Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 0.0e+00 1253.8 737 100.0
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 2.2e-265 919.1 642 79.3
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 1.5e-258 896.3 642 78.2
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 1.0e-246 857.1 630 76.0
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 1.1e-205 720.7 646 65.3
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.1e-203 714.1 640 64.8
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 1.4e-203 713.8 663 63.5
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 5.1e-198 695.3 643 63.6
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.6e-178 630.6 592 61.8
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 5.2e-142 509.2 641 51.8
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 2.6e-125 453.8 646 47.8
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 6.9e-110 402.5 610 45.1
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 1.3e-103 381.7 643 43.4
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-99 368.6 578 45.2
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 1.8e-97 361.3 595 45.0
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 2.8e-95 354.0 658 42.1
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 4.1e-94 350.1 666 41.7
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 1.5e-93 348.2 641 41.8
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 2.6e-93 347.4 541 47.1
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 3.2e-91 340.5 677 41.2
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 7.2e-91 339.3 580 44.0
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 1.6e-90 338.2 657 40.8
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 3.9e-89 333.6 709 39.4
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 5.1e-89 333.2 713 39.6
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 3.3e-88 330.5 596 44.0
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 4.3e-88 330.1 679 39.8
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 7.4e-88 329.3 714 39.2
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.3e-87 328.6 597 43.2
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 3.7e-87 327.0 588 43.2
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 1.1e-86 325.5 634 39.9
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 1.9e-83 314.7 579 43.0
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 4.7e-82 310.1 579 42.5
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 3.9e-81 307.0 653 39.5
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 8.8e-81 305.8 660 37.3
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 3.3e-80 303.9 735 36.2
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 9.7e-80 302.4 661 38.6
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 8.2e-79 299.3 641 37.4
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 9.1e-78 295.8 596 40.1
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 2.9e-76 290.8 597 40.2
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 1.1e-75 288.9 627 38.1
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 1.5e-72 278.5 738 35.2
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 5.7e-72 276.6 698 35.2
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 9.7e-72 275.8 650 37.4
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.4e-70 271.2 594 38.9
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 1.0e-68 265.8 649 37.9
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.3e-68 265.4 677 35.2
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 1.6e-66 258.5 627 36.0
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 6.1e-66 256.5 620 38.4
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 5.2e-65 253.4 554 37.0
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 6.8e-65 253.1 627 36.5
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 3.4e-64 250.8 669 36.3
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 4.4e-64 250.4 642 36.4
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 6.3e-63 246.5 617 35.7
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 3.1e-62 244.2 630 35.6
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 5.4e-62 243.4 295 53.9
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 9.1e-62 242.7 618 36.4
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 1.3e-60 238.8 619 35.4
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.7e-60 238.4 812 31.4
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.8e-60 237.3 637 34.7
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.1e-59 235.7 817 31.5
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 1.5e-59 235.3 785 31.7
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 4.2e-59 233.8 626 35.9
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 2.1e-58 231.5 633 36.8
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 2.7e-58 231.1 660 35.0
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.6e-58 230.7 615 36.3
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.0e-57 229.2 617 37.3
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 6.8e-57 226.5 547 39.7
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 6.8e-57 226.5 638 35.4
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 2.0e-56 224.9 579 36.8
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 1.3e-55 222.2 611 35.0
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 1.1e-54 219.2 484 37.2
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.4e-54 218.0 697 33.7
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.9e-52 211.1 636 33.2
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 8.6e-52 209.5 492 38.6
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.5e-51 208.8 663 33.6
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.9e-51 208.4 651 34.4
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 4.2e-51 207.2 609 33.5
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 9.5e-51 206.1 737 31.2
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.2e-50 205.7 669 33.5
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.1e-50 204.9 630 34.6
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 1.8e-49 201.8 520 35.8
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 8.9e-49 199.5 559 33.5
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 3.4e-48 197.6 542 32.7
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 4.4e-48 197.2 562 33.6
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 5.7e-48 196.8 616 33.9
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 9.8e-48 196.1 651 34.3
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 8.3e-47 193.0 667 31.2
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 2.4e-46 191.4 627 33.2
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 3.2e-46 191.0 543 36.1
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 5.4e-46 190.3 650 31.4
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 3.5e-45 187.6 578 32.5
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 3.5e-45 187.6 578 32.5
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.0e-44 186.0 563 31.4
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 1.0e-44 186.0 579 32.5
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.3e-44 185.7 527 33.0
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 3.9e-44 184.1 535 35.9
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 5.0e-44 183.7 580 31.9
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 8.6e-44 183.0 562 33.1
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 5.6e-43 180.3 640 30.5
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 4.7e-42 177.2 560 32.1
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 3.4e-40 171.0 627 31.1
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.3e-39 169.1 563 31.6
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 1.9e-38 165.2 499 33.9
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 4.1e-38 164.1 557 33.8
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 1.6e-37 162.2 552 31.9
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.0e-37 161.8 551 31.6
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 2.7e-37 161.4 482 33.6
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 1.3e-36 159.1 538 30.7
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 2.5e-35 154.8 560 32.0
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 9.5e-35 152.9 560 31.6
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 1.2e-34 152.5 548 31.4
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 4.1e-30 137.5 342 33.9
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.0e-28 132.9 539 29.1
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 6.6e-28 130.2 369 36.6
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 5.6e-27 127.1 523 31.0
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.2e-26 125.9 549 29.5
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 2.0e-24 118.6 334 30.2
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 6.4e-23 113.6 569 29.5
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.9e-22 112.1 301 36.9
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 1.0e-20 106.3 218 40.4
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.3e-20 105.9 516 30.8
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 3.0e-20 104.8 363 31.7
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 3.9e-20 104.4 534 26.4
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.2e-18 99.4 370 31.6
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 2.8e-18 98.2 167 43.1
AagrBONN_evm.TU.Sc2ySwM_228.4811 Anthoceros agrestis HOM05D005926 ORTHO05D007001 9.9e-08 63.2 353 29.5


User provided reference genes

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