Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 2.6e-33 144.8 73 100.0
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 1.9e-28 128.6 73 82.2
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 4.7e-27 124.0 73 79.5
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 4.7e-27 124.0 73 87.7
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 6.1e-27 123.6 73 79.5
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 5.2e-26 120.6 73 84.9
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 6.8e-26 120.2 73 79.5
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 8.8e-26 119.8 73 78.1
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.2e-25 119.4 73 78.1
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 9.8e-25 116.3 71 81.7
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 6.3e-24 113.6 74 74.3
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 6.3e-24 113.6 74 74.3
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.3e-24 113.2 74 77.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 8.3e-24 113.2 73 72.6
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.1e-23 112.8 74 75.7
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.4e-23 112.5 73 72.6
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.4e-23 112.5 74 74.3
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-23 112.5 74 74.3
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.4e-23 111.7 74 74.3
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.4e-23 111.7 73 71.2
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.4e-23 111.7 73 71.2
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 3.1e-23 111.3 73 71.2
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 4.1e-23 110.9 73 72.6
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 4.1e-23 110.9 74 74.3
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 4.1e-23 110.9 74 73.0
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 5.4e-23 110.5 74 73.0
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 5.4e-23 110.5 73 71.2
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 7.0e-23 110.2 73 72.6
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 7.0e-23 110.2 73 67.1
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.2e-22 109.4 75 72.0
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.0e-22 108.6 73 69.9
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.0e-22 108.6 73 69.9
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 71.2
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 71.2
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.7e-22 108.2 74 71.6
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 3.5e-22 107.8 73 68.5
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 5.9e-22 107.1 75 76.0
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 5.9e-22 107.1 75 73.3
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 7.7e-22 106.7 74 73.0
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.3e-21 105.1 75 73.3
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 3.8e-21 104.4 72 75.0
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 6.6e-21 103.6 75 66.7
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 8.6e-21 103.2 71 69.0
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 8.6e-21 103.2 73 69.9
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 8.6e-21 103.2 74 70.3
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 8.6e-21 103.2 73 68.5
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.9e-20 102.1 73 68.5
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 4.2e-20 100.9 73 67.1
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 5.5e-20 100.5 74 67.6
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 9.5e-20 99.8 74 68.9
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 9.5e-20 99.8 73 67.1
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 1.6e-19 99.0 73 67.1
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.6e-19 99.0 74 64.9
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.1e-19 97.1 76 60.5
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 8.0e-19 96.7 73 58.9
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 8.0e-19 96.7 71 66.2
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 8.0e-19 96.7 79 63.3
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 8.0e-19 96.7 79 63.3
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.8e-18 95.5 75 68.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 2.3e-18 95.1 79 68.4
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.3e-18 95.1 73 63.0
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.0e-18 94.4 79 68.4
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 5.2e-18 94.0 78 64.1
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.2e-18 94.0 78 61.5
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 5.2e-18 94.0 75 62.7
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 8.9e-18 93.2 75 62.7
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 8.9e-18 93.2 75 62.7
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.2e-17 92.8 73 63.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-17 92.8 78 60.3
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.2e-17 92.8 78 60.3
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.2e-17 92.8 78 60.3
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.2e-17 92.8 79 60.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.2e-17 92.8 80 58.8
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.5e-17 92.4 78 62.8
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.0e-17 92.0 71 63.4
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.0e-17 92.0 61 68.9
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.0e-17 92.0 78 61.5
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.0e-17 92.0 78 61.5
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.6e-17 91.7 78 61.5
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.6e-17 91.7 75 66.7
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 4.4e-17 90.9 75 60.0
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 5.7e-17 90.5 71 59.2
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 5.7e-17 90.5 75 60.0
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 5.7e-17 90.5 68 64.7
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 7.5e-17 90.1 61 70.5
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.5e-17 90.1 81 60.5
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 7.5e-17 90.1 79 63.3
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 9.8e-17 89.7 72 63.9
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 64.7
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 2.2e-16 88.6 80 57.5
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.2e-16 88.6 64 68.8
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 3.7e-16 87.8 68 63.2
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 3.7e-16 87.8 79 60.8
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 4.9e-16 87.4 73 60.3
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 4.9e-16 87.4 55 72.7
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 8.3e-16 86.7 68 63.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 8.3e-16 86.7 80 52.5
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 1.1e-15 86.3 59 67.8
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-15 85.9 68 61.8
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.4e-15 85.9 68 61.8
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.4e-15 85.9 65 61.5
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.8e-15 85.5 79 54.4
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.4e-15 85.1 73 57.5
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.4e-15 85.1 75 57.3
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 4.1e-15 84.3 68 60.3
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 4.1e-15 84.3 70 64.3
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 1.2e-14 82.8 62 61.3
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.6e-14 82.4 64 60.9
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 2.0e-14 82.0 80 57.5
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 3.5e-14 81.3 62 61.3
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 4.6e-14 80.9 62 61.3
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.6e-14 80.9 78 53.8
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.0e-13 79.7 64 57.8
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.0e-13 79.7 76 56.6
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 2.9e-13 78.2 75 54.7
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.9e-13 78.2 66 56.1
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 3.9e-13 77.8 64 64.1
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 3.9e-13 77.8 45 75.6
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 5.0e-13 77.4 72 56.9
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 6.6e-13 77.0 57 61.4
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 8.6e-13 76.6 45 73.3
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 8.6e-13 76.6 50 70.0
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.1e-12 76.3 54 61.1
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.5e-12 75.9 72 56.9
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.5e-12 75.9 77 55.8
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.9e-12 75.5 64 51.6
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 2.5e-12 75.1 79 53.2
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.5e-12 75.1 69 52.2
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.3e-12 74.3 46 67.4
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 5.6e-12 73.9 74 52.7
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 7.3e-12 73.6 44 75.0
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 9.5e-12 73.2 59 61.0
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.2e-11 72.8 56 66.1
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 2.1e-11 72.0 46 63.0
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.1e-11 72.0 58 62.1
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 6.1e-11 70.5 73 50.7
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 6.1e-11 70.5 75 52.0
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 6.1e-11 70.5 75 45.3
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 8.0e-11 70.1 75 50.7
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 8.0e-11 70.1 75 50.7
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 8.0e-11 70.1 75 50.7
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 8.0e-11 70.1 75 50.7
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 8.0e-11 70.1 75 50.7
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.0e-10 69.7 53 60.4
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.8e-10 68.9 72 50.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.8e-10 68.9 44 59.1
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.2e-08 62.0 35 80.0


User provided reference genes

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