Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25494 Trifolium pratense HOM05D000475 ORTHO05D011666 9.1e-209 729.9 354 100.0
TPR.G21356 Trifolium pratense HOM05D000475 ORTHO05D011666 9.5e-41 171.8 121 71.9
Lj2g0010150 Lotus japonicus HOM05D000475 ORTHO05D000343 2.6e-30 137.1 247 36.4
TPR.G4429 Trifolium pratense HOM05D000475 ORTHO05D000343 1.9e-28 131.0 92 68.5
TPR.G35832 Trifolium pratense HOM05D000475 ORTHO05D000343 3.2e-28 130.2 86 72.1
Medtr7g070320 Medicago truncatula HOM05D000475 ORTHO05D000343 2.5e-25 120.6 140 49.3
Psat3g124320 Pisum sativum HOM05D000475 ORTHO05D000343 2.5e-25 120.6 83 68.7
Solyc10g076330.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 7.3e-25 119.0 208 35.1
Ca_07698_v3 Cicer arietinum L. HOM05D000475 ORTHO05D000343 9.5e-25 118.6 116 55.2
TPR.G40566 Trifolium pratense HOM05D000475 ORTHO05D011666 6.2e-24 115.9 125 52.8
arahy.Tifrunner.gnm1.ann1.VSZX8Y Arachis hypogaea HOM05D000475 ORTHO05D000343 2.4e-23 114.0 114 52.6
Aqoxy3G02479 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 7.6e-22 109.0 108 50.9
Phvul.010G010600 Phaseolus vulgaris HOM05D000475 ORTHO05D011666 9.9e-22 108.6 75 66.7
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 1.3e-21 108.2 106 50.0
CAN.G629.5 Capsicum annuum HOM05D000475 ORTHO05D000343 2.2e-21 107.5 106 50.9
DCAR_018667 Daucus carota HOM05D000475 ORTHO05D000343 4.9e-21 106.3 133 41.4
Lalb_Chr07g0191001 Lupinus albus HOM05D000475 ORTHO05D011666 4.9e-21 106.3 212 33.0
Nitab4.5_0000047g0200 Nicotiana tabacum HOM05D000475 ORTHO05D000343 9.2e-20 102.1 150 39.3
QL05p049129 Quercus lobata HOM05D000475 ORTHO05D000343 1.6e-19 101.3 109 48.6
RcHm_v2.0_Chr3g0461581 Rosa chinensis HOM05D000475 ORTHO05D000343 2.7e-19 100.5 156 37.2
Peaxi162Scf00009g01231 Petunia axillaris HOM05D000475 ORTHO05D000343 6.0e-19 99.4 122 45.1
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 7.8e-19 99.0 105 47.6
Migut.L02045 Erythranthe guttata HOM05D000475 ORTHO05D000343 3.0e-18 97.1 115 44.3
Rhsim03G0110100 Rhododendron simsii HOM05D000475 ORTHO05D011666 1.1e-17 95.1 122 42.6
C09p74700 Brassica napus HOM05D000475 ORTHO05D000343 2.1e-16 90.9 107 42.1
BcaNung03297 Brassica carinata HOM05D000475 ORTHO05D000343 3.6e-16 90.1 107 41.1
BolC9t60202H Brassica oleracea HOM05D000475 ORTHO05D000343 3.6e-16 90.1 107 41.1
Sp6g40920 Schrenkiella parvula HOM05D000475 ORTHO05D000343 3.6e-16 90.1 107 41.1
CAN.G6.22 Capsicum annuum HOM05D000475 ORTHO05D011666 4.7e-16 89.7 110 40.9
Thhalv10012920m.g Eutrema salsugineum HOM05D000475 ORTHO05D000343 6.2e-16 89.4 112 40.2
A10p33760 Brassica napus HOM05D000475 ORTHO05D000343 8.1e-16 89.0 107 40.2
BraA10t45406Z Brassica rapa HOM05D000475 ORTHO05D000343 8.1e-16 89.0 107 40.2
Peaxi162Scf00284g00231 Petunia axillaris HOM05D000475 ORTHO05D000343 1.4e-15 88.2 142 35.9
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.8e-15 87.8 86 46.5
Peaxi162Scf00264g00858 Petunia axillaris HOM05D000001 ORTHO05D000003 5.3e-15 86.3 237 29.5
AT5G01660 Arabidopsis thaliana HOM05D000475 ORTHO05D000343 1.5e-14 84.7 119 36.1
COL.COLO4_24866 Corchorus olitorius HOM05D000475 ORTHO05D000343 2.0e-14 84.3 111 38.7
Lj4g0019173 Lotus japonicus HOM05D000475 ORTHO05D000343 2.0e-14 84.3 210 32.4
CAN.G149.44 Capsicum annuum HOM05D000475 ORTHO05D011666 2.6e-14 84.0 90 45.6
Lj1A962T107 Lonicera japonica HOM05D000475 ORTHO05D000343 4.4e-14 83.2 182 31.9
TPR.G8421 Trifolium pratense HOM05D000347 ORTHO05D011666 5.8e-14 82.8 58 69.0
Os01g0165200 Oryza sativa ssp. japonica HOM05D000475 ORTHO05D000343 1.3e-13 81.6 126 34.1
HanXRQChr14g0458941 Helianthus annuus HOM05D000475 ORTHO05D000343 1.7e-13 81.3 161 31.7
CDE07G1739 Ceratophyllum demersum HOM05D000475 ORTHO05D000343 2.9e-13 80.5 165 33.3
AL6G10390 Arabidopsis lyrata HOM05D000475 ORTHO05D000343 8.4e-13 79.0 110 36.4
CAN.G1225.6 Capsicum annuum HOM05D000475 ORTHO05D000343 8.4e-13 79.0 102 38.2
TWI38G2109 Tripterygium wilfordii HOM05D000475 ORTHO05D000343 2.4e-12 77.4 127 32.3
Glyma.01G126501 Glycine max HOM05D015228 ORTHO05D011666 5.4e-12 76.3 138 31.9
Nitab4.5_0001106g0120 Nicotiana tabacum HOM05D000475 ORTHO05D000343 9.3e-12 75.5 134 33.6
BcaC06g31981 Brassica carinata HOM05D000475 ORTHO05D000343 1.2e-11 75.1 131 34.4
Eucgr.G03101 Eucalyptus grandis HOM05D000475 ORTHO05D011666 3.5e-11 73.6 104 39.4
ECA238G4627 Erigeron canadensis HOM05D000475 ORTHO05D000343 6.0e-11 72.8 118 38.1
Solyc10g076340.3 Solanum lycopersicum HOM05D000475 ORTHO05D000343 1.0e-10 72.0 218 27.5
Haze_17294 Corylus avellana HOM05D000475 ORTHO05D000343 1.3e-10 71.6 199 29.1
Glyma.18G207500 Glycine max HOM05D000475 ORTHO05D000343 2.3e-10 70.9 52 73.1
Sopen10g027970 Solanum pennellii HOM05D000475 ORTHO05D000343 5.1e-10 69.7 174 29.9
TPR.G8213 Trifolium pratense HOM05D014746 ORTHO05D011720 8.7e-10 68.9 47 70.2
arahy.Tifrunner.gnm1.ann1.PI8N4R Arachis hypogaea HOM05D000475 ORTHO05D000343 4.3e-09 66.6 92 35.9
Sed0008589 Sechium edule HOM05D000475 ORTHO05D011666 7.3e-09 65.9 82 41.5
THA.LOC104816526 Tarenaya hassleriana HOM05D000475 ORTHO05D000343 9.6e-09 65.5 83 38.6
arahy.Tifrunner.gnm1.ann1.BL5G13 Arachis hypogaea HOM05D000475 ORTHO05D000343 1.3e-08 65.1 116 31.9
Thecc.05G006500 Theobroma cacao HOM05D000475 ORTHO05D000343 1.3e-08 65.1 48 58.3
CSS0035305 Camellia sinensis var. sinensis HOM05D000475 ORTHO05D011666 1.6e-08 64.7 112 34.8
CAN.G168.28 Capsicum annuum HOM05D007183 ORTHO05D008829 1.6e-08 64.7 182 24.2
Manes.16G023400 Manihot esculenta HOM05D007183 ORTHO05D008829 1.6e-08 64.7 190 25.3
SEGI_39821 Sequoiadendron giganteum HOM05D015546 ORTHO05D018311 2.8e-08 63.9 224 26.8
BcaC06g31955 Brassica carinata HOM05D000389 ORTHO05D000287 3.6e-08 63.5 80 41.2
Lj1g0000774 Lotus japonicus HOM05D000475 ORTHO05D000343 6.2e-08 62.8 51 62.7
PGSC0003DMG400011861 Solanum tuberosum HOM05D000475 ORTHO05D000343 1.1e-07 62.0 91 34.1
CDE02G0577 Ceratophyllum demersum HOM05D001337 ORTHO05D001281 1.8e-07 61.2 72 41.7
MELO3C033863.2 Cucumis melo HOM05D015228 ORTHO05D011666 3.1e-07 60.5 119 33.6
PSO675G2267 Papaver somniferum HOM05D007183 ORTHO05D008829 3.1e-07 60.5 153 28.8
Phvul.010G064000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 3.1e-07 60.5 120 30.8
Aqoxy1G01279 Aquilegia oxysepala HOM05D000475 ORTHO05D000343 5.3e-07 59.7 82 42.7
CARHR212020 Cardamine hirsuta HOM05D000475 ORTHO05D000343 5.3e-07 59.7 80 40.0
MD10G1300400 Malus domestica HOM05D007183 ORTHO05D008829 5.3e-07 59.7 161 24.8
CAN.G257.37 Capsicum annuum HOM05D000475 ORTHO05D011666 6.9e-07 59.3 46 54.3
Lalb_Chr03g0043501 Lupinus albus HOM05D000475 ORTHO05D000343 6.9e-07 59.3 52 61.5
Solyc09g015120.4 Solanum lycopersicum HOM05D000475 ORTHO05D000343 6.9e-07 59.3 49 59.2
PSO541G4014 Papaver somniferum HOM05D007183 ORTHO05D008829 9.0e-07 58.9 123 29.3
QL07p033892 Quercus lobata HOM05D000475 ORTHO05D000343 9.0e-07 58.9 52 53.8
CAN.G1288.8 Capsicum annuum HOM05D000475 ORTHO05D000343 1.5e-06 58.2 60 51.7
Sopen09g008410 Solanum pennellii HOM05D000475 ORTHO05D000343 1.5e-06 58.2 49 57.1
PGSC0003DMG400042494 Solanum tuberosum HOM05D007183 ORTHO05D008829 1.5e-06 58.2 130 26.2
Dinv12172 Davidia involucrata HOM05D000475 ORTHO05D014148 2.0e-06 57.8 51 58.8
Gohir.A03G158800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 3.4e-06 57.0 199 23.1
Rhsim09G0080000 Rhododendron simsii HOM05D000475 ORTHO05D000343 3.4e-06 57.0 50 56.0
ATR0580G133 Amborella trichopoda HOM05D000667 ORTHO05D004096 4.5e-06 56.6 86 32.6
VMungo1383G1412 Vigna mungo HOM05D000475 ORTHO05D000343 4.5e-06 56.6 45 62.2
Solyc06g050600.4 Solanum lycopersicum HOM05D000475 ORTHO05D011666 5.8e-06 56.2 56 44.6
Thecc.06G194600 Theobroma cacao HOM05D007183 ORTHO05D008829 5.8e-06 56.2 127 29.9
TWI63G1715 Tripterygium wilfordii HOM05D007183 ORTHO05D008829 5.8e-06 56.2 161 24.8
arahy.Tifrunner.gnm1.ann1.E8CB8M Arachis hypogaea HOM05D000475 ORTHO05D000343 9.9e-06 55.5 45 62.2
arahy.Tifrunner.gnm1.ann1.RFF9M1 Arachis hypogaea HOM05D000475 ORTHO05D000343 9.9e-06 55.5 45 62.2
HanXRQChr01g0007041 Helianthus annuus HOM05D000475 ORTHO05D000343 9.9e-06 55.5 56 50.0
Hma1.2p1_0191F.1_g083390 Hydrangea macrophylla HOM05D007183 ORTHO05D008829 9.9e-06 55.5 70 34.3
Phvul.008G092000 Phaseolus vulgaris HOM05D000475 ORTHO05D000343 9.9e-06 55.5 45 62.2
PGR042G2243 Punica granatum HOM05D007183 ORTHO05D008829 9.9e-06 55.5 161 26.1
Solyc10g008530.1 Solanum lycopersicum HOM05D007183 ORTHO05D008829 9.9e-06 55.5 128 25.8
PGSC0003DMG400011862 Solanum tuberosum HOM05D000475 ORTHO05D000343 9.9e-06 55.5 99 33.3


User provided reference genes

Program Settings