Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25400 Trifolium pratense HOM05D001578 ORTHO05D001207 1.0e-31 139.4 69 100.0
TPR.G25397 Trifolium pratense HOM05D001578 ORTHO05D001207 1.7e-23 112.1 63 90.5
Medtr4g122800 Medicago truncatula HOM05D001578 ORTHO05D001207 5.1e-23 110.5 63 88.9
Psat0s2823g0080 Pisum sativum HOM05D001578 ORTHO05D001207 1.2e-21 105.9 63 85.7
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.1e-21 105.1 63 82.5
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 3.1e-20 101.3 63 79.4
Lj4g0019348 Lotus japonicus HOM05D001578 ORTHO05D001207 9.9e-19 96.3 59 81.4
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 1.7e-18 95.5 65 76.9
Glyma.07G237300 Glycine max HOM05D001578 ORTHO05D001207 2.2e-18 95.1 64 76.6
Phvul.003G117200 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.8e-18 94.4 63 74.6
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 6.4e-18 93.6 63 74.6
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.9e-17 92.0 68 70.6
Phvul.003G117100 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 4.6e-16 87.4 63 71.4
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 6.0e-16 87.0 63 71.4
Lalb_Chr07g0181931 Lupinus albus HOM05D001578 ORTHO05D001207 7.8e-16 86.7 64 71.9
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 2.3e-15 85.1 63 69.8
VMungo1215G1199 Vigna mungo HOM05D001578 ORTHO05D001207 2.3e-15 85.1 63 69.8
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 5.1e-15 84.0 63 68.3
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 6.6e-15 83.6 63 68.3
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 1.1e-14 82.8 64 67.2
Lalb_Chr20g0117771 Lupinus albus HOM05D001578 ORTHO05D001207 1.1e-14 82.8 66 66.7
TPR.G25407 Trifolium pratense HOM05D001578 ORTHO05D001207 1.1e-14 82.8 63 63.5
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.9e-14 82.0 63 63.5
Medtr4g122760 Medicago truncatula HOM05D001578 ORTHO05D001207 1.9e-14 82.0 66 60.6
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 2.5e-14 81.6 63 66.7
Psat0s4829g0040 Pisum sativum HOM05D001578 ORTHO05D001207 5.6e-14 80.5 63 66.7
TPR.G25401 Trifolium pratense HOM05D001578 ORTHO05D001207 5.6e-14 80.5 68 63.2
Lalb_Chr12g0200781 Lupinus albus HOM05D001578 ORTHO05D001207 9.6e-14 79.7 63 65.1
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 3.6e-13 77.8 63 63.5
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 3.6e-13 77.8 63 63.5
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 3.6e-13 77.8 63 63.5
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 6.2e-13 77.0 63 58.7
Ca_21411_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 5.3e-12 73.9 62 56.5
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 5.3e-12 73.9 63 57.1
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 5.3e-12 73.9 64 64.1
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 1.5e-11 72.4 64 60.9
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 1.5e-11 72.4 64 60.9
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 2.0e-11 72.0 63 60.3
CANSAT78G2386 Cannabis sativa HOM05D001578 ORTHO05D001207 3.4e-11 71.2 64 57.8
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 4.5e-11 70.9 65 58.5
Prupe.1G114500 Prunus persica HOM05D001578 ORTHO05D001207 5.8e-11 70.5 64 53.1
BcaC08g42990 Brassica carinata HOM05D001578 ORTHO05D001207 7.6e-11 70.1 63 58.7
C06p02320 Brassica napus HOM05D001578 ORTHO05D001207 7.6e-11 70.1 63 58.7
BolC6t35358H Brassica oleracea HOM05D001578 ORTHO05D001207 7.6e-11 70.1 63 58.7
BcaB07g33804 Brassica carinata HOM05D001578 ORTHO05D001207 9.9e-11 69.7 63 57.1
Medtr4g007280 Medicago truncatula HOM05D001578 ORTHO05D001207 1.3e-10 69.3 63 58.7
Cpa.g.sc9.25 Carica papaya HOM05D001578 ORTHO05D001207 1.7e-10 68.9 63 55.6
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 1.7e-10 68.9 63 60.3
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 1.7e-10 68.9 63 55.6
Psat0s740g0160 Pisum sativum HOM05D001578 ORTHO05D001207 1.7e-10 68.9 63 50.8
Psat4g021360 Pisum sativum HOM05D001578 ORTHO05D001207 2.2e-10 68.6 61 59.0
A06p04790 Brassica napus HOM05D001578 ORTHO05D001207 2.9e-10 68.2 63 57.1
CARHR037580 Cardamine hirsuta HOM05D001578 ORTHO05D001207 2.9e-10 68.2 63 55.6
Dinv18323 Davidia involucrata HOM05D000034 ORTHO05D000277 3.8e-10 67.8 70 50.0
AL1G54460 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 4.9e-10 67.4 63 55.6
BraA06t23683Z Brassica rapa HOM05D001578 ORTHO05D001207 6.4e-10 67.0 63 55.6
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 6.4e-10 67.0 67 55.2
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 8.4e-10 66.6 62 54.8
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 1.1e-09 66.2 64 51.6
FAN07G2152 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.1e-09 66.2 63 55.6
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 1.4e-09 65.9 61 49.2
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 1.9e-09 65.5 50 62.0
Aa31LG10G5830 Aethionema arabicum HOM05D001578 ORTHO05D001207 2.4e-09 65.1 59 57.6
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 2.4e-09 65.1 67 53.7
FvH4_4g20440 Fragaria vesca HOM05D001578 ORTHO05D001207 3.2e-09 64.7 63 55.6
FAN12G2021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 3.2e-09 64.7 63 55.6
MD16G1150600 Malus domestica HOM05D001578 ORTHO05D001207 3.2e-09 64.7 59 50.8
Carub.0001s3704 Capsella rubella HOM05D001578 ORTHO05D001207 4.2e-09 64.3 63 54.0
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 5.4e-09 63.9 65 56.9
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 7.1e-09 63.5 63 47.6
Manes.15G098100 Manihot esculenta HOM05D001578 ORTHO05D001207 7.1e-09 63.5 63 52.4
Glyma.20G029200 Glycine max HOM05D001578 ORTHO05D001207 9.3e-09 63.2 63 55.6
Glyma.20G029500 Glycine max HOM05D001578 ORTHO05D001207 9.3e-09 63.2 63 55.6
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 1.2e-08 62.8 62 51.6
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 1.2e-08 62.8 62 48.4
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 1.6e-08 62.4 63 52.4
Glyma.20G029000 Glycine max HOM05D001578 ORTHO05D001207 1.6e-08 62.4 63 55.6
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 2.7e-08 61.6 63 52.4
QL06p012837 Quercus lobata HOM05D001578 ORTHO05D001207 2.7e-08 61.6 62 50.0
PGSC0003DMG400004618 Solanum tuberosum HOM05D001578 ORTHO05D001207 2.7e-08 61.6 64 53.1
CAN.G484.68 Capsicum annuum HOM05D001578 ORTHO05D001207 3.5e-08 61.2 67 53.7
Glyma.20G028700 Glycine max HOM05D001578 ORTHO05D001207 3.5e-08 61.2 63 54.0
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 3.5e-08 61.2 62 51.6
TWI53G0804 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 3.5e-08 61.2 63 55.6
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 4.6e-08 60.8 63 49.2
AT1G47960 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 1.0e-07 59.7 57 50.9
Glyma.20G028900 Glycine max HOM05D001578 ORTHO05D001207 1.0e-07 59.7 63 52.4
Thecc.04G305000 Theobroma cacao HOM05D001578 ORTHO05D001207 1.0e-07 59.7 65 49.2
Lalb_Chr12g0200771 Lupinus albus HOM05D001578 ORTHO05D001207 1.3e-07 59.3 61 55.7
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.8e-07 58.9 57 54.4
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.3e-07 58.5 57 54.4
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 2.3e-07 58.5 57 54.4
Nitab4.5_0002150g0080 Nicotiana tabacum HOM05D001578 ORTHO05D001207 2.3e-07 58.5 64 53.1
TWI75G0074 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 2.3e-07 58.5 62 48.4
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 3.9e-07 57.8 65 47.7
CiPaw.01G135800 Carya illinoinensis HOM05D001578 ORTHO05D001207 5.1e-07 57.4 50 56.0
Lj6g0013229 Lotus japonicus HOM05D001578 ORTHO05D001207 5.1e-07 57.4 54 57.4
Lj3P834T42 Lonicera japonica HOM05D001578 ORTHO05D001207 6.7e-07 57.0 64 51.6
Lj3P834T43 Lonicera japonica HOM05D001578 ORTHO05D001207 6.7e-07 57.0 64 53.1
MSTRG.16314 Avicennia marina HOM05D001578 ORTHO05D001207 8.7e-07 56.6 65 49.2
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 8.7e-07 56.6 65 47.7
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.1e-06 56.2 63 49.2
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 1.1e-06 56.2 63 44.4
FvH4_6g33790 Fragaria vesca HOM05D001578 ORTHO05D001207 1.5e-06 55.8 61 52.5
FAN02G2223 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.5e-06 55.8 61 50.8
Gohir.A10G174100 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.5e-06 55.8 65 49.2
Gohir.D10G180700 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.5e-06 55.8 65 49.2
Gorai.011G202200 Gossypium raimondii HOM05D001578 ORTHO05D001207 1.5e-06 55.8 65 49.2
Peaxi162Scf01160g00142 Petunia axillaris HOM05D001578 ORTHO05D001207 1.5e-06 55.8 64 51.6
Prupe.5G112600 Prunus persica HOM05D001578 ORTHO05D001207 1.5e-06 55.8 63 46.0
Sopen12g033890 Solanum pennellii HOM05D001578 ORTHO05D001207 1.5e-06 55.8 64 50.0
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 1.9e-06 55.5 65 50.8
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 1.9e-06 55.5 66 48.5
Sopen12g033880 Solanum pennellii HOM05D001578 ORTHO05D001207 2.5e-06 55.1 67 49.3
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 2.5e-06 55.1 64 48.4
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 3.3e-06 54.7 66 50.0
Psat0s2818g0040 Pisum sativum HOM05D001578 ORTHO05D001207 4.3e-06 54.3 63 46.0
arahy.Tifrunner.gnm1.ann1.T9CDYU Arachis hypogaea HOM05D001578 ORTHO05D001207 5.6e-06 53.9 61 42.6
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 5.6e-06 53.9 64 46.9
RcHm_v2.0_Chr4g0399701 Rosa chinensis HOM05D001578 ORTHO05D001207 5.6e-06 53.9 58 50.0
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 7.4e-06 53.5 63 47.6
HanXRQChr13g0395201 Helianthus annuus HOM05D001578 ORTHO05D001207 7.4e-06 53.5 66 50.0
Nitab4.5_0000651g0280 Nicotiana tabacum HOM05D001578 ORTHO05D001207 7.4e-06 53.5 63 47.6
FvH4_1g05890 Fragaria vesca HOM05D001578 ORTHO05D001207 9.6e-06 53.1 61 42.6


User provided reference genes

Program Settings