Hund02858 Selenicereus undatus HOM05D006802 ORTHO05D008507 4.9e-97 359.0 433 49.9
SalBow4G3164 Salvia bowleyana HOM05D006802 ORTHO05D008507 1.4e-96 357.5 438 49.5
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 1.9e-96 357.1 438 48.4
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 1.6e-95 354.0 454 48.0
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 1.6e-95 354.0 426 49.1
CARHR291660 Cardamine hirsuta HOM05D006802 ORTHO05D008507 4.6e-95 352.4 440 50.9
Migut.D00338 Erythranthe guttata HOM05D006802 ORTHO05D008507 2.5e-93 346.7 430 52.1
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 4.3e-93 345.9 436 47.5
arahy.Tifrunner.gnm1.ann1.M4INHU Arachis hypogaea HOM05D006802 ORTHO05D008507 9.6e-93 344.7 381 55.6
SGA_v2.0_scaffold138G35303 Striga asiatica HOM05D006802 ORTHO05D008507 3.6e-92 342.8 419 50.8
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 3.1e-91 339.7 415 46.5
Gohir.A12G003100 Gossypium hirsutum HOM05D006802 ORTHO05D008507 3.1e-91 339.7 450 46.9
Carub.0005s2995 Capsella rubella HOM05D006802 ORTHO05D008507 4.0e-91 339.3 404 49.8
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 2.0e-90 337.0 428 46.0
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 2.6e-90 336.7 428 46.0
unitig_8.g3726 Utricularia gibba HOM05D006802 ORTHO05D008507 2.9e-89 333.2 435 46.9
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 2.4e-88 330.1 428 45.3
ATR0665G117 Amborella trichopoda HOM05D006802 ORTHO05D008507 1.4e-83 314.3 470 44.9
FAN27G1711 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.4e-82 309.7 344 54.4
SalBow4G0867 Salvia bowleyana HOM05D006802 ORTHO05D008507 4.9e-81 305.8 429 45.2
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 4.2e-80 302.8 433 44.8
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 1.2e-79 301.2 434 44.5
PGR044G0137 Punica granatum HOM05D006802 ORTHO05D008507 1.5e-77 294.3 464 42.0
PGR047G0003 Punica granatum HOM05D006802 ORTHO05D008507 1.5e-77 294.3 464 42.0
Zm00001eb202090 Zea mays HOM05D006802 ORTHO05D008507 1.8e-75 287.3 475 38.9
Actinidia21140 Actinidia chinensis HOM05D006802 ORTHO05D008507 2.4e-75 287.0 415 44.8
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 5.3e-75 285.8 436 43.3
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 1.5e-74 284.3 435 42.1
Os10g0208500 Oryza sativa ssp. japonica HOM05D006802 ORTHO05D008507 7.6e-74 282.0 473 41.9
MBI11_g04239_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 1.2e-71 274.6 407 42.3
CiPaw.07G088100 Carya illinoinensis HOM05D006802 ORTHO05D008507 1.8e-70 270.8 453 41.9
AT3G63290 Arabidopsis thaliana HOM05D006802 ORTHO05D008507 6.7e-70 268.9 338 46.4
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 1.1e-69 268.1 278 52.9
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 9.6e-69 265.0 341 46.6
Gohir.D12G002800 Gossypium hirsutum HOM05D006802 ORTHO05D008507 1.3e-62 244.6 307 47.6
Glyma.10G029100 Glycine max HOM05D006802 ORTHO05D008507 1.5e-61 241.1 229 66.4
BcaB02g08069 Brassica carinata HOM05D006802 ORTHO05D008507 5.3e-59 232.6 316 44.3
Mapoly0127s0046 Marchantia polymorpha HOM05D006802 ORTHO05D008507 5.9e-58 229.2 460 35.7
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 1.1e-56 224.9 421 33.7
Hma1.2p1_1924F.1_g307700 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 4.2e-56 223.0 222 55.0
Pp3c22_5720 Physcomitrium patens HOM05D006802 ORTHO05D008507 3.6e-55 219.9 462 34.0
SMO358G0716 Selaginella moellendorffii HOM05D006802 ORTHO05D008507 1.0e-54 218.4 391 38.6
MBI11_g35086_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 2.7e-47 193.7 201 53.7
GSVIVG01001200001 Vitis vinifera HOM05D006802 ORTHO05D008507 1.3e-41 174.9 233 47.2
MD11G1280000 Malus domestica HOM05D006802 ORTHO05D008507 1.5e-40 171.4 138 63.8
GSVIVG01001201001 Vitis vinifera HOM05D006802 ORTHO05D008507 1.6e-39 167.9 131 68.7
Dinv32894 Davidia involucrata HOM05D000738 ORTHO05D000675 1.0e-38 165.2 249 43.0
Pp3c22_5780 Physcomitrium patens HOM05D006802 ORTHO05D008507 8.2e-36 155.6 322 33.5
SEGI_17080 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 1.6e-31 141.4 372 32.0
SEGI_40565 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 1.6e-31 141.4 372 32.0
MBI11_g35085_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 2.2e-20 104.4 168 37.5
Actinidia24920 Actinidia chinensis HOM05D000738 ORTHO05D011926 7.3e-16 89.4 62 67.7
Carub.0007s2916 Capsella rubella HOM05D005850 ORTHO05D007405 1.1e-11 75.5 343 27.1
Thhalv10025099m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 9.2e-11 72.4 342 26.3
BraA04t16569Z Brassica rapa HOM05D005850 ORTHO05D007405 1.6e-10 71.6 342 27.5
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 3.5e-10 70.5 354 25.7
CSS0027687 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 3.5e-10 70.5 352 23.6
Potri.018G076700 Populus trichocarpa HOM05D005850 ORTHO05D007405 5.9e-10 69.7 349 24.6
RcHm_v2.0_Chr2g0091051 Rosa chinensis HOM05D005850 ORTHO05D007405 7.8e-10 69.3 361 25.2
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 1.0e-09 68.9 338 24.6
Thhalv10025558m.g Eutrema salsugineum HOM05D005850 ORTHO05D007405 1.3e-09 68.6 331 24.8
C04p42500 Brassica napus HOM05D005850 ORTHO05D007405 3.9e-09 67.0 337 27.6
PGR102G2365 Punica granatum HOM05D005850 ORTHO05D007405 3.9e-09 67.0 343 24.2
CBR_g56394 Chara braunii HOM05D006802 ORTHO05D008507 5.0e-09 66.6 82 34.1
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 5.0e-09 66.6 353 22.9
BcaB02g08068 Brassica carinata HOM05D006802 ORTHO05D008507 6.6e-09 66.2 52 61.5
Sed0018565 Sechium edule HOM05D005850 ORTHO05D007405 6.6e-09 66.2 344 24.1
THA.LOC104808745 Tarenaya hassleriana HOM05D005850 ORTHO05D007405 6.6e-09 66.2 363 24.5
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 8.6e-09 65.9 359 24.2
SEGI_00902 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 8.6e-09 65.9 74 48.6
SEGI_14182 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 8.6e-09 65.9 74 48.6
PSO063G4477 Papaver somniferum HOM05D005850 ORTHO05D007405 1.5e-08 65.1 337 23.1
Prupe.7G227200 Prunus persica HOM05D005850 ORTHO05D007405 1.5e-08 65.1 352 23.9
Sp7g10960 Schrenkiella parvula HOM05D005850 ORTHO05D007405 1.5e-08 65.1 342 26.0
Atru.chr7.1296 Acer truncatum HOM05D005850 ORTHO05D007405 1.9e-08 64.7 344 25.6
BcaC02g09427 Brassica carinata HOM05D005850 ORTHO05D007405 1.9e-08 64.7 337 27.9
BolC4t25826H Brassica oleracea HOM05D005850 ORTHO05D007405 1.9e-08 64.7 337 27.9
CSS0015458 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 1.9e-08 64.7 352 23.0
A04p08720 Brassica napus HOM05D005850 ORTHO05D007405 2.5e-08 64.3 335 27.8
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 3.3e-08 63.9 359 24.2
BcaB03g16095 Brassica carinata HOM05D005850 ORTHO05D007405 4.3e-08 63.5 363 26.7
FAN28G1812 Fragaria x ananassa HOM05D005850 ORTHO05D007405 4.3e-08 63.5 359 24.0
Nn6g34147 Nelumbo nucifera HOM05D006802 ORTHO05D008507 4.3e-08 63.5 92 42.4
CANSAT56G0565 Cannabis sativa HOM05D005850 ORTHO05D007405 5.6e-08 63.2 335 24.5
Dinv41576 Davidia involucrata HOM05D005850 ORTHO05D007405 5.6e-08 63.2 344 23.5
FvH4_1g05370 Fragaria vesca HOM05D005850 ORTHO05D007405 7.3e-08 62.8 359 24.0
FAN27G1988 Fragaria x ananassa HOM05D006802 ORTHO05D008507 7.3e-08 62.8 40 70.0
Os05g0556000 Oryza sativa ssp. japonica HOM05D005850 ORTHO05D007405 9.5e-08 62.4 360 23.3
ECA234G3981 Erigeron canadensis HOM05D005850 ORTHO05D007405 1.2e-07 62.0 339 23.0
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.6e-07 61.6 352 25.0
Glyma.12G008700 Glycine max HOM05D005850 ORTHO05D007405 1.6e-07 61.6 359 23.4
HPP92_023543 Vanilla planifolia HOM05D006802 ORTHO05D008507 2.1e-07 61.2 90 38.9
Lj3g0026332 Lotus japonicus HOM05D005850 ORTHO05D007405 2.8e-07 60.8 328 24.7
Medtr0314s0030 Medicago truncatula HOM05D005850 ORTHO05D007405 2.8e-07 60.8 329 25.8
Sabra18G0064500 Salix brachista HOM05D005850 ORTHO05D007405 2.8e-07 60.8 335 24.5
MD02G1062200 Malus domestica HOM05D005850 ORTHO05D007405 3.6e-07 60.5 345 23.5
Zm00001eb343200 Zea mays HOM05D005850 ORTHO05D007405 3.6e-07 60.5 342 26.0
CDE05G1612 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 4.7e-07 60.1 52 57.7
Eucgr.C04135 Eucalyptus grandis HOM05D005850 ORTHO05D007405 4.7e-07 60.1 361 22.7
TPR.G30190 Trifolium pratense HOM05D005850 ORTHO05D007405 4.7e-07 60.1 330 23.6
Aa31LG9G4350 Aethionema arabicum HOM05D005850 ORTHO05D007405 8.0e-07 59.3 355 23.4
CsaV3_2G002440 Cucumis sativus L. HOM05D005850 ORTHO05D007405 1.4e-06 58.5 342 24.0
Psat0s3467g0080 Pisum sativum HOM05D005850 ORTHO05D007405 1.4e-06 58.5 328 25.6
Glyma.09G227900 Glycine max HOM05D005850 ORTHO05D007405 1.8e-06 58.2 349 23.8
Lalb_Chr19g0140271 Lupinus albus HOM05D005850 ORTHO05D007405 1.8e-06 58.2 333 22.5
Peaxi162Scf00560g00618 Petunia axillaris HOM05D005850 ORTHO05D007405 1.8e-06 58.2 187 25.7
CSS0006300 Camellia sinensis var. sinensis HOM05D005850 ORTHO05D007405 2.3e-06 57.8 368 22.3
SMO266G0057 Selaginella moellendorffii HOM05D005850 ORTHO05D007405 2.3e-06 57.8 340 21.5
ClCG11G002620 Citrullus lanatus HOM05D005850 ORTHO05D007405 4.0e-06 57.0 138 29.7
EL10Ac8g18542 Beta vulgaris HOM05D005850 ORTHO05D007405 5.2e-06 56.6 320 23.4
Manes.16G069601 Manihot esculenta HOM05D005850 ORTHO05D007405 5.2e-06 56.6 207 28.0
Zm00001eb295310 Zea mays HOM05D005850 ORTHO05D007405 6.8e-06 56.2 184 26.6
Gohir.A06G060700 Gossypium hirsutum HOM05D005850 ORTHO05D007405 8.9e-06 55.8 336 23.8
Hma1.2p1_1968F.1_g309450 Hydrangea macrophylla HOM05D005850 ORTHO05D007405 8.9e-06 55.8 347 23.1


User provided reference genes

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