Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 1.1e-125 453.4 231 100.0
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 2.6e-111 405.6 214 95.3
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 1.1e-109 400.2 214 93.0
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 7.4e-103 377.5 252 79.0
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.7e-99 366.3 213 86.9
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 5.0e-99 364.8 213 85.9
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 1.5e-98 363.2 213 85.4
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.5e-98 363.2 215 84.2
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.9e-98 362.8 213 85.9
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 4.7e-97 358.2 215 80.9
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.0e-96 355.1 213 82.2
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 5.2e-96 354.8 213 84.0
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 6.7e-96 354.4 213 82.6
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 6.7e-96 354.4 213 81.7
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 6.7e-96 354.4 213 81.7
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 8.8e-96 354.0 208 86.1
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 1.5e-95 353.2 214 82.7
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 2.6e-95 352.4 213 82.6
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 3.3e-95 352.1 213 82.6
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 4.4e-95 351.7 213 80.8
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 5.7e-95 351.3 213 81.7
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 9.7e-95 350.5 208 85.1
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 1.3e-94 350.1 213 81.2
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 1.3e-94 350.1 213 81.2
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 1.3e-94 350.1 207 84.5
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.7e-94 349.7 213 81.7
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.7e-94 349.7 212 83.5
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.2e-94 349.4 213 82.2
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 2.2e-94 349.4 213 80.3
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.7e-94 348.6 213 78.9
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 3.7e-94 348.6 215 80.9
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 4.8e-94 348.2 230 77.0
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 8.2e-94 347.4 213 81.2
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.4e-93 346.7 213 79.8
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.4e-93 346.7 216 79.6
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 1.4e-93 346.7 213 81.2
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 2.4e-93 345.9 213 81.2
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 2.4e-93 345.9 213 81.2
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 2.4e-93 345.9 215 79.1
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 3.1e-93 345.5 215 79.5
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 3.1e-93 345.5 213 82.2
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 3.1e-93 345.5 202 85.1
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 5.3e-93 344.7 213 81.7
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 5.3e-93 344.7 211 81.0
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 7.0e-93 344.4 205 83.4
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 7.0e-93 344.4 213 79.8
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 7.0e-93 344.4 215 78.6
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 9.1e-93 344.0 211 81.5
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 9.1e-93 344.0 208 82.2
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.2e-92 343.6 211 81.0
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.6e-92 343.2 213 80.8
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 1.6e-92 343.2 215 80.5
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.6e-92 343.2 216 81.0
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 2.0e-92 342.8 213 80.8
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 2.0e-92 342.8 208 80.8
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.0e-92 342.8 213 80.3
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 2.7e-92 342.4 213 80.3
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 2.7e-92 342.4 213 80.3
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 2.7e-92 342.4 213 80.3
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.7e-92 342.4 213 79.8
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 3.5e-92 342.0 215 79.5
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 3.5e-92 342.0 213 80.3
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.5e-92 341.7 203 83.3
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 4.5e-92 341.7 211 80.6
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 4.5e-92 341.7 210 80.5
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 7.7e-92 340.9 213 79.8
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 7.7e-92 340.9 208 80.3
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.0e-91 340.5 213 79.8
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.3e-91 340.1 208 80.8
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.7e-91 339.7 195 86.7
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 1.7e-91 339.7 203 83.3
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 2.2e-91 339.3 213 78.9
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 2.2e-91 339.3 215 80.0
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 2.2e-91 339.3 212 77.8
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 2.2e-91 339.3 204 81.9
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 2.9e-91 339.0 213 78.9
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 2.9e-91 339.0 213 80.3
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.9e-91 339.0 213 78.4
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.9e-91 339.0 213 78.9
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.9e-91 339.0 215 79.1
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 3.8e-91 338.6 210 79.0
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 3.8e-91 338.6 215 78.6
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 5.0e-91 338.2 213 78.4
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.5e-90 336.7 213 78.4
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 1.9e-90 336.3 214 78.0
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.9e-90 336.3 212 79.2
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 2.5e-90 335.9 213 77.5
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 2.5e-90 335.9 213 77.5
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 4.2e-90 335.1 212 77.4
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 5.5e-90 334.7 213 77.5
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 7.2e-90 334.3 213 76.5
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 7.2e-90 334.3 240 72.5
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 9.4e-90 334.0 213 77.9
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.2e-89 333.6 213 77.5
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 2.1e-89 332.8 213 77.0
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 3.6e-89 332.0 210 77.6
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 3.6e-89 332.0 205 82.9
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 3.6e-89 332.0 215 78.6
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 3.6e-89 332.0 213 76.5
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 6.1e-89 331.3 213 77.0
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 6.1e-89 331.3 213 77.0
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 6.1e-89 331.3 213 77.5
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 8.0e-89 330.9 205 80.0
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 8.0e-89 330.9 207 79.2
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.0e-88 330.5 193 83.9
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.0e-88 328.6 192 84.4
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 5.2e-88 328.2 206 79.1
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 1.2e-87 327.0 219 76.3
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 2.6e-87 325.9 205 78.5
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 1.1e-85 320.5 214 77.1
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 5.9e-84 314.7 198 80.3
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 7.7e-84 314.3 191 80.1
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 2.9e-83 312.4 190 82.6
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 8.6e-83 310.8 213 74.2
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 3.3e-82 308.9 191 78.5
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 4.0e-80 302.0 200 74.5
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 5.7e-79 298.1 191 78.0
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 2.8e-78 295.8 200 73.0
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 8.6e-75 284.3 214 68.2
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 2.1e-73 279.6 200 69.5
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 4.7e-73 278.5 207 71.5
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 4.4e-71 271.9 149 89.9
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.4e-69 266.9 214 64.5
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 8.6e-67 257.7 216 63.0
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 4.7e-65 251.9 208 64.9
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 5.2e-64 248.4 182 68.7
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 3.4e-63 245.7 166 75.3
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 3.4e-63 245.7 157 76.4
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 2.2e-62 243.0 149 79.2
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 1.9e-61 240.0 149 77.9
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 3.2e-61 239.2 201 66.2
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 1.6e-60 236.9 213 62.4
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 7.8e-60 234.6 148 76.4
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 1.0e-59 234.2 179 69.8
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 3.6e-57 225.7 164 71.3
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 1.5e-55 220.3 223 51.6
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 2.8e-49 199.5 131 73.3
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 5.2e-48 195.3 202 50.0
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 5.3e-40 168.7 121 72.7
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 9.3e-37 157.9 114 68.4
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 2.5e-34 149.8 87 80.5
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 2.4e-29 133.3 91 71.4
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.2e-28 131.0 87 73.6
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.9e-26 123.6 135 52.6
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.0e-24 114.8 106 61.3
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.4e-23 112.8 97 60.8
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.2e-20 104.4 63 76.2
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 2.1e-17 93.6 51 90.2
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 3.8e-14 82.8 70 65.7
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.5e-14 82.0 142 38.7
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 9.3e-13 78.2 67 56.7
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 3.3e-10 69.7 114 40.4
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 1.4e-08 64.3 202 27.2
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 7.7e-07 58.5 63 52.4


User provided reference genes

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