Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 4.9e-79 297.7 150 100.0
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 3.2e-46 188.7 101 91.1
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 1.2e-45 186.8 101 90.1
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 2.7e-45 185.7 101 88.1
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 1.6e-42 176.4 101 83.2
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 1.1e-41 173.7 106 80.2
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 1.4e-41 173.3 106 79.2
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 1.4e-41 173.3 101 81.2
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 4.0e-41 171.8 101 80.2
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 6.9e-41 171.0 101 83.2
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 2.0e-40 169.5 101 82.2
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 3.4e-40 168.7 101 77.2
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 4.5e-40 168.3 101 77.2
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 9.9e-40 167.2 101 79.2
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 1.3e-39 166.8 101 78.2
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 2.9e-39 165.6 101 76.2
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 2.9e-39 165.6 99 75.8
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 3.8e-39 165.2 100 77.0
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 4.9e-39 164.9 101 78.2
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 6.4e-39 164.5 101 75.2
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 6.4e-39 164.5 101 78.2
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.1e-38 163.7 101 77.2
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 2.4e-38 162.5 101 75.2
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 2.4e-38 162.5 100 77.0
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.2e-38 161.8 101 74.3
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 5.4e-38 161.4 105 71.4
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 5.4e-38 161.4 101 73.3
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 5.4e-38 161.4 97 80.4
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 7.1e-38 161.0 101 74.3
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 2.1e-37 159.5 97 79.4
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 2.7e-37 159.1 101 72.3
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.5e-37 158.7 101 75.2
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.6e-37 158.3 101 75.2
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 4.6e-37 158.3 101 75.2
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 6.0e-37 157.9 99 76.8
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 7.9e-37 157.5 101 74.3
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 1.3e-36 156.8 101 72.3
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 1.3e-36 156.8 99 74.7
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 1.3e-36 156.8 100 76.0
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.8e-36 156.4 98 75.5
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 1.8e-36 156.4 99 74.7
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.8e-36 156.4 101 71.3
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.8e-36 156.4 101 71.3
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 3.0e-36 155.6 99 72.7
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 3.9e-36 155.2 102 74.5
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 5.1e-36 154.8 93 77.4
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 5.1e-36 154.8 101 74.3
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 5.1e-36 154.8 101 74.3
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 5.1e-36 154.8 99 72.7
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 5.1e-36 154.8 101 75.2
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 6.7e-36 154.5 101 74.3
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 6.7e-36 154.5 101 74.3
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 6.7e-36 154.5 99 76.8
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 8.7e-36 154.1 97 75.3
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 8.7e-36 154.1 99 71.7
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 1.9e-35 152.9 101 72.3
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.9e-35 152.9 94 78.7
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 2.5e-35 152.5 99 74.7
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 3.3e-35 152.1 101 71.3
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 4.3e-35 151.8 99 71.7
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 5.6e-35 151.4 101 73.3
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 5.6e-35 151.4 97 77.3
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.6e-35 151.4 99 71.7
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 5.6e-35 151.4 99 72.7
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 7.4e-35 151.0 100 75.0
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 9.6e-35 150.6 99 71.7
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 9.6e-35 150.6 99 71.7
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 1.3e-34 150.2 101 70.3
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 1.6e-34 149.8 97 76.3
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 1.6e-34 149.8 124 61.3
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 2.1e-34 149.4 100 74.0
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 2.1e-34 149.4 100 73.0
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 2.1e-34 149.4 94 76.6
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 2.8e-34 149.1 99 70.7
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.8e-34 149.1 99 70.7
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 3.7e-34 148.7 101 69.3
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 3.7e-34 148.7 101 73.3
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 6.2e-34 147.9 100 71.0
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 8.1e-34 147.5 101 70.3
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 8.1e-34 147.5 99 70.7
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.1e-33 147.1 99 73.7
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 1.4e-33 146.7 97 72.2
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 1.4e-33 146.7 97 75.3
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 1.4e-33 146.7 101 71.3
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 2.4e-33 146.0 97 71.1
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 2.4e-33 146.0 130 60.0
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 2.4e-33 146.0 99 72.7
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 2.4e-33 146.0 99 72.7
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 4.0e-33 145.2 98 74.5
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 5.3e-33 144.8 101 68.3
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 5.3e-33 144.8 99 72.7
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 5.3e-33 144.8 97 73.2
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 6.9e-33 144.4 101 68.3
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 1.2e-32 143.7 99 65.7
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 2.6e-32 142.5 97 67.0
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 3.4e-32 142.1 97 67.0
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 9.9e-32 140.6 97 66.0
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 4.9e-31 138.3 95 70.5
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 4.9e-31 138.3 98 67.3
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.9e-30 136.3 99 66.7
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.9e-30 136.3 99 66.7
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 3.2e-30 135.6 97 67.0
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 2.7e-29 132.5 92 69.6
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 4.6e-29 131.7 100 62.0
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 6.0e-29 131.3 127 55.1
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 2.5e-27 125.9 94 64.9
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 2.5e-27 125.9 100 61.0
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 4.3e-27 125.2 100 60.0
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 1.6e-26 123.2 91 65.9
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 1.6e-26 123.2 102 57.8
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 3.7e-26 122.1 99 58.6
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 8.2e-26 120.9 98 64.3
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 8.2e-26 120.9 78 74.4
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 5.3e-25 118.2 101 62.4
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 3.4e-24 115.5 96 56.2
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 1.0e-23 114.0 77 75.3
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 2.2e-23 112.8 76 71.1
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.4e-22 110.2 70 77.1
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 7.1e-22 107.8 86 64.0
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 9.3e-22 107.5 83 61.4
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.2e-21 107.1 70 75.7
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 1.2e-21 107.1 74 67.6
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.6e-21 106.7 91 53.8
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 1.3e-20 103.6 101 56.4
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 1.6e-18 96.7 79 60.8
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 6.9e-17 91.3 95 52.6
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 6.9e-17 91.3 103 51.5
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 2.2e-15 86.3 58 67.2
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 1.9e-14 83.2 80 57.5
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 3.2e-14 82.4 50 80.0
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 4.3e-11 72.0 84 42.9
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 4.8e-10 68.6 45 75.6
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 1.4e-09 67.0 45 71.1
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.7e-07 60.1 42 61.9


User provided reference genes

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