Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 6.1e-127 459.5 633 100.0
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 1.9e-83 315.1 197 83.2
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.2e-71 275.8 204 74.5
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 5.4e-67 260.4 184 74.5
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.4e-62 245.0 207 67.6
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 6.4e-60 236.9 221 60.6
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 3.1e-54 218.0 203 63.1
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 2.3e-41 175.3 199 51.8
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 1.8e-38 165.6 185 50.8
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 3.1e-38 164.9 203 47.8
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 3.4e-37 161.4 191 48.2
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 2.1e-34 152.1 96 81.2
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 3.5e-34 151.4 174 50.6
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 3.0e-33 148.3 211 45.5
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 5.7e-32 144.1 139 55.4
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 1.3e-31 142.9 197 45.2
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 4.8e-31 141.0 174 46.6
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 1.1e-30 139.8 190 46.3
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 9.0e-30 136.7 168 49.4
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 6.5e-28 130.6 148 45.3
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 8.4e-28 130.2 174 45.4
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 1.9e-27 129.0 152 44.1
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 4.2e-27 127.9 198 38.4
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 2.7e-26 125.2 143 45.5
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 2.7e-26 125.2 148 43.2
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 1.0e-25 123.2 149 40.3
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 1.8e-25 122.5 145 44.8
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 2.3e-25 122.1 139 44.6
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 5.1e-25 120.9 161 41.0
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 5.1e-25 120.9 194 38.7
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 5.1e-25 120.9 200 36.0
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 5.1e-25 120.9 168 41.1
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 8.7e-25 120.2 155 41.3
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.5e-24 119.4 173 39.9
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 5.7e-24 117.5 151 42.4
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 5.7e-24 117.5 177 41.2
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 9.7e-24 116.7 173 37.0
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 1.3e-23 116.3 155 40.6
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.2e-23 115.5 151 42.4
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 2.2e-23 115.5 207 36.7
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 2.8e-23 115.2 193 37.3
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 6.3e-23 114.0 154 40.3
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 6.3e-23 114.0 139 41.7
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 6.3e-23 114.0 199 36.2
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 8.2e-23 113.6 179 35.2
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 8.2e-23 113.6 190 35.8
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 1.4e-22 112.8 205 35.1
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 1.4e-22 112.8 177 39.5
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.4e-22 112.1 188 38.3
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 2.4e-22 112.1 151 41.1
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.1e-22 111.3 188 38.3
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 6.9e-22 110.5 197 36.0
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 9.0e-22 110.2 193 37.3
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.2e-21 109.8 144 38.9
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 2.0e-21 109.0 148 39.9
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 2.0e-21 109.0 173 36.4
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 2.6e-21 108.6 178 37.6
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 2.6e-21 108.6 140 40.7
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 4.5e-21 107.8 146 39.0
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 4.5e-21 107.8 186 34.9
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 5.9e-21 107.5 142 40.8
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 5.9e-21 107.5 196 34.7
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 5.9e-21 107.5 185 35.1
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 1.0e-20 106.7 186 34.9
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 1.7e-20 105.9 150 38.7
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 2.9e-20 105.1 124 42.7
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 5.0e-20 104.4 194 37.6
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 6.5e-20 104.0 168 36.9
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 6.5e-20 104.0 141 41.8
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 8.5e-20 103.6 186 36.6
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 8.5e-20 103.6 168 36.9
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 1.1e-19 103.2 148 37.2
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.9e-19 102.4 148 37.8
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 5.5e-19 100.9 148 35.1
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 9.4e-19 100.1 162 38.9
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 1.2e-18 99.8 153 34.6
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.6e-18 99.4 160 35.0
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 2.1e-18 99.0 171 33.9
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 4.6e-18 97.8 171 34.5
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 6.1e-18 97.4 172 37.8
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 3.0e-17 95.1 156 39.1
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 5.1e-17 94.4 212 28.8
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.1e-16 93.2 197 31.0
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 2.0e-16 92.4 152 37.5
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 2.0e-16 92.4 210 31.9
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 5.7e-16 90.9 178 34.3
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 7.4e-16 90.5 91 57.1
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 9.7e-16 90.1 178 34.3
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.7e-15 89.4 148 33.1
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 2.2e-15 89.0 172 34.3
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.2e-15 89.0 160 32.5
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 2.2e-15 89.0 113 41.6
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 2.8e-15 88.6 178 33.7
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 2.8e-15 88.6 185 31.4
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 2.8e-15 88.6 168 31.5
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 3.7e-15 88.2 200 34.5
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 6.3e-15 87.4 144 30.6
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 8.2e-15 87.0 137 35.8
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.1e-14 86.7 142 38.7
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 1.8e-14 85.9 148 31.8
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 4.1e-14 84.7 197 32.5
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 5.3e-14 84.3 152 33.6
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 1.2e-13 83.2 199 31.7
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 3.4e-13 81.6 98 50.0
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 4.5e-13 81.3 103 43.7
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 3.8e-12 78.2 172 29.1
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 5.0e-12 77.8 186 32.3
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 6.5e-12 77.4 194 30.9
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 1.1e-11 76.6 146 34.9
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 9.4e-11 73.6 197 33.0
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 1.2e-10 73.2 155 27.7
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 1.4e-09 69.7 88 48.9
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 8.8e-09 67.0 135 28.9
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 9.7e-08 63.5 177 32.2
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 2.8e-07 62.0 146 28.1
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 3.7e-07 61.6 77 46.8


User provided reference genes

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