Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25508 Trifolium pratense HOM05D011778 ORTHO05D012624 1.6e-164 582.8 320 100.0
Medtr3g007480 Medicago truncatula HOM05D011778 ORTHO05D012624 6.8e-54 215.3 181 67.4
Psat5g229640 Pisum sativum HOM05D011778 ORTHO05D012624 1.0e-49 201.4 174 60.9
Psat5g230000 Pisum sativum HOM05D011778 ORTHO05D012624 3.2e-43 179.9 105 77.1
Glyma.06G315700 Glycine max HOM05D011778 ORTHO05D012624 3.1e-30 136.7 170 44.1
Lj3g0018117 Lotus japonicus HOM05D011778 ORTHO05D012624 2.6e-29 133.7 137 47.4
Glyma.04G129900 Glycine max HOM05D011778 ORTHO05D012624 1.7e-28 131.0 132 51.5
Glyma.04G129700 Glycine max HOM05D011778 ORTHO05D012624 8.3e-28 128.6 188 42.0
VMungo0647G2372 Vigna mungo HOM05D011778 ORTHO05D012624 1.4e-27 127.9 95 60.0
Lalb_Chr18g0049101 Lupinus albus HOM05D011778 ORTHO05D012624 7.8e-26 122.1 142 47.9
Phvul.008G161400 Phaseolus vulgaris HOM05D011778 ORTHO05D012624 3.9e-25 119.8 94 57.4
Lalb_Chr15g0079601 Lupinus albus HOM05D011778 ORTHO05D012624 4.7e-23 112.8 145 44.8
Glyma.06G315202 Glycine max HOM05D011778 ORTHO05D012624 1.8e-22 110.9 71 70.4
VMungo1127G1301 Vigna mungo HOM05D022505 ORTHO05D012624 2.2e-20 104.0 125 44.8
arahy.Tifrunner.gnm1.ann1.1W2EAK Arachis hypogaea HOM05D011778 ORTHO05D012624 4.1e-19 99.8 124 45.2
arahy.Tifrunner.gnm1.ann1.XJN7SY Arachis hypogaea HOM05D011778 ORTHO05D012624 4.1e-19 99.8 124 45.2
Manes.10G070600 Manihot esculenta HOM05D000881 ORTHO05D000666 1.1e-14 85.1 90 42.2
MD02G1259500 Malus domestica HOM05D000881 ORTHO05D000666 9.0e-14 82.0 89 40.4
Prupe.2G065600 Prunus persica HOM05D000881 ORTHO05D000666 1.7e-12 77.8 91 38.5
TWI38G1417 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 6.4e-12 75.9 89 40.4
Thhalv10014066m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 8.4e-12 75.5 89 41.6
RcHm_v2.0_Chr1g0331581 Rosa chinensis HOM05D000881 ORTHO05D000666 1.1e-11 75.1 94 37.2
FvH4_7g05240 Fragaria vesca HOM05D000881 ORTHO05D000666 1.4e-11 74.7 89 37.1
Sp6g37930 Schrenkiella parvula HOM05D000881 ORTHO05D000666 1.4e-11 74.7 89 42.7
A03p01910 Brassica napus HOM05D000881 ORTHO05D000666 2.4e-11 73.9 89 41.6
BraA03t09561Z Brassica rapa HOM05D000881 ORTHO05D000666 2.4e-11 73.9 89 41.6
FAN03G3143 Fragaria x ananassa HOM05D000881 ORTHO05D000666 3.2e-11 73.6 89 37.1
BcaNung05155 Brassica carinata HOM05D000881 ORTHO05D000666 4.2e-11 73.2 89 40.4
Eucgr.G02656 Eucalyptus grandis HOM05D000881 ORTHO05D000666 4.2e-11 73.2 90 35.6
BcaB01g05921 Brassica carinata HOM05D000881 ORTHO05D000666 7.1e-11 72.4 89 40.4
C03p02280 Brassica napus HOM05D000881 ORTHO05D000666 7.1e-11 72.4 89 40.4
Peaxi162Scf00647g00136 Petunia axillaris HOM05D000881 ORTHO05D000666 7.1e-11 72.4 97 38.1
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 1.2e-10 71.6 89 38.2
Oeu027605.1 Olea europaea HOM05D000881 ORTHO05D000666 1.2e-10 71.6 92 40.2
Actinidia24915 Actinidia chinensis HOM05D000881 ORTHO05D000666 1.6e-10 71.2 136 32.4
Ciclev10016030m.g Citrus clementina HOM05D000881 ORTHO05D000666 2.1e-10 70.9 151 30.5
Manes.07G083200 Manihot esculenta HOM05D000881 ORTHO05D000666 2.1e-10 70.9 171 30.4
Actinidia17465 Actinidia chinensis HOM05D038880 ORTHO05D000666 2.7e-10 70.5 155 33.5
Carub.0006s0381 Capsella rubella HOM05D000881 ORTHO05D000666 2.7e-10 70.5 89 39.3
DCAR_011554 Daucus carota HOM05D000881 ORTHO05D000666 2.7e-10 70.5 92 37.0
Phvul.003G276200 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 2.7e-10 70.5 128 28.9
AT5G04890 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 3.5e-10 70.1 89 39.3
FAN06G2536 Fragaria x ananassa HOM05D000881 ORTHO05D000666 3.5e-10 70.1 134 31.3
THA.LOC104816480 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 3.5e-10 70.1 136 30.9
CANSAT56G0189 Cannabis sativa HOM05D000881 ORTHO05D000666 4.6e-10 69.7 133 33.8
MD07G1061000 Malus domestica HOM05D000881 ORTHO05D000666 4.6e-10 69.7 90 38.9
Phvul.001G133500 Phaseolus vulgaris HOM05D022505 ORTHO05D012624 4.6e-10 69.7 54 55.6
HanXRQChr17g0559031 Helianthus annuus HOM05D000881 ORTHO05D000666 7.8e-10 68.9 90 41.1
Sabra08G0008400 Salix brachista HOM05D000881 ORTHO05D000666 7.8e-10 68.9 97 34.0
CDE07G1560 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 1.3e-09 68.2 89 33.7
Cc00_g20150 Coffea canephora HOM05D000881 ORTHO05D000666 1.3e-09 68.2 90 43.3
Nitab4.5_0004014g0050 Nicotiana tabacum HOM05D000881 ORTHO05D000666 1.3e-09 68.2 89 37.1
HPP92_028054 Vanilla planifolia HOM05D000881 ORTHO05D000666 1.3e-09 68.2 295 21.4
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 1.7e-09 67.8 93 36.6
Glyma.06G316200 Glycine max HOM05D000881 ORTHO05D000666 1.7e-09 67.8 92 33.7
Nn2g14496 Nelumbo nucifera HOM05D000881 ORTHO05D000666 1.7e-09 67.8 91 37.4
Potri.008G013800 Populus trichocarpa HOM05D000881 ORTHO05D000666 1.7e-09 67.8 89 37.1
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 2.3e-09 67.4 92 42.4
HanXRQChr11g0326381 Helianthus annuus HOM05D000881 ORTHO05D000666 2.3e-09 67.4 90 38.9
Sc06g0002830 Simmondsia chinensis HOM05D000881 ORTHO05D000666 2.3e-09 67.4 90 36.7
Sc21g0006600 Simmondsia chinensis HOM05D000881 ORTHO05D000666 2.3e-09 67.4 92 39.1
BcaC06g32196 Brassica carinata HOM05D000881 ORTHO05D000666 3.0e-09 67.0 89 37.1
CDE04G2129 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 3.0e-09 67.0 89 32.6
MD07G1061100 Malus domestica HOM05D000881 ORTHO05D000666 3.0e-09 67.0 90 36.7
Phvul.005G011300 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 3.0e-09 67.0 101 31.7
QL04p049792 Quercus lobata HOM05D000881 ORTHO05D000666 3.0e-09 67.0 164 32.3
QL04p049805 Quercus lobata HOM05D000881 ORTHO05D000666 3.0e-09 67.0 163 33.1
BolC9t59936H Brassica oleracea HOM05D000881 ORTHO05D000666 3.9e-09 66.6 89 38.2
AUR62034145 Chenopodium quinoa HOM05D000881 ORTHO05D000666 3.9e-09 66.6 141 33.3
Aqoxy3G03278 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 5.1e-09 66.2 90 35.6
Lsat_1_v5_gn_1_87140 Lactuca sativa HOM05D000881 ORTHO05D000666 5.1e-09 66.2 89 38.2
MBI11_g07703_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 5.1e-09 66.2 267 22.1
Cfa010462 Carpinus fangiana HOM05D045047 ORTHO05D000666 8.7e-09 65.5 89 36.0
CiPaw.14G037000 Carya illinoinensis HOM05D000881 ORTHO05D000666 8.7e-09 65.5 90 37.8
Manes.14G075100 Manihot esculenta HOM05D000881 ORTHO05D000666 8.7e-09 65.5 93 33.3
SalBow4G2822 Salvia bowleyana HOM05D000881 ORTHO05D000666 8.7e-09 65.5 92 40.2
PGSC0003DMG400027498 Solanum tuberosum HOM05D000881 ORTHO05D000666 8.7e-09 65.5 89 37.1
TPR.G144 Trifolium pratense HOM05D000881 ORTHO05D000666 8.7e-09 65.5 91 36.3
Nn4g23057 Nelumbo nucifera HOM05D000881 ORTHO05D000666 1.1e-08 65.1 100 33.0
BolC2t06177H Brassica oleracea HOM05D010059 ORTHO05D000666 1.5e-08 64.7 84 38.1
Peaxi162Scf00089g00843 Petunia axillaris HOM05D000136 ORTHO05D000080 1.5e-08 64.7 289 23.5
Thecc.02G162200 Theobroma cacao HOM05D000881 ORTHO05D000666 1.5e-08 64.7 96 34.4
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 1.5e-08 64.7 99 32.3
MBI11_g45239_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.9e-08 64.3 90 32.2
MD06G1188500 Malus domestica HOM05D000881 ORTHO05D000666 1.9e-08 64.3 95 30.5
AUR62014290 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.5e-08 63.9 191 29.3
Prupe.6G151500 Prunus persica HOM05D000881 ORTHO05D000666 2.5e-08 63.9 92 32.6
ECA232G3228 Erigeron canadensis HOM05D000881 ORTHO05D000666 3.3e-08 63.5 167 28.7
TWI75G0903 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 3.3e-08 63.5 90 34.4
Ah.08g222530 Amaranthus hybridus HOM05D000881 ORTHO05D000666 4.3e-08 63.2 94 36.2
Glyma.04G130100 Glycine max HOM05D000881 ORTHO05D000666 4.3e-08 63.2 96 31.2
Gohir.A03G163700 Gossypium hirsutum HOM05D010059 ORTHO05D000666 4.3e-08 63.2 90 34.4
Oeu027039.1 Olea europaea HOM05D000881 ORTHO05D000666 4.3e-08 63.2 90 37.8
Ah.02g113200 Amaranthus hybridus HOM05D000881 ORTHO05D000666 5.6e-08 62.8 97 38.1
EL10Ac4g08752 Beta vulgaris HOM05D000881 ORTHO05D000666 5.6e-08 62.8 223 28.3
CiPaw.13G046400 Carya illinoinensis HOM05D000881 ORTHO05D000666 5.6e-08 62.8 90 32.2
Nitab4.5_0001611g0050 Nicotiana tabacum HOM05D000881 ORTHO05D000666 5.6e-08 62.8 89 36.0
Solyc01g096980.2 Solanum lycopersicum HOM05D000881 ORTHO05D000666 5.6e-08 62.8 90 36.7
Glyma.15G216700 Glycine max HOM05D000881 ORTHO05D000666 7.3e-08 62.4 184 28.3
Lj3g0025354 Lotus japonicus HOM05D000881 ORTHO05D000666 7.3e-08 62.4 98 33.7
MD14G1194900 Malus domestica HOM05D000881 ORTHO05D000666 7.3e-08 62.4 95 29.5
Sed0020157 Sechium edule HOM05D000881 ORTHO05D000666 7.3e-08 62.4 94 33.0
Nn2g15728 Nelumbo nucifera HOM05D000881 ORTHO05D000666 9.6e-08 62.0 90 28.9
Hund06059 Selenicereus undatus HOM05D000881 ORTHO05D000666 9.6e-08 62.0 98 33.7
Zm00001eb218280 Zea mays HOM05D000881 ORTHO05D000666 9.6e-08 62.0 98 32.7
Prupe.5G186800 Prunus persica HOM05D000881 ORTHO05D000666 1.3e-07 61.6 122 27.0
ATR0697G043 Amborella trichopoda HOM05D000881 ORTHO05D000666 1.6e-07 61.2 97 33.0
Aqoxy2G03856 Aquilegia oxysepala HOM05D000881 ORTHO05D000666 1.6e-07 61.2 89 34.8
AUR62020187 Chenopodium quinoa HOM05D000881 ORTHO05D000666 1.6e-07 61.2 100 34.0
Glyma.08G230000 Glycine max HOM05D000881 ORTHO05D000666 1.6e-07 61.2 163 26.4
Glyma.14G045300 Glycine max HOM05D000881 ORTHO05D000666 1.6e-07 61.2 93 32.3
VMungo0251G0666 Vigna mungo HOM05D000907 ORTHO05D000753 1.6e-07 61.2 128 25.8
Zm00001eb052730 Zea mays HOM05D000881 ORTHO05D000666 1.6e-07 61.2 90 33.3
Actinidia32811 Actinidia chinensis HOM05D000881 ORTHO05D000666 2.1e-07 60.8 79 40.5
Rhsim01G0121400 Rhododendron simsii HOM05D000881 ORTHO05D000666 2.1e-07 60.8 123 29.3
CSS0037632 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 2.8e-07 60.5 141 29.8
CANSAT80G1763 Cannabis sativa HOM05D000881 ORTHO05D000666 2.8e-07 60.5 164 25.0
AUR62001593 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.8e-07 60.5 100 34.0
Gohir.D08G017600 Gossypium hirsutum HOM05D000881 ORTHO05D000666 2.8e-07 60.5 98 28.6
Gorai.004G012000 Gossypium raimondii HOM05D000881 ORTHO05D000666 2.8e-07 60.5 90 30.0
PGSC0003DMG400027497 Solanum tuberosum HOM05D000881 ORTHO05D000666 2.8e-07 60.5 90 35.6
TWI31G1146 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 2.8e-07 60.5 89 34.8
MD14G1195100 Malus domestica HOM05D000881 ORTHO05D000666 3.6e-07 60.1 113 28.3
Medtr4g107860 Medicago truncatula HOM05D000881 ORTHO05D000666 3.6e-07 60.1 106 32.1
Sed0007633 Sechium edule HOM05D000881 ORTHO05D000666 3.6e-07 60.1 88 31.8
Eucgr.J00308 Eucalyptus grandis HOM05D000881 ORTHO05D000666 4.8e-07 59.7 90 35.6
Potri.012G070100 Populus trichocarpa HOM05D000881 ORTHO05D000666 4.8e-07 59.7 119 29.4
Hund20971 Selenicereus undatus HOM05D000881 ORTHO05D000666 4.8e-07 59.7 93 33.3
Sc21g0006620 Simmondsia chinensis HOM05D000881 ORTHO05D000666 4.8e-07 59.7 92 32.6
HPP92_022920 Vanilla planifolia HOM05D000881 ORTHO05D000666 4.8e-07 59.7 96 27.1
HPP92_022932 Vanilla planifolia HOM05D000881 ORTHO05D000666 4.8e-07 59.7 96 27.1
arahy.Tifrunner.gnm1.ann1.PZF4SB Arachis hypogaea HOM05D000881 ORTHO05D000666 6.2e-07 59.3 104 31.7
Cc00_g06220 Coffea canephora HOM05D000881 ORTHO05D000666 6.2e-07 59.3 89 30.3
PSO591G0061 Papaver somniferum HOM05D000881 ORTHO05D000666 6.2e-07 59.3 90 36.7
PSO832G1594 Papaver somniferum HOM05D000881 ORTHO05D000666 6.2e-07 59.3 90 36.7
Solyc01g096960.3 Solanum lycopersicum HOM05D000881 ORTHO05D000666 6.2e-07 59.3 159 27.0
AUR62020188 Chenopodium quinoa HOM05D000881 ORTHO05D000666 8.1e-07 58.9 92 32.6
CiPaw.11G038800 Carya illinoinensis HOM05D000881 ORTHO05D000666 1.1e-06 58.5 94 31.9
ClCG03G014410 Citrullus lanatus HOM05D000881 ORTHO05D000666 1.1e-06 58.5 91 33.0
COL.COLO4_25323 Corchorus olitorius HOM05D000881 ORTHO05D000666 1.1e-06 58.5 93 36.6
CsaV3_1G041760 Cucumis sativus L. HOM05D000881 ORTHO05D000666 1.1e-06 58.5 138 26.1
Gohir.A12G175310 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.1e-06 58.5 76 35.5
PSO339G2895 Papaver somniferum HOM05D000881 ORTHO05D000666 1.1e-06 58.5 92 32.6
HanXRQChr16g0503171 Helianthus annuus HOM05D000881 ORTHO05D000666 1.4e-06 58.2 92 34.8
Lsat_1_v5_gn_7_14200 Lactuca sativa HOM05D000881 ORTHO05D000666 1.4e-06 58.2 98 29.6
LjContig00564g0002053 Lotus japonicus HOM05D000881 ORTHO05D000666 1.4e-06 58.2 97 26.8
MD11G1178700 Malus domestica HOM05D000881 ORTHO05D000666 1.4e-06 58.2 92 33.7
Potri.015G064800 Populus trichocarpa HOM05D000881 ORTHO05D000666 1.4e-06 58.2 102 32.4
SalBow6G6574 Salvia bowleyana HOM05D000125 ORTHO05D000120 1.4e-06 58.2 92 32.6
Sc04g0002460 Simmondsia chinensis HOM05D000881 ORTHO05D000666 1.4e-06 58.2 91 33.0
Sopen01g040680 Solanum pennellii HOM05D000881 ORTHO05D000666 1.4e-06 58.2 195 24.6
Migut.B01122 Erythranthe guttata HOM05D000881 ORTHO05D000666 1.8e-06 57.8 94 35.1
Gorai.012G022900 Gossypium raimondii HOM05D014341 ORTHO05D011752 1.8e-06 57.8 85 29.4
PGR142G2192 Punica granatum HOM05D000881 ORTHO05D000666 1.8e-06 57.8 91 33.0
VMungo0720G2887 Vigna mungo HOM05D000881 ORTHO05D000666 1.8e-06 57.8 97 34.0
Ciclev10018348m.g Citrus clementina HOM05D000881 ORTHO05D000666 2.4e-06 57.4 138 26.8
MELO3C015589.2 Cucumis melo HOM05D000881 ORTHO05D000666 2.4e-06 57.4 89 31.5
Potri.004G191000 Populus trichocarpa HOM05D000881 ORTHO05D000666 2.4e-06 57.4 97 27.8
GSVIVG01001930001 Vitis vinifera HOM05D000881 ORTHO05D000666 2.4e-06 57.4 90 31.1
Gohir.A08G007500 Gossypium hirsutum HOM05D000881 ORTHO05D000666 3.1e-06 57.0 71 33.8
HanXRQChr16g0503201 Helianthus annuus HOM05D000881 ORTHO05D000666 3.1e-06 57.0 92 33.7
Gohir.D12G178364 Gossypium hirsutum HOM05D000881 ORTHO05D000666 4.0e-06 56.6 76 34.2
HanXRQChr04g0102121 Helianthus annuus HOM05D000881 ORTHO05D000666 4.0e-06 56.6 89 34.8
MBI14_g12734_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 4.0e-06 56.6 90 31.1
Os05g0592000 Oryza sativa ssp. japonica HOM05D000881 ORTHO05D000666 4.0e-06 56.6 136 29.4
Phvul.008G209800 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 4.0e-06 56.6 156 26.3
SGA_v2.0_scaffold196G40977 Striga asiatica HOM05D000881 ORTHO05D000666 4.0e-06 56.6 168 29.2
Thecc.03G079700 Theobroma cacao HOM05D000881 ORTHO05D000666 5.3e-06 56.2 134 26.9
CiPaw.11G038700 Carya illinoinensis HOM05D000881 ORTHO05D000666 6.9e-06 55.8 90 27.8
HanXRQChr15g0470771 Helianthus annuus HOM05D000881 ORTHO05D000666 6.9e-06 55.8 180 33.3
Potri.009G153000 Populus trichocarpa HOM05D000881 ORTHO05D000666 6.9e-06 55.8 169 26.0
Sed0019713 Sechium edule HOM05D000881 ORTHO05D000666 6.9e-06 55.8 95 27.4
Atru.chr3.3015 Acer truncatum HOM05D000881 ORTHO05D000666 9.0e-06 55.5 95 33.7
CSS0047115 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 9.0e-06 55.5 90 30.0
Sopen01g040670 Solanum pennellii HOM05D000881 ORTHO05D000666 9.0e-06 55.5 152 27.0
TWI60G1130 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 9.0e-06 55.5 106 34.0


User provided reference genes

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