Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 3.2e-193 678.3 363 100.0
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 8.8e-175 617.1 363 87.9
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 5.7e-174 614.4 363 88.2
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 3.7e-165 585.1 363 82.1
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.1e-161 573.5 363 81.5
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 6.1e-160 567.8 363 79.6
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 7.0e-156 554.3 329 84.2
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 8.9e-143 510.8 329 76.6
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.5e-142 510.0 364 71.7
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 5.4e-140 501.5 330 75.2
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.0e-139 499.6 362 70.2
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 2.7e-139 499.2 362 70.2
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 3.5e-139 498.8 362 69.6
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 5.9e-139 498.0 362 69.6
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 2.3e-138 496.1 330 75.5
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 8.6e-138 494.2 363 69.7
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 1.1e-137 493.8 363 68.9
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 1.9e-137 493.0 362 70.7
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 1.9e-137 493.0 327 73.4
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.9e-137 493.0 330 75.2
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.4e-135 486.9 362 68.5
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 3.0e-135 485.7 364 68.1
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 4.0e-135 485.3 330 72.7
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 6.8e-135 484.6 364 67.6
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 8.9e-135 484.2 364 67.9
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 2.0e-134 483.0 331 72.8
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 2.6e-134 482.6 364 67.6
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 2.6e-134 482.6 364 67.6
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 4.4e-134 481.9 331 72.5
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 4.4e-134 481.9 363 67.2
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 9.8e-134 480.7 364 67.6
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.7e-133 479.9 330 71.8
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 4.9e-133 478.4 329 72.3
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 1.1e-132 477.2 330 71.5
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 5.4e-132 474.9 364 65.7
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 7.0e-132 474.6 330 71.8
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 9.2e-132 474.2 385 65.2
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 1.2e-131 473.8 330 71.5
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 2.0e-131 473.0 328 72.6
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 3.5e-131 472.2 364 65.4
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 1.7e-130 469.9 330 72.1
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 1.7e-130 469.9 364 67.0
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 2.3e-130 469.5 366 65.0
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 2.3e-130 469.5 330 68.8
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 1.5e-129 466.8 330 70.6
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 1.9e-129 466.5 366 65.0
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.9e-129 466.5 330 69.7
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.5e-129 466.1 331 69.5
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 5.6e-129 464.9 348 70.1
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 5.6e-129 464.9 330 69.1
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 9.5e-129 464.2 364 66.5
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.2e-128 463.8 363 66.1
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 8.0e-128 461.1 363 66.1
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 1.1e-127 460.7 329 69.6
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 1.1e-127 460.7 364 65.1
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 3.1e-127 459.1 327 71.9
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 3.1e-127 459.1 349 67.0
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 4.0e-127 458.8 361 67.9
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 5.2e-127 458.4 328 69.8
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 6.8e-127 458.0 368 63.9
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.2e-126 457.2 330 69.4
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.5e-126 456.8 327 71.3
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 5.8e-126 454.9 364 64.3
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.8e-126 454.1 317 70.7
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 1.3e-125 453.8 363 63.9
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 2.9e-125 452.6 330 68.5
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 2.9e-125 452.6 330 68.5
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 8.3e-125 451.1 363 63.9
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 3.5e-123 445.7 330 68.2
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 7.3e-121 438.0 383 60.3
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 9.5e-121 437.6 266 86.1
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 2.1e-120 436.4 280 76.4
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 6.2e-120 434.9 360 62.8
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.2e-118 430.6 361 59.3
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 8.3e-117 424.5 366 62.0
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 4.1e-116 422.2 304 71.1
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 7.1e-116 421.4 362 61.9
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 1.2e-115 420.6 330 66.1
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 6.0e-115 418.3 440 55.5
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 1.0e-114 417.5 320 65.6
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.0e-114 417.5 316 65.8
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 6.6e-114 414.8 299 68.6
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 6.2e-112 408.3 327 61.5
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 7.1e-108 394.8 262 73.3
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 7.8e-107 391.3 300 65.3
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 1.1e-105 387.5 309 62.8
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 9.0e-103 377.9 321 61.4
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 9.3e-100 367.9 327 60.6
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 4.6e-99 365.5 325 59.4
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 4.6e-99 365.5 327 55.0
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 6.0e-99 365.2 267 71.9
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 1.3e-98 364.0 332 55.7
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 3.9e-98 362.5 269 68.8
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 8.7e-98 361.3 266 70.3
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 1.5e-97 360.5 233 76.8
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 3.6e-96 355.9 271 70.1
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 3.1e-95 352.8 232 76.7
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 1.9e-92 343.6 232 73.7
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 5.1e-90 335.5 232 72.4
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 2.5e-89 333.2 289 58.5
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 8.1e-88 328.2 232 70.7
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 4.5e-86 322.4 386 46.1
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 5.6e-81 305.4 221 71.0
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 6.0e-75 285.4 336 46.7
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 2.3e-74 283.5 309 49.2
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 1.0e-69 268.1 183 73.8
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 9.7e-65 251.5 339 43.7
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 1.1e-57 228.0 180 63.3
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 5.9e-54 215.7 432 35.0
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 4.2e-52 209.5 219 52.5
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 5.2e-50 202.6 376 36.7
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.4e-47 194.5 212 50.0
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.8e-37 159.8 157 58.0
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 7.2e-36 155.6 311 31.8
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 2.1e-35 154.1 149 57.0
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 3.0e-34 150.2 145 53.8
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.5e-33 147.9 110 69.1
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.3e-29 134.0 135 56.3
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.6e-27 127.9 118 53.4
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 1.7e-24 117.9 96 58.3
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 6.3e-24 115.9 75 72.0
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 2.4e-23 114.0 308 30.2
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 7.0e-23 112.5 73 71.2
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 1.0e-21 108.6 91 62.6
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 1.0e-21 108.6 81 66.7
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 3.3e-20 103.6 109 55.0
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 1.2e-11 75.1 93 49.5
Ca_29267_v3 Cicer arietinum L. HOM05D005388 ORTHO05D006281 7.5e-09 65.9 127 30.7
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 4.9e-08 63.2 175 29.7
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 1.9e-07 61.2 135 31.9
Pp3s32_101 Physcomitrium patens HOM05D005388 ORTHO05D006281 1.2e-06 58.5 127 29.1
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 1.2e-06 58.5 176 25.0
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 1.6e-06 58.2 176 24.4
CBR_g37463 Chara braunii HOM05D003894 ORTHO05D004584 2.1e-06 57.8 95 36.8
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 2.1e-06 57.8 155 30.3
Ah.10g037930 Amaranthus hybridus HOM05D006412 ORTHO05D008025 3.5e-06 57.0 30 83.3
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 3.5e-06 57.0 120 30.0
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 4.6e-06 56.6 154 26.6
CBR_g39106 Chara braunii HOM05D021767 ORTHO05D024942 7.8e-06 55.8 172 25.6
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 7.8e-06 55.8 93 36.6
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 7.8e-06 55.8 120 30.0


User provided reference genes

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