Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25667 Trifolium pratense HOM05D006012 ORTHO05D007315 5.7e-147 524.2 269 100.0
Phvul.004G001500 Phaseolus vulgaris HOM05D006012 ORTHO05D007315 1.7e-29 134.0 73 93.2
Lalb_Chr09g0334741 Lupinus albus HOM05D006012 ORTHO05D007315 3.1e-28 129.8 72 91.7
Ca_04122_v3 Cicer arietinum L. HOM05D006012 ORTHO05D007315 4.1e-28 129.4 72 91.7
Psat1g052160 Pisum sativum HOM05D006012 ORTHO05D007315 1.2e-27 127.9 72 90.3
VMungo0464G1120 Vigna mungo HOM05D006012 ORTHO05D007315 1.2e-27 127.9 71 90.1
arahy.Tifrunner.gnm1.ann1.JRBH6H Arachis hypogaea HOM05D006012 ORTHO05D007315 3.5e-27 126.3 74 85.1
Glyma.19G001300 Glycine max HOM05D006012 ORTHO05D007315 4.5e-27 125.9 72 87.5
arahy.Tifrunner.gnm1.ann1.X95WAW Arachis hypogaea HOM05D006012 ORTHO05D007315 6.6e-26 122.1 72 84.7
Medtr6g003970 Medicago truncatula HOM05D006012 ORTHO05D007315 6.6e-26 122.1 72 84.7
Lj2g0010575 Lotus japonicus HOM05D006012 ORTHO05D007315 1.9e-25 120.6 73 83.6
arahy.Tifrunner.gnm1.ann1.IH2J48 Arachis hypogaea HOM05D006012 ORTHO05D007315 3.6e-24 116.3 82 75.6
VMungo0464G2022 Vigna mungo HOM05D006012 ORTHO05D007315 4.7e-24 115.9 70 82.9
Ciclev10020467m.g Citrus clementina HOM05D006012 ORTHO05D007315 1.4e-23 114.4 71 78.9
Potri.014G172300 Populus trichocarpa HOM05D006012 ORTHO05D007315 1.8e-23 114.0 71 80.3
CiPaw.04G044600 Carya illinoinensis HOM05D006012 ORTHO05D007315 2.3e-23 113.6 71 80.3
QL02p049241 Quercus lobata HOM05D006012 ORTHO05D007315 2.3e-23 113.6 71 80.3
QL02p049408 Quercus lobata HOM05D006012 ORTHO05D007315 2.3e-23 113.6 71 80.3
Atru.chr1.951 Acer truncatum HOM05D006012 ORTHO05D007315 3.0e-23 113.2 71 76.1
vmacro09453 Vaccinium macrocarpon HOM05D006012 ORTHO05D007315 5.2e-23 112.5 71 77.5
Dinv26631 Davidia involucrata HOM05D006012 ORTHO05D007315 8.9e-23 111.7 71 77.5
Manes.13G058700 Manihot esculenta HOM05D006012 ORTHO05D007315 8.9e-23 111.7 71 76.1
MD09G1258600 Malus domestica HOM05D006012 ORTHO05D007315 1.2e-22 111.3 71 76.1
Solyc12g011270.2 Solanum lycopersicum HOM05D006012 ORTHO05D007315 1.2e-22 111.3 71 76.1
Sopen12g006600 Solanum pennellii HOM05D006012 ORTHO05D007315 1.2e-22 111.3 71 76.1
Haze_14200 Corylus avellana HOM05D006012 ORTHO05D007315 1.5e-22 110.9 83 72.3
Cc05_g09920 Coffea canephora HOM05D006012 ORTHO05D007315 2.0e-22 110.5 71 74.6
THA.LOC104819018 Tarenaya hassleriana HOM05D006012 ORTHO05D007315 2.0e-22 110.5 71 73.2
A09p28100 Brassica napus HOM05D006012 ORTHO05D007315 2.6e-22 110.2 71 71.8
BraA09t38374Z Brassica rapa HOM05D006012 ORTHO05D007315 2.6e-22 110.2 71 71.8
Sabra14G0131900 Salix brachista HOM05D006012 ORTHO05D007315 2.6e-22 110.2 71 76.1
PGSC0003DMG402007845 Solanum tuberosum HOM05D006012 ORTHO05D007315 2.6e-22 110.2 71 76.1
GSVIVG01015570001 Vitis vinifera HOM05D006012 ORTHO05D007315 2.6e-22 110.2 71 77.5
A03p29140 Brassica napus HOM05D006012 ORTHO05D007315 3.4e-22 109.8 71 70.4
BraA03t12108Z Brassica rapa HOM05D006012 ORTHO05D007315 3.4e-22 109.8 71 70.4
CANSAT80G2879 Cannabis sativa HOM05D006012 ORTHO05D007315 3.4e-22 109.8 71 80.3
Oeu009873.3 Olea europaea HOM05D006012 ORTHO05D007315 3.4e-22 109.8 78 70.5
Peaxi162Scf00000g06018 Petunia axillaris HOM05D006012 ORTHO05D007315 3.4e-22 109.8 71 77.5
Migut.K00294 Erythranthe guttata HOM05D006012 ORTHO05D007315 5.7e-22 109.0 82 63.4
Thhalv10028718m.g Eutrema salsugineum HOM05D006012 ORTHO05D007315 5.7e-22 109.0 71 70.4
BcaB01g02714 Brassica carinata HOM05D006012 ORTHO05D007315 7.5e-22 108.6 71 70.4
Prupe.3G150500 Prunus persica HOM05D006012 ORTHO05D007315 7.5e-22 108.6 71 74.6
RcHm_v2.0_Chr5g0052201 Rosa chinensis HOM05D006012 ORTHO05D007315 7.5e-22 108.6 71 74.6
TWI18G0871 Tripterygium wilfordii HOM05D006012 ORTHO05D007315 7.5e-22 108.6 71 71.8
Zm00001eb160260 Zea mays HOM05D006012 ORTHO05D007315 7.5e-22 108.6 71 74.6
RcHm_v2.0_Chr7g0222291 Rosa chinensis HOM05D006012 ORTHO05D007315 9.8e-22 108.2 71 73.2
CSS0032241 Camellia sinensis var. sinensis HOM05D006012 ORTHO05D007315 1.3e-21 107.8 100 58.0
Carub.0006s2994 Capsella rubella HOM05D006012 ORTHO05D007315 1.3e-21 107.8 71 71.8
CARHR255460 Cardamine hirsuta HOM05D006012 ORTHO05D007315 1.3e-21 107.8 71 71.8
Cpa.g.sc8.4 Carica papaya HOM05D006012 ORTHO05D007315 1.3e-21 107.8 71 74.6
Eucgr.K01363 Eucalyptus grandis HOM05D006012 ORTHO05D007315 1.3e-21 107.8 71 74.6
HPP92_021924 Vanilla planifolia HOM05D006012 ORTHO05D007315 1.3e-21 107.8 72 73.6
AL6G45290 Arabidopsis lyrata HOM05D006012 ORTHO05D007315 1.7e-21 107.5 71 69.0
CSS0007923 Camellia sinensis var. sinensis HOM05D006012 ORTHO05D007315 1.7e-21 107.5 71 73.2
Duzib211G0637 Durio zibethinus HOM05D006012 ORTHO05D007315 1.7e-21 107.5 71 71.8
FAN04G1133 Fragaria x ananassa HOM05D006012 ORTHO05D007315 1.7e-21 107.5 71 73.2
Nitab4.5_0000639g0250 Nicotiana tabacum HOM05D006012 ORTHO05D007315 1.7e-21 107.5 71 73.2
Thecc.01G203100 Theobroma cacao HOM05D006012 ORTHO05D007315 1.7e-21 107.5 100 58.0
Aa31LG5G18160 Aethionema arabicum HOM05D006012 ORTHO05D007315 2.2e-21 107.1 75 66.7
MSTRG.26253 Avicennia marina HOM05D006012 ORTHO05D007315 2.2e-21 107.1 80 65.0
BcaB01g01588 Brassica carinata HOM05D006012 ORTHO05D007315 2.2e-21 107.1 71 69.0
DCAR_021073 Daucus carota HOM05D006012 ORTHO05D007315 2.2e-21 107.1 71 74.6
AT4G11120 Arabidopsis thaliana HOM05D006012 ORTHO05D007315 2.9e-21 106.7 71 69.0
BcaC04g21109 Brassica carinata HOM05D006012 ORTHO05D007315 2.9e-21 106.7 71 69.0
C09p35600 Brassica napus HOM05D006012 ORTHO05D007315 2.9e-21 106.7 71 69.0
HanXRQChr09g0257481 Helianthus annuus HOM05D006012 ORTHO05D007315 2.9e-21 106.7 70 77.1
HanXRQChr13g0397181 Helianthus annuus HOM05D006012 ORTHO05D007315 2.9e-21 106.7 70 77.1
SalBow5G4668 Salvia bowleyana HOM05D006012 ORTHO05D007315 2.9e-21 106.7 82 63.4
SHI10195 Sapria himalayana HOM05D006012 ORTHO05D007315 2.9e-21 106.7 81 70.4
Sed0020192 Sechium edule HOM05D006012 ORTHO05D007315 2.9e-21 106.7 71 71.8
Sc15g0007370 Simmondsia chinensis HOM05D006012 ORTHO05D007315 2.9e-21 106.7 71 76.1
ClCG05G010720 Citrullus lanatus HOM05D006012 ORTHO05D007315 3.7e-21 106.3 71 73.2
CsaV3_3G017730 Cucumis sativus L. HOM05D006012 ORTHO05D007315 3.7e-21 106.3 71 73.2
FvH4_3g28810 Fragaria vesca HOM05D006012 ORTHO05D007315 3.7e-21 106.3 71 71.8
FAN11G1416 Fragaria x ananassa HOM05D006012 ORTHO05D007315 3.7e-21 106.3 71 71.8
FAN16G1998 Fragaria x ananassa HOM05D006012 ORTHO05D007315 3.7e-21 106.3 71 71.8
FAN25G1383 Fragaria x ananassa HOM05D006012 ORTHO05D007315 3.7e-21 106.3 71 71.8
Lsat_1_v5_gn_9_103320 Lactuca sativa HOM05D006012 ORTHO05D007315 3.7e-21 106.3 71 73.2
MBI14_g12732_MAGBIO Magnolia biondii HOM05D006012 ORTHO05D007315 3.7e-21 106.3 71 74.6
Lj8C140T21 Lonicera japonica HOM05D006012 ORTHO05D007315 4.9e-21 105.9 71 71.8
Sp6g06290 Schrenkiella parvula HOM05D006012 ORTHO05D007315 4.9e-21 105.9 71 67.6
EL10Ac1g00408 Beta vulgaris HOM05D006012 ORTHO05D007315 6.4e-21 105.5 71 74.6
TAR629G0946 Trochodendron aralioides HOM05D006012 ORTHO05D007315 6.4e-21 105.5 71 73.2
Ah.11g041370 Amaranthus hybridus HOM05D006012 ORTHO05D007315 8.3e-21 105.1 70 74.3
MELO3C020320.2 Cucumis melo HOM05D006012 ORTHO05D007315 8.3e-21 105.1 71 73.2
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 8.3e-21 105.1 70 71.4
COL.COLO4_24667 Corchorus olitorius HOM05D006012 ORTHO05D007315 1.1e-20 104.8 71 70.4
Nn1g07641 Nelumbo nucifera HOM05D006012 ORTHO05D007315 1.1e-20 104.8 71 71.8
Nitab4.5_0000505g0060 Nicotiana tabacum HOM05D006012 ORTHO05D007315 1.1e-20 104.8 71 70.4
AUR62036845 Chenopodium quinoa HOM05D006012 ORTHO05D007315 1.4e-20 104.4 73 69.9
FAN21G0516 Fragaria x ananassa HOM05D006012 ORTHO05D007315 1.4e-20 104.4 71 69.0
CDE05G0700 Ceratophyllum demersum HOM05D006012 ORTHO05D007315 1.8e-20 104.0 83 63.9
ECA240G1168 Erigeron canadensis HOM05D006012 ORTHO05D007315 1.8e-20 104.0 71 70.4
Glyma.05G001300 Glycine max HOM05D006012 ORTHO05D007315 1.8e-20 104.0 63 84.1
MSTRG.26432 Avicennia marina HOM05D006012 ORTHO05D007315 2.4e-20 103.6 80 62.5
AUR62040810 Chenopodium quinoa HOM05D006012 ORTHO05D007315 3.2e-20 103.2 71 70.4
Sed0024337 Sechium edule HOM05D006012 ORTHO05D007315 3.2e-20 103.2 73 68.5
Gohir.D07G169000 Gossypium hirsutum HOM05D006012 ORTHO05D007315 4.1e-20 102.8 73 67.1
Gorai.N000600 Gossypium raimondii HOM05D006012 ORTHO05D007315 4.1e-20 102.8 73 67.1
Gohir.A07G162400 Gossypium hirsutum HOM05D006012 ORTHO05D007315 5.4e-20 102.4 73 67.1
Oeu006134.1 Olea europaea HOM05D006012 ORTHO05D007315 2.0e-19 100.5 67 71.6
SEGI_03282 Sequoiadendron giganteum HOM05D006012 ORTHO05D007315 4.6e-19 99.4 71 69.0
SEGI_05676 Sequoiadendron giganteum HOM05D006012 ORTHO05D007315 4.6e-19 99.4 71 69.0
ATR0751G237 Amborella trichopoda HOM05D006012 ORTHO05D007315 7.8e-19 98.6 68 70.6
PGR044G1532 Punica granatum HOM05D006012 ORTHO05D007315 7.8e-19 98.6 66 74.2
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 6.6e-18 95.5 84 59.5
Aqoxy6G00639 Aquilegia oxysepala HOM05D006012 ORTHO05D007315 8.6e-18 95.1 71 62.0
arahy.Tifrunner.gnm1.ann1.5R9UV9 Arachis hypogaea HOM05D006012 ORTHO05D003037 1.9e-17 94.0 61 80.3
PSO063G6058 Papaver somniferum HOM05D006012 ORTHO05D007315 3.3e-17 93.2 71 63.4
AagrBONN_evm.TU.Sc2ySwM_369.366 Anthoceros agrestis HOM05D006012 ORTHO05D007315 4.3e-17 92.8 72 61.1
TPR.G20193 Trifolium pratense HOM05D002277 ORTHO05D001770 2.1e-16 90.5 104 57.7
Pp3c10_9620 Physcomitrium patens HOM05D006012 ORTHO05D007315 2.8e-16 90.1 75 61.3
Psat0s207g0360 Pisum sativum HOM05D002277 ORTHO05D001770 2.8e-16 90.1 53 83.0
arahy.Tifrunner.gnm1.ann1.PWN16P Arachis hypogaea HOM05D006012 ORTHO05D007315 8.0e-16 88.6 69 68.1
Pp3c14_4820 Physcomitrium patens HOM05D006012 ORTHO05D007315 1.8e-15 87.4 75 60.0
CBR_g24367 Chara braunii HOM05D006012 ORTHO05D007315 2.3e-15 87.0 71 54.9
Medtr5g083970 Medicago truncatula HOM05D002277 ORTHO05D001770 4.0e-15 86.3 53 79.2
SMO364G0746 Selaginella moellendorffii HOM05D006012 ORTHO05D007315 2.2e-13 80.5 71 50.7
SMO364G0063 Selaginella moellendorffii HOM05D006012 ORTHO05D007315 3.7e-13 79.7 71 50.7
Pp3c1_21680 Physcomitrium patens HOM05D006012 ORTHO05D007315 8.3e-13 78.6 76 50.0
SMO364G0407 Selaginella moellendorffii HOM05D006012 ORTHO05D007315 1.4e-12 77.8 71 50.7
Glyma.14G053500 Glycine max HOM05D002277 ORTHO05D001770 1.6e-11 74.3 54 68.5
Glyma.02G259200 Glycine max HOM05D002277 ORTHO05D001770 7.8e-11 72.0 54 66.7
Lalb_Chr08g0231311 Lupinus albus HOM05D002277 ORTHO05D001770 1.0e-10 71.6 51 64.7
Phvul.008G218400 Phaseolus vulgaris HOM05D002277 ORTHO05D001770 1.0e-10 71.6 47 72.3
Mapoly0072s0022 Marchantia polymorpha HOM05D006012 ORTHO05D007315 3.0e-10 70.1 71 49.3
Lalb_Chr04g0250281 Lupinus albus HOM05D002277 ORTHO05D001770 3.9e-10 69.7 53 60.4
VMungo0647G0912 Vigna mungo HOM05D002277 ORTHO05D001770 1.9e-09 67.4 53 66.0
Cre10.g435500 Chlamydomonas reinhardtii HOM05D006012 ORTHO05D007315 2.8e-08 63.5 72 43.1
arahy.Tifrunner.gnm1.ann1.H4MVMY Arachis hypogaea HOM05D002277 ORTHO05D001770 1.4e-07 61.2 41 70.7
Psat5g132120 Pisum sativum HOM05D002277 ORTHO05D001770 5.2e-07 59.3 56 58.9
PRCOL_00001585 Prasinoderma coloniale HOM05D006012 ORTHO05D007315 5.2e-07 59.3 75 41.3
LjContig00357g0012454 Lotus japonicus HOM05D002277 ORTHO05D001770 8.9e-07 58.5 41 63.4
Medtr3g072360 Medicago truncatula HOM05D002277 ORTHO05D001770 2.6e-06 57.0 57 54.4
VMungo1383G0121 Vigna mungo HOM05D002277 ORTHO05D001770 7.5e-06 55.5 47 59.6
Glyma.18G021200 Glycine max HOM05D002277 ORTHO05D001770 9.9e-06 55.1 47 59.6


User provided reference genes

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