Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25497 Trifolium pratense HOM05D003427 ORTHO05D003927 7.8e-52 206.8 104 100.0
Medtr3g007470 Medicago truncatula HOM05D003427 ORTHO05D003927 1.9e-29 132.5 78 87.2
VMungo1309G2531 Vigna mungo HOM05D003427 ORTHO05D003927 3.8e-22 108.2 64 78.1
Phvul.009G122400 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 6.5e-22 107.5 76 67.1
Ca_14080_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 1.4e-21 106.3 60 85.0
Lj3g0027376 Lotus japonicus HOM05D003427 ORTHO05D003927 4.2e-21 104.8 75 72.0
Glyma.06G110500 Glycine max HOM05D003427 ORTHO05D003927 3.5e-20 101.7 66 71.2
Glyma.04G252000 Glycine max HOM05D003427 ORTHO05D003927 6.1e-20 100.9 75 64.0
Psat5g229600 Pisum sativum HOM05D003427 ORTHO05D003927 1.0e-19 100.1 78 69.2
Phvul.003G010800 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 1.8e-19 99.4 65 70.8
VMungo1215G1715 Vigna mungo HOM05D003427 ORTHO05D003927 3.9e-19 98.2 65 67.7
TWI12G1192 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 5.1e-19 97.8 79 63.3
Ca_15210_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 6.7e-19 97.4 76 67.1
Medtr3g072830 Medicago truncatula HOM05D003427 ORTHO05D003927 8.7e-19 97.1 74 64.9
CSS0043512 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.1e-18 96.7 76 67.1
CSS0048113 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.1e-18 96.7 76 67.1
FvH4_2g13600 Fragaria vesca HOM05D003427 ORTHO05D003927 5.7e-18 94.4 76 60.5
QL04p060321 Quercus lobata HOM05D003427 ORTHO05D003927 5.7e-18 94.4 76 61.8
Atru.chr13.1349 Acer truncatum HOM05D003427 ORTHO05D003927 9.7e-18 93.6 76 59.2
Atru.chr13.1391 Acer truncatum HOM05D003427 ORTHO05D003927 9.7e-18 93.6 76 59.2
Psat5g133440 Pisum sativum HOM05D003427 ORTHO05D003927 9.7e-18 93.6 60 75.0
QL07p045468 Quercus lobata HOM05D003427 ORTHO05D003927 9.7e-18 93.6 76 60.5
Rhsim06G0106600 Rhododendron simsii HOM05D003427 ORTHO05D003927 1.3e-17 93.2 65 70.8
Prupe.1G502900 Prunus persica HOM05D003427 ORTHO05D003927 1.6e-17 92.8 76 63.2
CSS0044236 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 2.2e-17 92.4 76 64.5
CANSAT56G1577 Cannabis sativa HOM05D003427 ORTHO05D003927 2.8e-17 92.0 75 61.3
TWI56G0570 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 3.7e-17 91.7 61 72.1
CANSAT56G1611 Cannabis sativa HOM05D003427 ORTHO05D003927 4.8e-17 91.3 75 61.3
FvH4_2g26430 Fragaria vesca HOM05D003427 ORTHO05D003927 4.8e-17 91.3 63 71.4
FAN24G2254 Fragaria x ananassa HOM05D003427 ORTHO05D003927 4.8e-17 91.3 63 71.4
Lalb_Chr23g0270941 Lupinus albus HOM05D003427 ORTHO05D003927 4.8e-17 91.3 75 58.7
arahy.Tifrunner.gnm1.ann1.81342Q Arachis hypogaea HOM05D003427 ORTHO05D003927 6.3e-17 90.9 65 61.5
arahy.Tifrunner.gnm1.ann1.X2WTDQ Arachis hypogaea HOM05D003427 ORTHO05D003927 6.3e-17 90.9 65 61.5
RcHm_v2.0_Chr6g0275211 Rosa chinensis HOM05D003427 ORTHO05D003927 6.3e-17 90.9 76 59.2
Lalb_Chr11g0065761 Lupinus albus HOM05D003427 ORTHO05D003927 8.2e-17 90.5 75 61.3
FAN15G0165 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.1e-16 90.1 61 72.1
FAN27G1027 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.1e-16 90.1 61 72.1
MD05G1028200 Malus domestica HOM05D003427 ORTHO05D003927 1.1e-16 90.1 72 63.9
EL10Ac7g18243 Beta vulgaris HOM05D003427 ORTHO05D003927 1.4e-16 89.7 60 70.0
Aqoxy1G02472 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 2.4e-16 89.0 66 66.7
Ciclev10001037m.g Citrus clementina HOM05D003427 ORTHO05D003927 2.4e-16 89.0 76 59.2
Eucgr.F04372 Eucalyptus grandis HOM05D003427 ORTHO05D003927 2.4e-16 89.0 76 59.2
MD15G1354500 Malus domestica HOM05D003427 ORTHO05D003927 2.4e-16 89.0 72 62.5
Dinv27352 Davidia involucrata HOM05D003427 ORTHO05D003927 3.1e-16 88.6 76 61.8
FAN15G0544 Fragaria x ananassa HOM05D003427 ORTHO05D003927 3.1e-16 88.6 54 75.9
FAN24G2318 Fragaria x ananassa HOM05D003427 ORTHO05D003927 3.1e-16 88.6 54 75.9
BraA04t18633Z Brassica rapa HOM05D003427 ORTHO05D003927 4.1e-16 88.2 67 67.2
Hund27042 Selenicereus undatus HOM05D003427 ORTHO05D003927 4.1e-16 88.2 60 70.0
Sc01g0001400 Simmondsia chinensis HOM05D003427 ORTHO05D003927 4.1e-16 88.2 61 68.9
Thecc.08G120400 Theobroma cacao HOM05D003427 ORTHO05D003927 4.1e-16 88.2 74 63.5
GSVIVG01008915001 Vitis vinifera HOM05D003427 ORTHO05D003927 4.1e-16 88.2 76 59.2
Hund16834 Selenicereus undatus HOM05D003427 ORTHO05D003927 5.3e-16 87.8 60 70.0
vmacro20081 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 5.3e-16 87.8 63 69.8
MELO3C003029.2 Cucumis melo HOM05D003427 ORTHO05D003927 6.9e-16 87.4 65 67.7
CiPaw.05G226400 Carya illinoinensis HOM05D003427 ORTHO05D003927 9.0e-16 87.0 76 61.8
Duzib116G0521 Durio zibethinus HOM05D003427 ORTHO05D003927 9.0e-16 87.0 76 61.8
Lj1g0010808 Lotus japonicus HOM05D003427 ORTHO05D003927 9.0e-16 87.0 75 60.0
RcHm_v2.0_Chr6g0295111 Rosa chinensis HOM05D003427 ORTHO05D003927 9.0e-16 87.0 60 70.0
TPR.G39483 Trifolium pratense HOM05D003427 ORTHO05D003927 9.0e-16 87.0 73 61.6
EL10Ac1g00015 Beta vulgaris HOM05D003427 ORTHO05D003927 1.2e-15 86.7 61 70.5
C04p69170 Brassica napus HOM05D003427 ORTHO05D003927 1.2e-15 86.7 67 65.7
TPR.G19881 Trifolium pratense HOM05D003427 ORTHO05D003927 1.2e-15 86.7 75 62.7
Cpa.g.sc36.19 Carica papaya HOM05D003427 ORTHO05D003927 1.5e-15 86.3 78 59.0
Hund16838 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.5e-15 86.3 82 61.0
BcaB06g29198 Brassica carinata HOM05D003427 ORTHO05D003927 2.6e-15 85.5 67 64.2
COL.COLO4_38335 Corchorus olitorius HOM05D003427 ORTHO05D003927 2.6e-15 85.5 65 63.1
PSO384G4155 Papaver somniferum HOM05D003427 ORTHO05D003927 2.6e-15 85.5 68 61.8
Sp4g23950 Schrenkiella parvula HOM05D003427 ORTHO05D003927 2.6e-15 85.5 60 68.3
BcaB06g29200 Brassica carinata HOM05D003427 ORTHO05D003927 3.4e-15 85.1 75 61.3
A04p31750 Brassica napus HOM05D003427 ORTHO05D003927 3.4e-15 85.1 54 75.9
BolC4t28415H Brassica oleracea HOM05D003427 ORTHO05D003927 3.4e-15 85.1 54 75.9
CsaV3_5G023150 Cucumis sativus L. HOM05D003427 ORTHO05D003927 3.4e-15 85.1 65 67.7
Actinidia23060 Actinidia chinensis HOM05D003427 ORTHO05D003927 1.0e-14 83.6 76 56.6
Haze_00493 Corylus avellana HOM05D003427 ORTHO05D003927 1.0e-14 83.6 76 60.5
vmacro05626 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 1.0e-14 83.6 76 59.2
Duzib093G1044 Durio zibethinus HOM05D003427 ORTHO05D003927 1.7e-14 82.8 65 66.2
Carub.0004s2398 Capsella rubella HOM05D003427 ORTHO05D003927 2.2e-14 82.4 73 57.5
ClCG03G009520 Citrullus lanatus HOM05D003427 ORTHO05D003927 2.2e-14 82.4 65 61.5
HPP92_012116 Vanilla planifolia HOM05D003427 ORTHO05D003927 2.2e-14 82.4 71 57.7
AL4G40010 Arabidopsis lyrata HOM05D003427 ORTHO05D003927 2.9e-14 82.0 61 63.9
A05p02420 Brassica napus HOM05D003427 ORTHO05D003927 2.9e-14 82.0 73 58.9
BraA05t19236Z Brassica rapa HOM05D003427 ORTHO05D003927 2.9e-14 82.0 73 58.9
Ah.05g172200 Amaranthus hybridus HOM05D003427 ORTHO05D003927 3.8e-14 81.6 61 65.6
AT2G41705 Arabidopsis thaliana HOM05D003427 ORTHO05D003927 5.0e-14 81.3 60 65.0
AUR62036406 Chenopodium quinoa HOM05D003427 ORTHO05D003927 5.0e-14 81.3 76 59.2
Gohir.A06G042200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 5.0e-14 81.3 61 63.9
THA.LOC104800187 Tarenaya hassleriana HOM05D003427 ORTHO05D003927 5.0e-14 81.3 63 61.9
TWI74G0994 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 5.0e-14 81.3 63 58.7
Aa31LG1G23720 Aethionema arabicum HOM05D003427 ORTHO05D003927 6.5e-14 80.9 76 55.3
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 6.5e-14 80.9 60 65.0
Potri.005G174600 Populus trichocarpa HOM05D003427 ORTHO05D003927 6.5e-14 80.9 78 55.1
TAR381G1219 Trochodendron aralioides HOM05D003427 ORTHO05D003927 6.5e-14 80.9 71 60.6
BcaC02g12787 Brassica carinata HOM05D003427 ORTHO05D003927 8.5e-14 80.5 73 57.5
C04p02870 Brassica napus HOM05D003427 ORTHO05D003927 8.5e-14 80.5 73 57.5
BolC4t21927H Brassica oleracea HOM05D003427 ORTHO05D003927 8.5e-14 80.5 73 57.5
Potri.002G086800 Populus trichocarpa HOM05D003427 ORTHO05D003927 8.5e-14 80.5 78 56.4
CARHR136800 Cardamine hirsuta HOM05D003427 ORTHO05D003927 1.4e-13 79.7 54 70.4
ECA246G0604 Erigeron canadensis HOM05D003427 ORTHO05D003927 1.4e-13 79.7 60 65.0
Medtr3g072840 Medicago truncatula HOM05D003427 ORTHO05D003927 1.4e-13 79.7 73 60.3
BcaNung06817 Brassica carinata HOM05D003427 ORTHO05D003927 1.9e-13 79.3 73 57.5
Os10g0567000 Oryza sativa ssp. japonica HOM05D003427 ORTHO05D003927 1.9e-13 79.3 65 66.2
Sed0011022 Sechium edule HOM05D003427 ORTHO05D003927 1.9e-13 79.3 61 63.9
TAR381G1345 Trochodendron aralioides HOM05D003427 ORTHO05D003927 2.5e-13 79.0 67 62.7
Gohir.D06G043200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 4.2e-13 78.2 75 58.7
Gorai.010G048400 Gossypium raimondii HOM05D003427 ORTHO05D003927 4.2e-13 78.2 75 58.7
Hma1.2p1_0009F.1_g006270 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 4.2e-13 78.2 54 72.2
Thhalv10016628m.g Eutrema salsugineum HOM05D003427 ORTHO05D003927 5.5e-13 77.8 60 63.3
Oeu050892.2 Olea europaea HOM05D003427 ORTHO05D003927 9.4e-13 77.0 76 53.9
CDE01G0736 Ceratophyllum demersum HOM05D003427 ORTHO05D003927 1.2e-12 76.6 86 48.8
MSTRG.1469 Avicennia marina HOM05D003427 ORTHO05D003927 4.6e-12 74.7 60 60.0
Migut.C01159 Erythranthe guttata HOM05D003427 ORTHO05D003927 6.1e-12 74.3 62 58.1
HanXRQChr17g0537311 Helianthus annuus HOM05D003427 ORTHO05D003927 1.4e-11 73.2 64 57.8
Lsat_1_v5_gn_3_20261 Lactuca sativa HOM05D003427 ORTHO05D003927 1.4e-11 73.2 60 58.3
Cc06_g13570 Coffea canephora HOM05D003427 ORTHO05D003927 3.0e-11 72.0 64 54.7
Zm00001eb390680 Zea mays HOM05D003427 ORTHO05D003927 5.1e-11 71.2 59 64.4
Solyc11g013120.2 Solanum lycopersicum HOM05D003427 ORTHO05D003927 2.0e-10 69.3 54 61.1
Sopen11g008180 Solanum pennellii HOM05D003427 ORTHO05D003927 2.0e-10 69.3 54 61.1
PGSC0003DMG400012073 Solanum tuberosum HOM05D003427 ORTHO05D003927 2.0e-10 69.3 54 61.1
MSTRG.25396 Avicennia marina HOM05D003427 ORTHO05D003927 2.5e-10 68.9 74 48.6
AagrBONN_evm.TU.Sc2ySwM_117.415 Anthoceros agrestis HOM05D003427 ORTHO05D003927 3.3e-10 68.6 70 51.4
SalBow7G0329 Salvia bowleyana HOM05D003427 ORTHO05D003927 3.3e-10 68.6 76 50.0
SalBow7G2208 Salvia bowleyana HOM05D003427 ORTHO05D003927 3.3e-10 68.6 76 50.0
CAN.G134.189 Capsicum annuum HOM05D003427 ORTHO05D003927 4.3e-10 68.2 73 50.7
SEGI_19823 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 7.4e-10 67.4 87 44.8
SEGI_25864 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 1.7e-09 66.2 51 58.8
SEGI_33607 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 2.2e-09 65.9 50 60.0
SGA_v2.0_scaffold52G18992 Striga asiatica HOM05D003427 ORTHO05D003927 2.2e-09 65.9 51 60.8
MD15G1354300 Malus domestica HOM05D003427 ORTHO05D003927 2.8e-09 65.5 44 72.7
SGA_v2.0_scaffold24G10480 Striga asiatica HOM05D003427 ORTHO05D003927 6.3e-09 64.3 50 62.0
Cfa015981 Carpinus fangiana HOM05D003427 ORTHO05D003927 1.1e-08 63.5 58 62.1
Nitab4.5_0005357g0010 Nicotiana tabacum HOM05D003427 ORTHO05D003927 1.1e-08 63.5 54 57.4
SEGI_06352 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 1.4e-08 63.2 52 55.8
SEGI_27083 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 3.1e-08 62.0 71 42.3
SEGI_02547 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 4.1e-08 61.6 52 51.9
Glyma.06G110450 Glycine max HOM05D003427 ORTHO05D003927 1.2e-07 60.1 41 70.7
Mapoly0005s0025 Marchantia polymorpha HOM05D003427 ORTHO05D003927 2.6e-07 58.9 67 47.8
MD08G1170500 Malus domestica HOM05D003427 ORTHO05D003927 6.5e-06 54.3 55 52.7
vmacro12550 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 6.5e-06 54.3 39 64.1
Pp3c27_680 Physcomitrium patens HOM05D003427 ORTHO05D003927 8.5e-06 53.9 74 43.2


User provided reference genes

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