Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 4.0e-252 875.2 814 100.0
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 9.3e-209 731.1 852 89.0
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.7e-125 454.5 698 79.4
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 4.6e-99 366.7 769 70.0
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 4.5e-94 350.1 315 82.5
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.6e-59 234.2 230 58.7
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 1.3e-56 225.7 231 56.3
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.6e-54 218.8 203 63.1
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 2.5e-52 211.5 656 70.9
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 2.3e-50 204.9 192 61.5
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 1.4e-47 195.7 560 65.7
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 2.5e-44 184.9 287 49.1
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 1.3e-37 162.5 204 47.1
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 4.0e-34 151.0 211 45.0
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 7.5e-33 146.7 218 45.9
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 1.7e-32 145.6 220 35.9
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 1.9e-31 142.1 232 40.1
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 5.4e-31 140.6 168 42.3
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.6e-30 139.0 178 41.6
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 2.7e-30 138.3 234 37.6
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 1.0e-29 136.3 162 47.5
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 1.0e-29 136.3 178 43.8
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.3e-29 136.0 225 40.0
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.7e-29 135.6 220 39.1
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 3.0e-29 134.8 163 47.2
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 5.1e-29 134.0 216 37.0
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.9e-28 132.1 242 33.1
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 5.6e-28 130.6 170 47.6
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 7.3e-28 130.2 208 36.5
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 7.3e-28 130.2 170 41.2
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 9.5e-28 129.8 213 38.0
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 9.5e-28 129.8 175 41.7
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.2e-27 129.4 206 38.8
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.6e-27 129.0 213 38.0
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.1e-27 128.6 171 39.8
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 2.1e-27 128.6 167 44.9
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.8e-27 128.3 207 34.8
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 3.6e-27 127.9 213 37.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 6.2e-27 127.1 210 37.1
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 6.2e-27 127.1 189 40.7
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 6.2e-27 127.1 169 44.4
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 1.1e-26 126.3 206 36.4
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.4e-26 125.9 205 36.6
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.8e-26 125.6 178 38.2
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 1.8e-26 125.6 165 41.2
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.0e-26 124.4 168 38.7
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 5.2e-26 124.0 206 36.9
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 5.2e-26 124.0 206 36.9
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 6.8e-26 123.6 201 35.3
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.9e-26 123.2 201 35.3
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 1.2e-25 122.9 145 44.8
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 2.0e-25 122.1 165 40.6
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 3.4e-25 121.3 180 38.3
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 3.4e-25 121.3 199 37.2
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 4.4e-25 120.9 195 37.9
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 5.8e-25 120.6 145 44.1
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 9.9e-25 119.8 195 37.4
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 2.9e-24 118.2 170 38.8
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 4.9e-24 117.5 156 40.4
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 6.4e-24 117.1 146 46.6
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 6.4e-24 117.1 158 41.8
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.1e-23 116.3 187 34.2
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.4e-23 115.9 208 37.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 3.2e-23 114.8 149 40.3
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 5.4e-23 114.0 207 36.2
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 5.4e-23 114.0 223 34.1
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 7.1e-23 113.6 149 42.3
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 9.2e-23 113.2 179 36.9
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.2e-22 112.8 141 42.6
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.2e-22 112.8 181 34.8
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 1.2e-22 112.8 179 38.0
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 1.2e-22 112.8 180 35.6
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.6e-22 112.5 164 39.6
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.6e-22 112.5 149 38.9
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 2.7e-22 111.7 180 38.3
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 2.7e-22 111.7 183 38.3
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 2.7e-22 111.7 175 37.7
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 3.5e-22 111.3 186 37.1
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 3.5e-22 111.3 154 40.9
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 6.0e-22 110.5 220 32.7
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 7.8e-22 110.2 167 41.3
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 7.8e-22 110.2 147 38.8
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.3e-21 109.4 173 38.7
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 3.0e-21 108.2 205 35.6
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 8.6e-21 106.7 159 37.1
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 8.6e-21 106.7 205 35.6
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.5e-20 105.9 205 35.1
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 1.5e-20 105.9 140 41.4
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 3.3e-20 104.8 169 37.9
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 4.3e-20 104.4 158 36.1
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 4.3e-20 104.4 176 33.5
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 4.3e-20 104.4 171 34.5
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 2.1e-19 102.1 149 40.9
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 4.7e-19 100.9 167 35.9
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 8.1e-19 100.1 200 30.5
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 8.1e-19 100.1 247 34.0
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.8e-18 99.0 205 30.2
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 1.8e-18 99.0 195 35.4
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 1.8e-18 99.0 143 40.6
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 2.4e-18 98.6 217 33.6
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 3.1e-18 98.2 166 35.5
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.0e-18 97.8 260 26.9
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.2e-17 96.3 185 31.9
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 2.6e-17 95.1 178 34.3
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 2.6e-17 95.1 110 43.6
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 4.9e-16 90.9 89 50.6
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 4.9e-16 90.9 211 29.4
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 1.1e-15 89.7 150 33.3
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 1.4e-15 89.4 99 51.5
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 3.2e-15 88.2 222 32.4
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 4.2e-15 87.8 127 34.6
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 7.1e-15 87.0 109 40.4
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 7.1e-15 87.0 200 31.5
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 2.1e-14 85.5 175 37.1
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.5e-14 84.7 186 34.4
Medtr1g113020 Medicago truncatula HOM05D004824 ORTHO05D003903 1.0e-13 83.2 93 62.4
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.9e-13 81.3 162 34.6
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 3.9e-13 81.3 176 28.4
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 5.6e-12 77.4 198 29.3
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.1e-11 75.5 161 32.3
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 3.6e-11 74.7 70 51.4
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 4.7e-11 74.3 116 34.5
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 1.4e-10 72.8 196 29.1
Haze_08182 Corylus avellana HOM05D007893 ORTHO05D010042 3.1e-10 71.6 191 25.1
Cfa012483 Carpinus fangiana HOM05D007893 ORTHO05D010042 5.3e-10 70.9 160 25.6
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 1.5e-09 69.3 230 26.1
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 4.4e-09 67.8 179 26.3
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 1.7e-08 65.9 114 36.0
Psat1g055280 Pisum sativum HOM05D007358 ORTHO05D009117 3.8e-08 64.7 170 30.0
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 6.4e-08 63.9 205 26.3
Zm00001eb413560 Zea mays HOM05D026208 ORTHO05D030341 6.4e-08 63.9 197 26.9
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 1.4e-07 62.8 186 24.7
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 1.4e-07 62.8 77 41.6
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 3.2e-07 61.6 201 26.4
Peaxi162Scf01229g00021 Petunia axillaris HOM05D007455 ORTHO05D009431 4.2e-07 61.2 92 38.0
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 5.4e-07 60.8 186 24.7
Nitab4.5_0002310g0060 Nicotiana tabacum HOM05D007893 ORTHO05D010042 5.4e-07 60.8 154 24.7
SHI33202 Sapria himalayana HOM05D008459 ORTHO05D003903 5.4e-07 60.8 142 28.2
DCAR_012172 Daucus carota HOM05D007893 ORTHO05D010042 7.1e-07 60.5 154 24.7
TPR.G6545 Trifolium pratense HOM05D007893 ORTHO05D010042 7.1e-07 60.5 153 25.5
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 9.3e-07 60.1 93 35.5
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 1.2e-06 59.7 182 22.0
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 1.2e-06 59.7 176 28.4
PGR031G2821 Punica granatum HOM05D007763 ORTHO05D009537 1.2e-06 59.7 221 25.3
TPR.G8086 Trifolium pratense HOM05D007893 ORTHO05D010042 1.2e-06 59.7 230 25.2
Ca_08153_v3 Cicer arietinum L. HOM05D007893 ORTHO05D010042 1.6e-06 59.3 156 24.4
Phvul.002G138600 Phaseolus vulgaris HOM05D007893 ORTHO05D010042 2.1e-06 58.9 241 23.2
RcHm_v2.0_Chr3g0484571 Rosa chinensis HOM05D007893 ORTHO05D010042 2.1e-06 58.9 153 21.6
VMungo1309G1576 Vigna mungo HOM05D000104 ORTHO05D009920 2.1e-06 58.9 177 29.4
SHI28137 Sapria himalayana HOM05D008459 ORTHO05D003903 2.7e-06 58.5 143 26.6
Lsat_1_v5_gn_3_23061 Lactuca sativa HOM05D008483 ORTHO05D010726 3.5e-06 58.2 239 27.6
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 6.0e-06 57.4 177 26.0
PSO017G5257 Papaver somniferum HOM05D007545 ORTHO05D009579 6.0e-06 57.4 168 25.6
EL10Ac6g15337 Beta vulgaris HOM05D006931 ORTHO05D008782 7.8e-06 57.0 190 26.3
SHI16405 Sapria himalayana HOM05D007358 ORTHO05D009117 7.8e-06 57.0 171 27.5
Sed0019973 Sechium edule HOM05D006931 ORTHO05D008782 7.8e-06 57.0 178 24.2


User provided reference genes

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