Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25498 Trifolium pratense HOM05D003880 ORTHO05D004959 3.2e-291 1004.6 587 100.0
Medtr3g005360 Medicago truncatula HOM05D003880 ORTHO05D004959 9.4e-227 790.4 601 80.2
Ca_13965_v3 Cicer arietinum L. HOM05D003880 ORTHO05D004959 4.1e-222 775.0 591 79.7
Psat1g000520 Pisum sativum HOM05D003880 ORTHO05D004959 1.1e-219 766.9 590 76.1
VMungo1080G1836 Vigna mungo HOM05D003880 ORTHO05D004959 5.0e-204 714.9 409 86.3
Lj3g0009516 Lotus japonicus HOM05D003880 ORTHO05D004959 1.1e-203 713.8 416 86.3
Lalb_Chr09g0332911 Lupinus albus HOM05D003880 ORTHO05D004959 1.5e-203 713.4 409 85.8
Phvul.005G000500 Phaseolus vulgaris HOM05D003880 ORTHO05D004959 1.9e-203 713.0 412 85.9
Lalb_Chr05g0224761 Lupinus albus HOM05D003880 ORTHO05D004959 3.2e-203 712.2 409 86.1
arahy.Tifrunner.gnm1.ann1.HC95SM Arachis hypogaea HOM05D003880 ORTHO05D004959 2.1e-202 709.5 414 85.5
arahy.Tifrunner.gnm1.ann1.9B0XDD Arachis hypogaea HOM05D003880 ORTHO05D004959 6.1e-202 708.0 414 85.3
Glyma.06G324700 Glycine max HOM05D003880 ORTHO05D004959 2.0e-197 693.0 412 84.2
Glyma.04G256800 Glycine max HOM05D003880 ORTHO05D004959 3.5e-197 692.2 413 84.5
Gohir.D09G112200 Gossypium hirsutum HOM05D003880 ORTHO05D004959 3.0e-193 679.1 411 80.5
Gorai.006G130000 Gossypium raimondii HOM05D003880 ORTHO05D004959 3.0e-193 679.1 411 80.5
Cfa008134 Carpinus fangiana HOM05D003880 ORTHO05D004959 1.5e-192 676.8 413 82.1
Thecc.08G186500 Theobroma cacao HOM05D003880 ORTHO05D004959 1.5e-192 676.8 411 80.8
QL09p004950 Quercus lobata HOM05D003880 ORTHO05D004959 2.0e-192 676.4 411 82.0
COL.COLO4_12797 Corchorus olitorius HOM05D003880 ORTHO05D004959 7.5e-192 674.5 411 81.0
Hma1.2p1_0004F.1_g004030 Hydrangea macrophylla HOM05D003880 ORTHO05D004959 1.3e-191 673.7 411 80.3
Dinv02585 Davidia involucrata HOM05D003880 ORTHO05D004959 4.9e-191 671.8 413 80.4
Actinidia23014 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.1e-190 670.6 412 80.8
Eucgr.F02584 Eucalyptus grandis HOM05D003880 ORTHO05D004959 1.4e-190 670.2 407 80.8
GSVIVG01012776001 Vitis vinifera HOM05D003880 ORTHO05D004959 1.8e-190 669.8 413 81.4
Duzib177G0936 Durio zibethinus HOM05D003880 ORTHO05D004959 3.1e-190 669.1 411 80.0
TWI14G0176 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 3.1e-190 669.1 408 82.4
TAR628G0517 Trochodendron aralioides HOM05D003880 ORTHO05D004959 5.4e-190 668.3 414 81.2
CiPaw.03G019400 Carya illinoinensis HOM05D003880 ORTHO05D004959 7.0e-190 667.9 411 81.8
CiPaw.04G012900 Carya illinoinensis HOM05D003880 ORTHO05D004959 1.2e-189 667.2 411 81.3
TWI59G0907 Tripterygium wilfordii HOM05D003880 ORTHO05D004959 1.6e-189 666.8 408 82.1
ClCG08G000380 Citrullus lanatus HOM05D003880 ORTHO05D004959 2.3e-188 662.9 410 80.0
Lj7A289G27 Lonicera japonica HOM05D003880 ORTHO05D004959 5.0e-188 661.8 412 79.6
Nn5g27605 Nelumbo nucifera HOM05D003880 ORTHO05D004959 2.5e-187 659.4 414 79.2
Duzib116G0170 Durio zibethinus HOM05D003880 ORTHO05D004959 7.2e-187 657.9 410 78.8
SalBow6G4536 Salvia bowleyana HOM05D003880 ORTHO05D004959 9.5e-187 657.5 403 78.7
SalBow6G5395 Salvia bowleyana HOM05D003880 ORTHO05D004959 9.5e-187 657.5 403 78.7
Actinidia02567 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.2e-186 657.1 412 79.4
Cpa.g.sc66.21 Carica papaya HOM05D003880 ORTHO05D004959 1.2e-186 657.1 409 79.5
Lj4A481T13 Lonicera japonica HOM05D003880 ORTHO05D004959 1.2e-186 657.1 413 79.9
Migut.N03362 Erythranthe guttata HOM05D003880 ORTHO05D004959 3.6e-186 655.6 404 79.5
MELO3C022212.2 Cucumis melo HOM05D003880 ORTHO05D004959 1.8e-185 653.3 410 79.5
Prupe.1G551200 Prunus persica HOM05D003880 ORTHO05D004959 1.8e-185 653.3 410 79.8
Peaxi162Scf00391g00533 Petunia axillaris HOM05D003880 ORTHO05D004959 2.3e-185 652.9 409 79.2
vmacro12476 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 4.0e-185 652.1 410 78.8
MD10G1100400 Malus domestica HOM05D003880 ORTHO05D004959 1.2e-184 650.6 410 78.5
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.2e-184 650.6 407 79.1
Aqoxy4G01178 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 2.0e-184 649.8 413 78.5
Zm00001eb348750 Zea mays HOM05D003880 ORTHO05D004959 2.0e-184 649.8 406 78.8
SGA_v2.0_scaffold24G10581 Striga asiatica HOM05D003880 ORTHO05D004959 2.6e-184 649.4 405 78.8
CsaV3_5G040400 Cucumis sativus L. HOM05D003880 ORTHO05D004959 3.4e-184 649.0 410 78.8
Cc00_g06530 Coffea canephora HOM05D003880 ORTHO05D004959 5.7e-184 648.3 411 78.3
Sopen11g010860 Solanum pennellii HOM05D003880 ORTHO05D004959 5.7e-184 648.3 408 78.7
MBI17_g21473_MAGBIO Magnolia biondii HOM05D003880 ORTHO05D004959 7.5e-184 647.9 408 77.7
PGSC0003DMG400009278 Solanum tuberosum HOM05D003880 ORTHO05D004959 7.5e-184 647.9 408 78.7
DCAR_001082 Daucus carota HOM05D003880 ORTHO05D004959 9.8e-184 647.5 409 77.8
Dinv41735 Davidia involucrata HOM05D003880 ORTHO05D004959 9.8e-184 647.5 376 84.0
Solyc11g020780.2 Solanum lycopersicum HOM05D003880 ORTHO05D004959 9.8e-184 647.5 408 78.2
CANSAT11G2580 Cannabis sativa HOM05D003880 ORTHO05D004959 1.3e-183 647.1 409 79.5
Migut.O00683 Erythranthe guttata HOM05D003880 ORTHO05D004959 1.7e-183 646.7 404 78.5
PGR042G0805 Punica granatum HOM05D003880 ORTHO05D004959 2.2e-183 646.4 409 78.7
Migut.C01288 Erythranthe guttata HOM05D003880 ORTHO05D004959 4.9e-183 645.2 408 78.2
PSO017G2071 Papaver somniferum HOM05D003880 ORTHO05D004959 8.3e-183 644.4 417 77.2
PSO063G4997 Papaver somniferum HOM05D003880 ORTHO05D004959 8.3e-183 644.4 417 77.2
Rhsim06G0088000 Rhododendron simsii HOM05D003880 ORTHO05D004959 8.3e-183 644.4 410 77.6
MSTRG.1545 Avicennia marina HOM05D003880 ORTHO05D004959 1.1e-182 644.0 404 79.0
THA.LOC104800120 Tarenaya hassleriana HOM05D003880 ORTHO05D004959 1.4e-182 643.7 412 78.9
MD05G1093300 Malus domestica HOM05D003880 ORTHO05D004959 1.8e-182 643.3 410 77.3
Os01g0874100 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 3.2e-182 642.5 404 79.2
Nitab4.5_0000167g0290 Nicotiana tabacum HOM05D003880 ORTHO05D004959 4.1e-182 642.1 409 78.5
SalBow7G4466 Salvia bowleyana HOM05D003880 ORTHO05D004959 7.0e-182 641.3 406 77.8
Sc23g0001360 Simmondsia chinensis HOM05D003880 ORTHO05D004959 9.2e-182 641.0 412 76.9
CDE04G1048 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.0e-181 639.8 408 77.2
CAN.G259.4 Capsicum annuum HOM05D003880 ORTHO05D004959 2.7e-181 639.4 407 78.6
Carub.0001s2216 Capsella rubella HOM05D003880 ORTHO05D004959 5.9e-181 638.3 410 77.3
Lsat_1_v5_gn_1_10140 Lactuca sativa HOM05D003880 ORTHO05D004959 5.9e-181 638.3 417 75.8
Manes.02G194600 Manihot esculenta HOM05D003880 ORTHO05D004959 5.9e-181 638.3 407 76.9
Atru.chr13.2392 Acer truncatum HOM05D003880 ORTHO05D004959 1.3e-180 637.1 409 78.2
SGA_v2.0_scaffold149G36569 Striga asiatica HOM05D003880 ORTHO05D004959 1.7e-180 636.7 408 77.0
Aqoxy7G03411 Aquilegia oxysepala HOM05D003880 ORTHO05D004959 8.6e-180 634.4 411 76.4
Os05g0430200 Oryza sativa ssp. japonica HOM05D003880 ORTHO05D004959 8.6e-180 634.4 407 77.4
vmacro00757 Vaccinium macrocarpon HOM05D003880 ORTHO05D004959 1.5e-179 633.6 408 76.5
HanXRQChr09g0260531 Helianthus annuus HOM05D003880 ORTHO05D004959 1.9e-179 633.3 411 77.4
CDE04G1100 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 2.5e-179 632.9 408 76.2
Sabra19G0093200 Salix brachista HOM05D003880 ORTHO05D004959 3.3e-179 632.5 407 77.4
Potri.019G081600 Populus trichocarpa HOM05D003880 ORTHO05D004959 4.3e-179 632.1 407 77.4
Zm00001eb146250 Zea mays HOM05D003880 ORTHO05D004959 4.3e-179 632.1 404 76.2
FvH4_5g32350 Fragaria vesca HOM05D003880 ORTHO05D004959 7.3e-179 631.3 410 76.8
Ciclev10000797m.g Citrus clementina HOM05D003880 ORTHO05D004959 2.8e-178 629.4 409 76.8
FAN13G2674 Fragaria x ananassa HOM05D003880 ORTHO05D004959 4.7e-178 628.6 411 77.1
ATR0661G349 Amborella trichopoda HOM05D003880 ORTHO05D004959 8.0e-178 627.9 421 74.3
FAN04G0842 Fragaria x ananassa HOM05D003880 ORTHO05D004959 8.0e-178 627.9 410 76.3
Sabra13G0094300 Salix brachista HOM05D003880 ORTHO05D004959 1.4e-177 627.1 408 77.7
Lsat_1_v5_gn_4_136101 Lactuca sativa HOM05D003880 ORTHO05D004959 2.3e-177 626.3 412 76.0
FAN08G3431 Fragaria x ananassa HOM05D003880 ORTHO05D004959 3.1e-177 625.9 410 76.1
Oeu025391.1 Olea europaea HOM05D003880 ORTHO05D004959 4.0e-177 625.5 408 76.2
Gohir.A09G115400 Gossypium hirsutum HOM05D003880 ORTHO05D004959 6.8e-177 624.8 411 76.2
Manes.18G103500 Manihot esculenta HOM05D003880 ORTHO05D004959 8.9e-177 624.4 407 76.2
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 1.5e-176 623.6 406 76.1
RcHm_v2.0_Chr7g0228851 Rosa chinensis HOM05D003880 ORTHO05D004959 2.6e-176 622.9 410 76.3
Actinidia05639 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.4e-176 622.5 375 82.7
unitig_747.g21476 Utricularia gibba HOM05D003880 ORTHO05D004959 3.4e-176 622.5 404 76.2
AUR62023520 Chenopodium quinoa HOM05D003880 ORTHO05D004959 5.8e-176 621.7 408 75.0
AUR62004625 Chenopodium quinoa HOM05D003880 ORTHO05D004959 1.3e-175 620.5 408 74.8
FAN18G3221 Fragaria x ananassa HOM05D003880 ORTHO05D004959 1.3e-175 620.5 427 73.8
Aa31LG4G10790 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.7e-175 619.0 408 75.0
ECA232G4758 Erigeron canadensis HOM05D003880 ORTHO05D004959 4.9e-175 618.6 413 74.8
HanXRQChr11g0326071 Helianthus annuus HOM05D003880 ORTHO05D004959 8.3e-175 617.8 410 76.6
Potri.013G109400 Populus trichocarpa HOM05D003880 ORTHO05D004959 8.3e-175 617.8 407 76.7
CARHR064840 Cardamine hirsuta HOM05D003880 ORTHO05D004959 3.2e-174 615.9 409 75.3
Hund16787 Selenicereus undatus HOM05D003880 ORTHO05D004959 5.4e-174 615.1 410 75.4
BcaB03g14926 Brassica carinata HOM05D003880 ORTHO05D004959 9.2e-174 614.4 408 75.2
Sp5g27110 Schrenkiella parvula HOM05D003880 ORTHO05D004959 1.6e-173 613.6 408 75.0
C06p46140 Brassica napus HOM05D003880 ORTHO05D004959 7.8e-173 611.3 408 74.8
BolC6t39667H Brassica oleracea HOM05D003880 ORTHO05D004959 7.8e-173 611.3 408 74.8
A02p17640 Brassica napus HOM05D003880 ORTHO05D004959 3.9e-172 609.0 409 75.3
BraA07t31387Z Brassica rapa HOM05D003880 ORTHO05D004959 3.9e-172 609.0 408 74.5
BcaB05g24701 Brassica carinata HOM05D003880 ORTHO05D004959 6.6e-172 608.2 408 74.8
BcaC08g46654 Brassica carinata HOM05D003880 ORTHO05D004959 6.6e-172 608.2 408 75.0
BcaC03g15327 Brassica carinata HOM05D003880 ORTHO05D004959 8.6e-172 607.8 409 75.1
C02p29320 Brassica napus HOM05D003880 ORTHO05D004959 8.6e-172 607.8 409 75.1
BolC2t08983H Brassica oleracea HOM05D003880 ORTHO05D004959 8.6e-172 607.8 409 75.1
BraA02t06810Z Brassica rapa HOM05D003880 ORTHO05D004959 1.5e-171 607.1 409 75.1
Thhalv10018309m.g Eutrema salsugineum HOM05D003880 ORTHO05D004959 1.5e-171 607.1 408 73.8
A07p38210 Brassica napus HOM05D003880 ORTHO05D004959 4.3e-171 605.5 408 74.3
unitig_0.g2129 Utricularia gibba HOM05D003880 ORTHO05D004959 5.6e-171 605.1 354 82.2
AL2G31670 Arabidopsis lyrata HOM05D003880 ORTHO05D004959 9.5e-171 604.4 405 74.3
AT1G72040 Arabidopsis thaliana HOM05D003880 ORTHO05D004959 3.6e-170 602.4 405 74.1
Carub.0002s1882 Capsella rubella HOM05D003880 ORTHO05D004959 6.2e-170 601.7 405 75.1
Sed0018926 Sechium edule HOM05D003880 ORTHO05D004959 1.4e-169 600.5 340 85.3
EL10Ac1g00108 Beta vulgaris HOM05D003880 ORTHO05D004959 4.4e-168 595.5 406 74.4
DCAR_011525 Daucus carota HOM05D003880 ORTHO05D004959 4.6e-165 585.5 461 65.5
CDE04G1975 Ceratophyllum demersum HOM05D003880 ORTHO05D004959 7.6e-160 568.2 366 75.7
Actinidia03514 Actinidia chinensis HOM05D003880 ORTHO05D004959 1.4e-158 563.9 362 78.7
Ah.05g178350 Amaranthus hybridus HOM05D003880 ORTHO05D004959 3.2e-158 562.8 405 69.6
Oeu004740.1 Olea europaea HOM05D003880 ORTHO05D004959 5.6e-155 552.0 321 84.4
SEGI_26933 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 1.4e-145 520.8 345 71.9
SHI35657 Sapria himalayana HOM05D003880 ORTHO05D004959 4.0e-145 519.2 391 66.5
Pp3c12_15090 Physcomitrium patens HOM05D003880 ORTHO05D004959 9.0e-145 518.1 391 66.2
Nitab4.5_0003010g0030 Nicotiana tabacum HOM05D003880 ORTHO05D004959 1.1e-142 511.1 375 70.4
Mapoly0028s0143 Marchantia polymorpha HOM05D003880 ORTHO05D004959 7.4e-139 498.4 389 66.1
SMO228G0044 Selaginella moellendorffii HOM05D003880 ORTHO05D004959 5.5e-134 482.3 381 66.1
SEGI_09673 Sequoiadendron giganteum HOM05D003880 ORTHO05D004959 3.5e-133 479.6 301 74.8
TAR624G0155 Trochodendron aralioides HOM05D003880 ORTHO05D004959 2.0e-128 463.8 377 65.3
PRCOL_00007080 Prasinoderma coloniale HOM05D003880 ORTHO05D004959 7.0e-97 359.0 384 51.3
BraA02t08014Z Brassica rapa HOM05D003880 ORTHO05D004959 1.7e-95 354.4 209 79.9
A02p29920 Brassica napus HOM05D003880 ORTHO05D004959 6.3e-90 335.9 197 80.2
FAN04G1012 Fragaria x ananassa HOM05D003880 ORTHO05D004959 2.0e-83 314.3 194 80.4
BcaNung01810 Brassica carinata HOM05D003880 ORTHO05D004959 1.2e-80 305.1 180 78.9
CSS0041582 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 8.8e-76 288.9 159 85.5
CSS0012164 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.5e-75 288.1 156 87.2
CSS0024003 Camellia sinensis var. sinensis HOM05D003880 ORTHO05D004959 1.5e-75 288.1 156 87.2
AagrBONN_evm.TU.Sc2ySwM_344.3442 Anthoceros agrestis HOM05D003880 ORTHO05D004959 1.3e-74 285.0 193 73.1
MCO01G353 Micromonas commoda HOM05D003880 ORTHO05D004959 1.5e-62 245.0 363 38.0
HPP92_019380 Vanilla planifolia HOM05D003880 ORTHO05D004959 4.7e-61 240.0 187 63.6
HPP92_027627 Vanilla planifolia HOM05D003880 ORTHO05D004959 6.8e-52 209.5 136 77.2
Cre02.g095350 Chlamydomonas reinhardtii HOM05D003880 ORTHO05D004959 5.4e-49 199.9 182 53.3
Pp3c15_5240 Physcomitrium patens HOM05D003880 ORTHO05D004959 1.5e-46 191.8 273 39.9
HPP92_019377 Vanilla planifolia HOM05D003880 ORTHO05D004959 1.6e-45 188.3 127 76.4
BolC5t31452H Brassica oleracea HOM05D003880 ORTHO05D004959 4.3e-38 163.7 109 73.4
BolC8t50393H Brassica oleracea HOM05D003880 ORTHO05D004959 7.3e-38 162.9 188 50.5
Pp3c4_20480 Physcomitrium patens HOM05D003880 ORTHO05D004959 3.4e-35 154.1 110 66.4
Mapoly0080s0005 Marchantia polymorpha HOM05D003880 ORTHO05D004959 1.2e-32 145.6 244 34.0
Actinidia18360 Actinidia chinensis HOM05D003880 ORTHO05D004959 3.3e-30 137.5 88 73.9
BcaB08g34411 Brassica carinata HOM05D003880 ORTHO05D004959 6.2e-29 133.3 152 51.3
BcaB05g25101 Brassica carinata HOM05D003880 ORTHO05D019999 6.9e-28 129.8 128 56.2
C08p27770 Brassica napus HOM05D003880 ORTHO05D004959 5.8e-27 126.7 83 69.9
BcaC07g39615 Brassica carinata HOM05D003880 ORTHO05D004959 3.8e-26 124.0 83 67.5
Oeu021226.1 Olea europaea HOM05D003880 ORTHO05D019999 6.0e-24 116.7 99 57.6
HPP92_027628 Vanilla planifolia HOM05D003880 ORTHO05D019999 2.0e-19 101.7 113 48.7
BcaB07g33153 Brassica carinata HOM05D003880 ORTHO05D019999 4.2e-17 94.0 98 52.0
PRCOL_00005076 Prasinoderma coloniale HOM05D003880 ORTHO05D333288 1.3e-15 89.0 175 36.6
BcaB02g09679 Brassica carinata HOM05D003880 ORTHO05D019999 1.3e-13 82.4 90 50.0
Lsat_1_v5_gn_1_10160 Lactuca sativa HOM05D003880 ORTHO05D019999 1.3e-10 72.4 37 89.2
CAN.G308.60 Capsicum annuum HOM05D003880 ORTHO05D000314 4.9e-10 70.5 111 39.6
Oeu004742.1 Olea europaea HOM05D003880 ORTHO05D004959 6.0e-08 63.5 35 82.9
COL.COLO4_03399 Corchorus olitorius HOM05D003880 ORTHO05D019999 1.5e-06 58.9 32 81.2


User provided reference genes

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