Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25386 Trifolium pratense HOM05D005195 ORTHO05D006088 8.4e-179 630.2 306 100.0
Medtr2g044900 Medicago truncatula HOM05D005195 ORTHO05D006088 6.3e-150 534.3 306 86.6
Psat1g139120 Pisum sativum HOM05D005195 ORTHO05D006088 5.9e-132 474.6 311 77.2
Lj6g0001650 Lotus japonicus HOM05D005195 ORTHO05D006088 1.3e-126 456.8 320 73.8
Glyma.09G077400 Glycine max HOM05D005195 ORTHO05D006088 5.4e-125 451.4 322 73.0
Phvul.009G221900 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 1.0e-120 437.2 322 72.0
VMungo1309G1826 Vigna mungo HOM05D005195 ORTHO05D006088 1.1e-117 427.2 322 69.9
Glyma.17G044200 Glycine max HOM05D005195 ORTHO05D006088 5.4e-117 424.9 341 66.0
VMungo1215G2768 Vigna mungo HOM05D005195 ORTHO05D006088 5.4e-117 424.9 340 67.9
Glyma.13G115600 Glycine max HOM05D005195 ORTHO05D006088 1.0e-115 420.6 341 66.3
Phvul.003G126200 Phaseolus vulgaris HOM05D005195 ORTHO05D006088 8.6e-115 417.5 340 66.5
Lj4g0025754 Lotus japonicus HOM05D005195 ORTHO05D006088 1.5e-111 406.8 338 65.4
Lalb_Chr07g0181481 Lupinus albus HOM05D005195 ORTHO05D006088 3.4e-111 405.6 340 64.7
arahy.Tifrunner.gnm1.ann1.EYB30S Arachis hypogaea HOM05D005195 ORTHO05D006088 1.4e-109 400.2 338 63.3
Psat4g019920 Pisum sativum HOM05D005195 ORTHO05D006088 3.2e-109 399.1 315 67.0
arahy.Tifrunner.gnm1.ann1.QID06X Arachis hypogaea HOM05D005195 ORTHO05D006088 5.1e-107 391.7 338 62.7
Lalb_Chr12g0200391 Lupinus albus HOM05D005195 ORTHO05D006088 4.3e-106 388.7 339 61.1
Medtr4g124450 Medicago truncatula HOM05D005195 ORTHO05D006088 4.3e-106 388.7 315 66.3
Ca_21349_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 2.1e-105 386.3 310 64.8
TPR.G12689 Trifolium pratense HOM05D005195 ORTHO05D006088 2.3e-104 382.9 314 66.2
Lalb_Chr13g0299131 Lupinus albus HOM05D005195 ORTHO05D006088 7.5e-103 377.9 335 62.4
TWI34G1666 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 8.3e-102 374.4 294 65.3
TWI63G0336 Tripterygium wilfordii HOM05D005195 ORTHO05D006088 7.8e-100 367.9 276 67.0
Ciclev10008817m.g Citrus clementina HOM05D005195 ORTHO05D006088 5.1e-99 365.2 307 62.5
Atru.chr7.1799 Acer truncatum HOM05D005195 ORTHO05D006088 8.6e-99 364.4 279 66.7
Haze_26081 Corylus avellana HOM05D005195 ORTHO05D006088 4.3e-98 362.1 264 67.8
Nn6g35744 Nelumbo nucifera HOM05D005195 ORTHO05D006088 5.6e-98 361.7 241 72.2
Thecc.09G067900 Theobroma cacao HOM05D005195 ORTHO05D006088 5.6e-98 361.7 283 66.1
CiPaw.03G199200 Carya illinoinensis HOM05D005195 ORTHO05D006088 7.3e-98 361.3 291 63.6
Dinv25492 Davidia involucrata HOM05D005195 ORTHO05D006088 1.2e-97 360.5 210 81.0
CSS0045452 Camellia sinensis var. sinensis HOM05D005195 ORTHO05D006088 2.1e-97 359.8 242 73.1
Cfa002928 Carpinus fangiana HOM05D005195 ORTHO05D006088 2.1e-97 359.8 240 71.7
TAR383G0985 Trochodendron aralioides HOM05D005195 ORTHO05D006088 2.8e-97 359.4 280 65.7
GSVIVG01014997001 Vitis vinifera HOM05D005195 ORTHO05D006088 4.7e-97 358.6 321 59.2
Cc00_g13790 Coffea canephora HOM05D005195 ORTHO05D006088 6.2e-97 358.2 216 78.2
PSO421G0417 Papaver somniferum HOM05D005195 ORTHO05D006088 8.1e-97 357.8 208 79.8
Eucgr.C00758 Eucalyptus grandis HOM05D005195 ORTHO05D006088 3.1e-96 355.9 275 63.3
PGR142G1085 Punica granatum HOM05D005195 ORTHO05D006088 4.0e-96 355.5 271 66.4
ClCG03G014710 Citrullus lanatus HOM05D005195 ORTHO05D006088 5.2e-96 355.1 285 63.9
Duzib150G0538 Durio zibethinus HOM05D005195 ORTHO05D006088 6.8e-96 354.8 210 78.6
Hund08917 Selenicereus undatus HOM05D005195 ORTHO05D006088 1.2e-95 354.0 321 58.6
CANSAT56G1537 Cannabis sativa HOM05D005195 ORTHO05D006088 2.0e-95 353.2 220 76.8
Gohir.A06G082100 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.6e-95 352.8 225 73.3
Gorai.010G094600 Gossypium raimondii HOM05D005195 ORTHO05D006088 4.4e-95 352.1 283 62.5
Gohir.D06G081300 Gossypium hirsutum HOM05D005195 ORTHO05D006088 5.8e-95 351.7 283 62.2
QL11p003443 Quercus lobata HOM05D005195 ORTHO05D006088 7.6e-95 351.3 210 80.0
Aqoxy7G00925 Aquilegia oxysepala HOM05D005195 ORTHO05D006088 9.9e-95 350.9 279 65.2
Prupe.7G189700 Prunus persica HOM05D005195 ORTHO05D006088 9.9e-95 350.9 208 80.3
Manes.16G088800 Manihot esculenta HOM05D005195 ORTHO05D006088 1.3e-94 350.5 222 73.9
CsaV3_1G041450 Cucumis sativus L. HOM05D005195 ORTHO05D006088 1.7e-94 350.1 284 62.3
MELO3C015557.2 Cucumis melo HOM05D005195 ORTHO05D006088 1.4e-93 347.1 285 62.1
ATR0099G089 Amborella trichopoda HOM05D005195 ORTHO05D006088 4.2e-93 345.5 315 59.0
Lj7A694G45 Lonicera japonica HOM05D005195 ORTHO05D006088 5.4e-93 345.1 202 81.7
Actinidia39605 Actinidia chinensis HOM05D005195 ORTHO05D006088 1.6e-92 343.6 205 79.0
MSTRG.26504 Avicennia marina HOM05D005195 ORTHO05D006088 2.7e-92 342.8 210 77.6
Duzib168G1130 Durio zibethinus HOM05D005195 ORTHO05D006088 2.7e-92 342.8 208 76.4
Oeu010853.1 Olea europaea HOM05D005195 ORTHO05D006088 2.7e-92 342.8 206 78.6
Oeu010852.1 Olea europaea HOM05D005195 ORTHO05D006088 3.5e-92 342.4 206 78.2
SalBow6G3026 Salvia bowleyana HOM05D005195 ORTHO05D006088 3.5e-92 342.4 209 78.0
MD15G1225300 Malus domestica HOM05D005195 ORTHO05D006088 6.0e-92 341.7 207 77.8
Cpa.g.sc82.43 Carica papaya HOM05D005195 ORTHO05D006088 7.8e-92 341.3 283 61.1
Sabra06G0166900 Salix brachista HOM05D005195 ORTHO05D006088 1.0e-91 340.9 210 75.7
Sed0003985 Sechium edule HOM05D005195 ORTHO05D006088 1.0e-91 340.9 289 60.9
EL10Ac8g18946 Beta vulgaris HOM05D005195 ORTHO05D006088 1.3e-91 340.5 203 77.8
Duzib187G0988 Durio zibethinus HOM05D005195 ORTHO05D006088 2.3e-91 339.7 270 63.3
PSO104G0051 Papaver somniferum HOM05D005195 ORTHO05D006088 3.9e-91 339.0 210 75.7
FvH4_1g09650 Fragaria vesca HOM05D005195 ORTHO05D006088 8.7e-91 337.8 203 77.3
FAN19G0176 Fragaria x ananassa HOM05D005195 ORTHO05D006088 8.7e-91 337.8 203 77.3
FAN26G2084 Fragaria x ananassa HOM05D005195 ORTHO05D006088 8.7e-91 337.8 203 77.3
Potri.006G216500 Populus trichocarpa HOM05D005195 ORTHO05D006088 1.9e-90 336.7 210 74.8
FAN26G0153 Fragaria x ananassa HOM05D005195 ORTHO05D006088 2.5e-90 336.3 203 77.3
Gorai.001G018400 Gossypium raimondii HOM05D005195 ORTHO05D006088 5.6e-90 335.1 275 61.1
THA.LOC104804446 Tarenaya hassleriana HOM05D005195 ORTHO05D006088 5.6e-90 335.1 241 68.0
Nitab4.5_0001114g0020 Nicotiana tabacum HOM05D005195 ORTHO05D006088 9.6e-90 334.3 306 57.5
BcaC09g52118 Brassica carinata HOM05D005195 ORTHO05D006088 1.2e-89 334.0 270 61.1
MD02G1105400 Malus domestica HOM05D005195 ORTHO05D006088 1.6e-89 333.6 207 76.8
Nitab4.5_0000055g0120 Nicotiana tabacum HOM05D005195 ORTHO05D006088 1.6e-89 333.6 297 58.2
Sopen07g006530 Solanum pennellii HOM05D005195 ORTHO05D006088 1.6e-89 333.6 210 75.2
Gohir.D07G017700 Gossypium hirsutum HOM05D005195 ORTHO05D006088 2.8e-89 332.8 271 62.0
RcHm_v2.0_Chr2g0096491 Rosa chinensis HOM05D005195 ORTHO05D006088 2.8e-89 332.8 272 61.0
BcaNung02154 Brassica carinata HOM05D005195 ORTHO05D006088 4.7e-89 332.0 265 63.0
C07p59500 Brassica napus HOM05D005195 ORTHO05D006088 4.7e-89 332.0 265 63.0
CAN.G88.12 Capsicum annuum HOM05D005195 ORTHO05D006088 8.1e-89 331.3 222 71.6
Gohir.A07G017900 Gossypium hirsutum HOM05D005195 ORTHO05D006088 8.1e-89 331.3 272 62.1
AL7G18430 Arabidopsis lyrata HOM05D005195 ORTHO05D006088 1.4e-88 330.5 201 75.6
AT4G33140 Arabidopsis thaliana HOM05D005195 ORTHO05D006088 1.4e-88 330.5 201 75.6
BolC7t46394H Brassica oleracea HOM05D005195 ORTHO05D006088 2.4e-88 329.7 270 61.9
Sp7g30880 Schrenkiella parvula HOM05D005195 ORTHO05D006088 4.0e-88 328.9 288 59.4
A03p61820 Brassica napus HOM05D005195 ORTHO05D006088 5.3e-88 328.6 275 61.5
Carub.0007s0732 Capsella rubella HOM05D005195 ORTHO05D006088 5.3e-88 328.6 202 74.3
Migut.J00869 Erythranthe guttata HOM05D005195 ORTHO05D006088 6.9e-88 328.2 205 75.1
BraA03t15220Z Brassica rapa HOM05D005195 ORTHO05D006088 9.0e-88 327.8 275 61.5
C01p05540 Brassica napus HOM05D005195 ORTHO05D006088 1.2e-87 327.4 203 74.4
BolC1t00534H Brassica oleracea HOM05D005195 ORTHO05D006088 1.2e-87 327.4 203 74.4
MSTRG.19420 Avicennia marina HOM05D005195 ORTHO05D006088 2.0e-87 326.6 205 74.6
Sc14g0000920 Simmondsia chinensis HOM05D005195 ORTHO05D006088 2.0e-87 326.6 192 78.6
Aa31sc810G10 Aethionema arabicum HOM05D005195 ORTHO05D006088 4.4e-87 325.5 265 62.3
A01p05070 Brassica napus HOM05D005195 ORTHO05D006088 4.4e-87 325.5 276 60.1
Thhalv10025620m.g Eutrema salsugineum HOM05D005195 ORTHO05D006088 7.6e-87 324.7 283 57.6
FAN23G0045 Fragaria x ananassa HOM05D005195 ORTHO05D006088 1.3e-86 323.9 236 67.4
BraA01t00489Z Brassica rapa HOM05D005195 ORTHO05D006088 2.9e-86 322.8 275 60.4
AUR62025326 Chenopodium quinoa HOM05D005195 ORTHO05D006088 6.4e-86 321.6 192 77.6
unitig_578.g15872 Utricularia gibba HOM05D005195 ORTHO05D006088 6.4e-86 321.6 209 71.8
MBI19_g32876_MAGBIO Magnolia biondii HOM05D005195 ORTHO05D006088 1.1e-85 320.9 233 68.7
Ca_02313_v3 Cicer arietinum L. HOM05D005195 ORTHO05D006088 1.4e-85 320.5 163 91.4
Os06g0192900 Oryza sativa ssp. japonica HOM05D005195 ORTHO05D006088 1.9e-85 320.1 210 70.5
AUR62028337 Chenopodium quinoa HOM05D005195 ORTHO05D006088 2.4e-85 319.7 279 57.3
Zm00001eb374160 Zea mays HOM05D005195 ORTHO05D006088 4.2e-85 318.9 280 58.2
CDE05G1368 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 5.1e-83 312.0 202 72.3
Actinidia33513 Actinidia chinensis HOM05D000417 ORTHO05D006088 1.5e-82 310.5 212 72.2
HPP92_002369 Vanilla planifolia HOM05D005195 ORTHO05D006088 5.6e-82 308.5 198 73.7
SHI27969 Sapria himalayana HOM05D005195 ORTHO05D006088 1.3e-81 307.4 207 71.0
HPP92_027596 Vanilla planifolia HOM05D005195 ORTHO05D006088 2.1e-81 306.6 267 60.3
CDE07G0654 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 2.4e-80 303.1 216 64.8
CDE06G1243 Ceratophyllum demersum HOM05D005195 ORTHO05D006088 6.9e-80 301.6 303 51.5
HPP92_019108 Vanilla planifolia HOM05D005195 ORTHO05D006088 1.3e-78 297.4 199 67.8
Oeu055315.1 Olea europaea HOM05D005195 ORTHO05D006088 1.7e-78 297.0 226 66.4
Rhsim05G0001200 Rhododendron simsii HOM05D005195 ORTHO05D006088 3.8e-78 295.8 260 60.4
SEGI_21946 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 6.2e-73 278.5 202 61.9
Mapoly0181s0009 Marchantia polymorpha HOM05D005195 ORTHO05D006088 5.3e-72 275.4 201 60.7
Pp3c5_26930 Physcomitrium patens HOM05D005195 ORTHO05D006088 3.8e-70 269.2 201 63.2
CARHR241160 Cardamine hirsuta HOM05D005195 ORTHO05D006088 7.1e-69 265.0 160 73.1
Migut.L00513 Erythranthe guttata HOM05D005195 ORTHO05D006088 7.9e-68 261.5 161 75.2
DCAR_024788 Daucus carota HOM05D005195 ORTHO05D006088 3.9e-67 259.2 202 67.3
Glyma.17G255700 Glycine max HOM05D005195 ORTHO05D006088 6.2e-65 251.9 143 81.8
Dinv42438 Davidia involucrata HOM05D005195 ORTHO05D006088 1.7e-62 243.8 144 79.9
Solyc07g017700.3 Solanum lycopersicum HOM05D005195 ORTHO05D006088 4.9e-62 242.3 148 76.4
vmacro06379 Vaccinium macrocarpon HOM05D005195 ORTHO05D006088 5.5e-61 238.8 247 55.1
Cre16.g661550 Chlamydomonas reinhardtii HOM05D005195 ORTHO05D006088 2.5e-58 229.9 204 55.4
Peaxi162Scf00452g00117 Petunia axillaris HOM05D005195 ORTHO05D006088 1.1e-48 198.0 121 75.2
PRCOL_00003934 Prasinoderma coloniale HOM05D005195 ORTHO05D006088 1.0e-43 181.4 174 49.4
EL10Ac7g16303 Beta vulgaris HOM05D005195 ORTHO05D006088 3.0e-43 179.9 146 61.6
RcHm_v2.0_Chr2g0117071 Rosa chinensis HOM05D005195 ORTHO05D006088 2.4e-40 170.2 156 55.8
Pp3c6_3390 Physcomitrium patens HOM05D005195 ORTHO05D006088 1.0e-30 138.3 117 55.6
SEGI_31296 Sequoiadendron giganteum HOM05D005195 ORTHO05D006088 1.2e-23 114.8 86 57.0
Ca_29779_v3 Cicer arietinum L. HOM05D000417 ORTHO05D000342 3.6e-20 103.2 155 43.2
SGA_v2.0_scaffold31G12703 Striga asiatica HOM05D005195 ORTHO05D006088 5.7e-18 95.9 65 73.8
Solyc07g017710.1 Solanum lycopersicum HOM05D005195 ORTHO05D006088 3.7e-17 93.2 59 74.6
COL.COLO4_21182 Corchorus olitorius HOM05D005195 ORTHO05D006088 7.7e-15 85.5 137 40.1
PGSC0003DMG400002304 Solanum tuberosum HOM05D005195 ORTHO05D006088 4.2e-13 79.7 52 73.1
Peaxi162Scf00452g00122 Petunia axillaris HOM05D005195 ORTHO05D006088 9.5e-13 78.6 51 76.5
Migut.L01605 Erythranthe guttata HOM05D005195 ORTHO05D006088 3.6e-12 76.6 114 41.2
Zm00001eb045610 Zea mays HOM05D005195 ORTHO05D006088 2.9e-09 67.0 43 74.4


User provided reference genes

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