Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 2.1e-51 205.3 98 100.0
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 4.2e-47 191.0 98 92.9
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.1e-42 174.9 98 86.7
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 8.5e-40 166.8 99 83.8
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 4.2e-39 164.5 98 78.6
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 1.4e-37 159.5 92 83.7
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 3.0e-37 158.3 98 81.6
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.5e-36 156.0 98 76.5
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 2.5e-36 155.2 97 74.2
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.2e-35 152.1 87 79.3
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 4.8e-35 151.0 96 75.0
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 6.3e-35 150.6 89 76.4
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 6.3e-35 150.6 89 79.8
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 8.2e-35 150.2 93 79.6
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 1.4e-34 149.4 89 78.7
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 3.1e-34 148.3 87 77.0
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 1.2e-33 146.4 88 77.3
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.2e-33 146.4 97 68.0
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.6e-33 145.2 94 71.3
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.6e-33 145.2 89 73.0
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 3.4e-33 144.8 96 76.0
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 4.5e-33 144.4 96 71.9
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 5.9e-33 144.1 94 70.2
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 7.7e-33 143.7 94 70.2
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.0e-32 143.3 94 70.2
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.7e-32 142.5 95 73.7
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 2.2e-32 142.1 94 70.2
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 5.0e-32 141.0 90 75.6
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 6.5e-32 140.6 85 78.8
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 8.5e-32 140.2 99 68.7
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 8.5e-32 140.2 79 82.3
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.1e-31 139.8 99 68.7
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 1.4e-31 139.4 89 75.3
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.9e-31 139.0 88 72.7
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 3.2e-31 138.3 88 71.6
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.2e-31 138.3 99 68.7
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 4.2e-31 137.9 88 71.6
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 5.5e-31 137.5 81 77.8
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 7.2e-31 137.1 89 75.3
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 7.2e-31 137.1 89 75.3
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 9.4e-31 136.7 96 63.5
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 9.4e-31 136.7 99 66.7
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 1.2e-30 136.3 91 70.3
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 1.2e-30 136.3 100 63.0
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 2.1e-30 135.6 86 74.4
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 2.7e-30 135.2 86 74.4
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 3.6e-30 134.8 98 67.3
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 4.7e-30 134.4 87 71.3
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-29 133.3 86 68.6
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.0e-29 133.3 88 76.1
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.4e-29 132.9 94 66.0
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.4e-29 132.9 94 66.0
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 2.3e-29 132.1 90 71.1
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.0e-29 131.7 76 76.3
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 3.0e-29 131.7 88 72.7
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 5.1e-29 131.0 103 62.1
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 6.7e-29 130.6 81 71.6
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 6.7e-29 130.6 81 71.6
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 6.7e-29 130.6 92 67.4
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 8.8e-29 130.2 89 73.0
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 8.8e-29 130.2 88 71.6
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 1.1e-28 129.8 97 64.9
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.5e-28 129.4 98 62.2
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.5e-28 129.4 101 61.4
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 2.0e-28 129.0 90 66.7
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.0e-28 129.0 89 66.3
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.0e-28 129.0 98 62.2
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 2.0e-28 129.0 85 72.9
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 2.6e-28 128.6 78 71.8
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 2.6e-28 128.6 78 71.8
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 2.6e-28 128.6 76 73.7
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 3.3e-28 128.3 87 70.1
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 4.4e-28 127.9 89 71.9
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 4.4e-28 127.9 77 76.6
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 4.4e-28 127.9 84 73.8
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 5.7e-28 127.5 85 71.8
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 5.7e-28 127.5 90 72.2
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 7.4e-28 127.1 90 65.6
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 7.4e-28 127.1 95 66.3
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 7.4e-28 127.1 82 72.0
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 7.4e-28 127.1 72 79.2
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 9.7e-28 126.7 92 65.2
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.3e-27 126.3 100 62.0
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.1e-26 123.2 79 72.2
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 1.1e-26 123.2 75 80.0
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 1.4e-26 122.9 80 71.2
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 1.4e-26 122.9 72 76.4
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 3.1e-26 121.7 93 61.3
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 3.1e-26 121.7 83 68.7
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 4.1e-26 121.3 95 63.2
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 9.1e-26 120.2 76 71.1
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.2e-25 119.8 93 61.3
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.2e-25 119.8 87 65.5
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.2e-25 119.8 73 75.3
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 1.5e-25 119.4 76 69.7
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 1.5e-25 119.4 74 78.4
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 2.0e-25 119.0 75 73.3
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 2.0e-25 119.0 82 69.5
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 2.6e-25 118.6 88 63.6
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.6e-25 118.6 87 64.4
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 3.5e-25 118.2 93 59.1
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 4.5e-25 117.9 93 61.3
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.9e-25 117.5 102 61.8
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.9e-25 117.5 102 61.8
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 1.0e-24 116.7 102 57.8
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 2.2e-24 115.5 87 63.2
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 2.2e-24 115.5 87 63.2
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 3.8e-24 114.8 88 65.9
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 5.0e-24 114.4 87 64.4
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 6.5e-24 114.0 75 69.3
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 6.5e-24 114.0 75 69.3
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 8.5e-24 113.6 75 68.0
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 1.1e-23 113.2 80 67.5
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 1.5e-23 112.8 80 68.8
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 1.9e-23 112.5 83 65.1
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.5e-23 112.1 79 69.6
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 9.4e-23 110.2 78 66.7
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 1.2e-22 109.8 79 65.8
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-22 109.8 69 72.5
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.2e-22 109.8 69 72.5
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.1e-22 109.0 79 65.8
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 2.7e-22 108.6 62 79.0
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-22 108.6 62 79.0
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 4.7e-22 107.8 62 77.4
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 4.7e-22 107.8 81 65.4
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 6.1e-22 107.5 86 58.1
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 6.1e-22 107.5 67 73.1
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 1.0e-21 106.7 74 68.9
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.0e-21 106.7 81 65.4
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.4e-21 106.3 61 77.0
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.0e-21 104.8 61 75.4
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 3.3e-20 101.7 90 52.2
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 7.4e-20 100.5 91 56.0
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 9.7e-20 100.1 89 55.1
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 3.7e-19 98.2 72 59.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.8e-18 95.9 92 52.2
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 2.4e-18 95.5 79 57.0
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.5e-17 91.7 67 61.2
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 5.9e-17 90.9 62 64.5
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 5.9e-17 90.9 62 64.5
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.3e-16 89.7 62 64.5
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.3e-16 89.7 62 69.4
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.7e-16 89.4 83 51.8
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.5e-16 87.4 56 71.4
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 6.5e-16 87.4 56 67.9
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 8.5e-16 87.0 65 61.5
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 2.5e-15 85.5 56 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 7.2e-15 84.0 62 58.1
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.7e-14 82.0 61 62.3
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.0e-13 78.6 56 66.1
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 3.0e-13 78.6 63 50.8
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 5.2e-13 77.8 106 41.5
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.6e-12 75.5 44 72.7
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.7e-12 74.3 42 78.6
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 2.0e-09 65.9 70 47.1
GSVIVG01015950001 Vitis vinifera HOM05D004571 ORTHO05D005334 3.2e-07 58.5 46 56.5
Cre12.g515150 Chlamydomonas reinhardtii HOM05D004571 ORTHO05D005334 1.2e-06 56.6 61 44.3
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 3.6e-06 55.1 29 79.3


User provided reference genes

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