Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 3.7e-64 248.1 127 100.0
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 3.3e-60 235.0 127 92.9
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.5e-57 226.1 127 92.1
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 7.6e-57 223.8 127 91.3
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 1.4e-55 219.5 127 89.0
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 1.1e-52 209.9 128 85.9
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 5.2e-50 201.1 127 82.7
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 2.0e-49 199.1 128 81.2
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 3.4e-49 198.4 128 81.2
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 1.1e-47 193.4 128 82.0
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 8.7e-45 183.7 128 76.6
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 1.4e-42 176.4 128 72.7
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 6.4e-40 167.5 131 69.5
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 1.1e-39 166.8 131 68.7
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 2.2e-24 115.9 100 60.0
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 4.9e-24 114.8 88 69.3
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 6.5e-24 114.4 86 67.4
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 8.4e-24 114.0 104 61.5
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 8.4e-24 114.0 104 61.5
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 8.4e-24 114.0 141 48.9
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 1.1e-23 113.6 72 75.0
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.9e-23 112.8 84 67.9
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 1.9e-23 112.8 90 67.8
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 2.5e-23 112.5 90 67.8
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 2.5e-23 112.5 90 67.8
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 2.5e-23 112.5 90 67.8
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 3.2e-23 112.1 71 74.6
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 3.2e-23 112.1 111 56.8
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 3.2e-23 112.1 111 56.8
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 4.2e-23 111.7 87 65.5
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 4.2e-23 111.7 60 90.0
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 5.5e-23 111.3 74 71.6
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 7.1e-23 110.9 87 64.4
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 7.1e-23 110.9 90 66.7
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 7.1e-23 110.9 72 72.2
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 7.1e-23 110.9 72 72.2
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 7.1e-23 110.9 72 72.2
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 9.3e-23 110.5 72 72.2
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 9.3e-23 110.5 72 72.2
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 9.3e-23 110.5 72 72.2
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 1.2e-22 110.2 72 72.2
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 1.2e-22 110.2 72 70.8
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.7e-22 109.0 88 63.6
Psat2g025600 Pisum sativum HOM05D000540 ORTHO05D008105 2.7e-22 109.0 65 84.6
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 2.7e-22 109.0 86 65.1
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 3.5e-22 108.6 72 73.6
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 4.6e-22 108.2 72 72.2
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 6.0e-22 107.8 87 63.2
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 7.9e-22 107.5 96 63.5
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 1.3e-21 106.7 84 65.5
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 1.8e-21 106.3 110 55.5
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 2.3e-21 105.9 72 76.4
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 3.0e-21 105.5 77 74.0
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 3.9e-21 105.1 77 72.7
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 5.1e-21 104.8 84 59.5
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 5.1e-21 104.8 80 71.2
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 6.7e-21 104.4 72 75.0
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 6.7e-21 104.4 72 75.0
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 6.7e-21 104.4 80 68.8
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 6.7e-21 104.4 80 58.8
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 6.7e-21 104.4 70 75.7
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 6.7e-21 104.4 89 61.8
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 8.7e-21 104.0 89 61.8
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 1.1e-20 103.6 84 58.3
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 1.1e-20 103.6 77 72.7
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 1.1e-20 103.6 77 72.7
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.5e-20 103.2 75 65.3
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 1.9e-20 102.8 66 74.2
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 3.3e-20 102.1 80 67.5
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 4.3e-20 101.7 87 60.9
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 5.7e-20 101.3 87 60.9
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.3e-19 100.1 72 63.9
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 1.3e-19 100.1 84 61.9
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 1.6e-19 99.8 77 70.1
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.6e-19 99.8 71 64.8
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 2.2e-19 99.4 70 72.9
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 3.1e-18 95.5 100 55.0
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 5.9e-17 91.3 66 65.2
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 5.5e-15 84.7 71 60.6
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 7.2e-15 84.3 57 68.4
SGA_v2.0_scaffold507G52537 Striga asiatica HOM05D000540 ORTHO05D000681 1.2e-14 83.6 58 67.2
GSVIVG01027360001 Vitis vinifera HOM05D000540 ORTHO05D008105 2.7e-14 82.4 59 64.4
Psat4g009760 Pisum sativum HOM05D000540 ORTHO05D008105 3.6e-14 82.0 53 81.1
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 8.8e-13 77.4 76 56.6
SHI35194 Sapria himalayana HOM05D000540 ORTHO05D000681 8.2e-11 70.9 56 57.1
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.1e-10 70.5 41 78.0
Nitab4.5_0000334g0010 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.4e-10 70.1 58 58.6
SHI36701 Sapria himalayana HOM05D000540 ORTHO05D008105 1.4e-10 70.1 57 56.1
SHI51272 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-10 70.1 56 57.1
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 2.4e-10 69.3 70 51.4
ClCG00G000520 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.4e-10 69.3 70 50.0
SHI50600 Sapria himalayana HOM05D000540 ORTHO05D000681 2.4e-10 69.3 56 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 3.1e-10 68.9 70 51.4
SHI31828 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI34991 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI35858 Sapria himalayana HOM05D000540 ORTHO05D008105 3.1e-10 68.9 56 55.4
SHI37858 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI37906 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI37965 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI38052 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI38194 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI38471 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI38513 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI38589 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI38605 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI38868 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI40568 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI41069 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI43265 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI43312 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI45733 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI50522 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
SHI53542 Sapria himalayana HOM05D000540 ORTHO05D000681 3.1e-10 68.9 56 55.4
ClCG00G000530 Citrullus lanatus HOM05D000540 ORTHO05D008105 4.1e-10 68.6 80 51.2
SHI54942 Sapria himalayana HOM05D000540 ORTHO05D008105 4.1e-10 68.6 56 57.1
SHI38983 Sapria himalayana HOM05D000540 ORTHO05D008105 5.3e-10 68.2 55 56.4
SHI51026 Sapria himalayana HOM05D000540 ORTHO05D000681 5.3e-10 68.2 56 53.6
SHI27340 Sapria himalayana HOM05D000540 ORTHO05D000681 6.9e-10 67.8 56 57.1
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 1.2e-09 67.0 93 47.3
SHI49875 Sapria himalayana HOM05D000540 ORTHO05D000681 1.2e-09 67.0 56 57.1
SHI53038 Sapria himalayana HOM05D000540 ORTHO05D000681 1.2e-09 67.0 56 57.1
SHI54850 Sapria himalayana HOM05D000540 ORTHO05D008105 1.5e-09 66.6 55 54.5
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 2.6e-09 65.9 48 60.4
SHI40340 Sapria himalayana HOM05D000540 ORTHO05D000681 2.6e-09 65.9 56 53.6
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 3.4e-09 65.5 50 66.0
SHI37000 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-09 64.7 54 51.9
SHI41065 Sapria himalayana HOM05D000540 ORTHO05D000681 5.9e-09 64.7 59 54.2
Zm00001eb293400 Zea mays HOM05D042568 ORTHO05D008105 5.9e-09 64.7 47 66.0
SHI37554 Sapria himalayana HOM05D000540 ORTHO05D008105 7.7e-09 64.3 55 50.9
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 1.3e-08 63.5 67 56.7
SHI38387 Sapria himalayana HOM05D000540 ORTHO05D000681 1.7e-08 63.2 46 60.9
HanXRQChr15g0494391 Helianthus annuus HOM05D000540 ORTHO05D009557 3.8e-08 62.0 89 42.7
SHI40214 Sapria himalayana HOM05D000540 ORTHO05D000681 3.8e-08 62.0 57 50.9
Lsat_1_v5_gn_7_110000 Lactuca sativa HOM05D000540 ORTHO05D009557 5.0e-08 61.6 100 43.0
HanXRQChr11g0337241 Helianthus annuus HOM05D000540 ORTHO05D009557 6.5e-08 61.2 95 41.1
SHI37326 Sapria himalayana HOM05D000540 ORTHO05D000681 1.1e-07 60.5 56 50.0
SHI37876 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-07 60.1 56 51.8
SHI38050 Sapria himalayana HOM05D000540 ORTHO05D000681 1.4e-07 60.1 56 51.8
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 1.9e-07 59.7 75 45.3
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 3.2e-07 58.9 96 40.6
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 4.2e-07 58.5 95 41.1
Peaxi162Scf00406g00134 Petunia axillaris HOM05D001223 ORTHO05D001058 5.5e-07 58.2 34 73.5
BcaB03g14613 Brassica carinata HOM05D000142 ORTHO05D000124 7.2e-07 57.8 69 50.7
SHI40550 Sapria himalayana HOM05D000540 ORTHO05D008105 1.6e-06 56.6 45 55.6
SHI44879 Sapria himalayana HOM05D000540 ORTHO05D008105 2.1e-06 56.2 44 56.8
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 4.7e-06 55.1 63 50.8
SHI54100 Sapria himalayana HOM05D000540 ORTHO05D008105 6.1e-06 54.7 45 51.1


User provided reference genes

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