Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 1.4e-104 383.3 233 100.0
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 2.2e-22 110.2 59 89.8
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 2.2e-22 110.2 59 89.8
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 2.2e-22 110.2 59 89.8
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 3.8e-22 109.4 59 88.1
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 6.5e-22 108.6 59 88.1
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 1.4e-21 107.5 59 86.4
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 1.4e-21 107.5 59 86.4
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 1.9e-21 107.1 59 86.4
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 1.9e-21 107.1 59 86.4
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 5.5e-21 105.5 59 84.7
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 5.5e-21 105.5 59 84.7
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 5.5e-21 105.5 59 84.7
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 5.5e-21 105.5 59 84.7
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 5.5e-21 105.5 59 84.7
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 1.8e-19 100.5 59 78.0
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 1.8e-19 100.5 59 78.0
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 2.3e-19 100.1 59 81.4
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 3.0e-19 99.8 59 81.4
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 3.0e-19 99.8 59 81.4
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 3.0e-19 99.8 59 81.4
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 3.9e-19 99.4 59 79.7
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 5.2e-19 99.0 59 79.7
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 5.2e-19 99.0 59 79.7
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 5.2e-19 99.0 59 79.7
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 6.7e-19 98.6 59 79.7
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 6.7e-19 98.6 59 79.7
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 6.7e-19 98.6 59 79.7
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 6.7e-19 98.6 59 78.0
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 6.7e-19 98.6 59 79.7
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 6.7e-19 98.6 59 79.7
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 8.8e-19 98.2 59 78.0
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 8.8e-19 98.2 59 79.7
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 8.8e-19 98.2 59 79.7
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 1.1e-18 97.8 59 79.7
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 1.5e-18 97.4 59 78.0
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.5e-18 97.4 59 79.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 1.5e-18 97.4 59 76.3
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 1.5e-18 97.4 59 78.0
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 1.5e-18 97.4 59 78.0
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 2.0e-18 97.1 59 78.0
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 2.0e-18 97.1 59 76.3
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 2.0e-18 97.1 59 78.0
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 2.0e-18 97.1 59 78.0
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 2.6e-18 96.7 59 78.0
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 2.6e-18 96.7 59 76.3
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 2.6e-18 96.7 59 78.0
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 3.3e-18 96.3 59 76.3
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 3.3e-18 96.3 59 76.3
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 3.3e-18 96.3 59 76.3
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 3.3e-18 96.3 59 76.3
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 4.4e-18 95.9 59 78.0
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 4.4e-18 95.9 59 76.3
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 4.4e-18 95.9 59 76.3
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 4.4e-18 95.9 59 76.3
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 4.4e-18 95.9 59 76.3
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 4.4e-18 95.9 59 78.0
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 4.4e-18 95.9 59 78.0
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 5.7e-18 95.5 59 78.0
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 5.7e-18 95.5 59 76.3
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 5.7e-18 95.5 59 78.0
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 5.7e-18 95.5 67 73.1
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 5.7e-18 95.5 59 76.3
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 5.7e-18 95.5 59 78.0
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 5.7e-18 95.5 59 78.0
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 5.7e-18 95.5 59 74.6
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 7.4e-18 95.1 55 81.8
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 7.4e-18 95.1 59 76.3
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 9.7e-18 94.7 59 78.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 1.7e-17 94.0 59 76.3
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 1.7e-17 94.0 59 76.3
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 1.7e-17 94.0 59 76.3
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 1.7e-17 94.0 59 76.3
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 2.2e-17 93.6 59 72.9
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 2.2e-17 93.6 59 76.3
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 2.8e-17 93.2 58 75.9
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 3.7e-17 92.8 59 71.2
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 3.7e-17 92.8 59 74.6
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 4.8e-17 92.4 59 74.6
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 6.3e-17 92.0 59 74.6
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 6.3e-17 92.0 59 74.6
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 6.3e-17 92.0 59 74.6
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 6.3e-17 92.0 59 74.6
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 6.3e-17 92.0 59 74.6
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 6.3e-17 92.0 59 74.6
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 6.3e-17 92.0 59 74.6
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 8.2e-17 91.7 59 72.9
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 8.2e-17 91.7 59 71.2
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 8.2e-17 91.7 59 72.9
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 8.2e-17 91.7 59 71.2
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 1.1e-16 91.3 59 71.2
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 1.1e-16 91.3 59 71.2
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 1.1e-16 91.3 59 71.2
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.1e-16 91.3 59 71.2
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 1.1e-16 91.3 59 71.2
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 1.1e-16 91.3 59 72.9
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 1.4e-16 90.9 59 72.9
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 1.4e-16 90.9 59 72.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 1.8e-16 90.5 59 72.9
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 1.8e-16 90.5 55 74.5
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 1.8e-16 90.5 59 69.5
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 2.4e-16 90.1 59 74.6
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 2.4e-16 90.1 59 74.6
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 3.1e-16 89.7 59 69.5
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 3.1e-16 89.7 59 69.5
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 3.1e-16 89.7 59 71.2
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 4.1e-16 89.4 59 69.5
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 4.1e-16 89.4 59 69.5
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 4.1e-16 89.4 59 71.2
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 4.1e-16 89.4 59 71.2
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 5.3e-16 89.0 59 74.6
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 5.3e-16 89.0 59 72.9
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 7.0e-16 88.6 59 72.9
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 7.0e-16 88.6 59 67.8
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 9.1e-16 88.2 59 67.8
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 9.1e-16 88.2 59 72.9
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 9.1e-16 88.2 59 71.2
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.2e-15 87.8 60 68.3
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 1.6e-15 87.4 59 67.8
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 1.6e-15 87.4 59 72.9
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 2.0e-15 87.0 59 69.5
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.6e-15 86.7 59 67.8
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 2.6e-15 86.7 59 69.5
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 5.9e-15 85.5 58 74.1
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 5.9e-15 85.5 60 68.3
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 2.2e-14 83.6 59 64.4
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 3.8e-14 82.8 59 67.8
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 5.0e-14 82.4 59 62.7
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 6.5e-14 82.0 59 66.1
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 1.1e-13 81.3 59 66.1
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 1.1e-13 81.3 61 67.2
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 4.2e-13 79.3 61 65.6
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 9.4e-13 78.2 55 60.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 3.6e-12 76.3 61 60.7
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 1.0e-11 74.7 90 50.0
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.8e-11 73.9 54 61.1
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 2.3e-11 73.6 43 79.1
Medtr2g008590 Medicago truncatula HOM05D000808 ORTHO05D000863 1.5e-10 70.9 44 70.5
Ca_00126_v3 Cicer arietinum L. HOM05D000808 ORTHO05D000863 5.7e-10 68.9 44 72.7
Medtr2g078940 Medicago truncatula HOM05D000808 ORTHO05D048898 1.1e-08 64.7 44 65.9
TPR.G13615 Trifolium pratense HOM05D000808 ORTHO05D000863 1.2e-07 61.2 32 84.4


User provided reference genes

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