Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25236 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1887.1 1042 100.0
Psat1g052560 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1575.8 1041 79.9
Ca_04138_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1530.0 1046 79.4
Medtr6g004240 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1500.7 1046 78.6
Lj2g0002647 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1429.8 1036 74.4
Glyma.05G002100 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1427.2 1040 74.9
Glyma.02G089000 Glycine max HOM05D003588 ORTHO05D004252 0.0e+00 1416.0 1033 72.6
Lalb_Chr10g0091441 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1372.1 1033 72.4
Lj1g0020363 Lotus japonicus HOM05D003588 ORTHO05D004252 0.0e+00 1359.4 1060 68.7
VMungo1383G2782 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1329.7 1025 71.7
Ca_08090_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 0.0e+00 1325.1 1030 71.6
arahy.Tifrunner.gnm1.ann1.JMF5N7 Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1323.9 1032 69.8
arahy.Tifrunner.gnm1.ann1.QJYU1D Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1323.9 1032 69.8
Medtr7g082650 Medicago truncatula HOM05D003588 ORTHO05D004252 0.0e+00 1318.1 1035 71.8
VMungo0464G0444 Vigna mungo HOM05D003588 ORTHO05D004252 0.0e+00 1316.2 1019 70.7
TPR.G16544 Trifolium pratense HOM05D003588 ORTHO05D004252 0.0e+00 1275.4 1048 67.3
GSVIVG01030979001 Vitis vinifera HOM05D003588 ORTHO05D004252 0.0e+00 1247.6 1039 66.2
QL02p050339 Quercus lobata HOM05D003588 ORTHO05D004252 0.0e+00 1245.0 1076 66.6
Potri.004G095900 Populus trichocarpa HOM05D003588 ORTHO05D004252 0.0e+00 1242.3 1039 66.3
Gohir.D07G181700 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1235.7 1039 64.2
Gorai.001G202700 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1229.5 1039 63.5
TAR622G0110 Trochodendron aralioides HOM05D003588 ORTHO05D004252 0.0e+00 1229.5 1039 64.8
CSS0016689 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1228.8 1035 64.8
Haze_14184 Corylus avellana HOM05D003588 ORTHO05D004252 0.0e+00 1228.8 1108 63.7
Gohir.A07G174400 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1227.6 1039 63.3
Manes.02G071350 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1227.6 1034 66.2
CSS0025104 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1226.8 1036 64.7
Atru.chr1.1617 Acer truncatum HOM05D003588 ORTHO05D004252 0.0e+00 1223.8 1037 66.0
TWI53G1720 Tripterygium wilfordii HOM05D003588 ORTHO05D004252 0.0e+00 1221.1 1036 64.8
Lalb_Chr06g0176731 Lupinus albus HOM05D003588 ORTHO05D004252 0.0e+00 1217.6 1064 63.9
Ciclev10010937m.g Citrus clementina HOM05D003588 ORTHO05D004252 0.0e+00 1215.7 1035 62.6
Thecc.04G128900 Theobroma cacao HOM05D003588 ORTHO05D004252 0.0e+00 1212.6 1039 62.6
Sed0005237 Sechium edule HOM05D003588 ORTHO05D004252 0.0e+00 1208.0 1034 61.8
PSO017G4387 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1204.1 1042 66.1
CsaV3_2G033840 Cucumis sativus L. HOM05D003588 ORTHO05D004252 0.0e+00 1203.7 1037 62.4
Gorai.007G184400 Gossypium raimondii HOM05D003588 ORTHO05D004252 0.0e+00 1203.7 1039 61.5
PSO478G1111 Papaver somniferum HOM05D003588 ORTHO05D004252 0.0e+00 1203.7 1042 66.0
Gohir.A11G165800 Gossypium hirsutum HOM05D003588 ORTHO05D004252 0.0e+00 1200.3 1039 61.1
MELO3C008156.2 Cucumis melo HOM05D003588 ORTHO05D004252 0.0e+00 1197.6 1039 64.9
Psat3g097680 Pisum sativum HOM05D003588 ORTHO05D004252 0.0e+00 1187.2 1036 66.8
Eucgr.F02790 Eucalyptus grandis HOM05D003588 ORTHO05D004252 0.0e+00 1186.0 1034 64.3
Manes.01G112900 Manihot esculenta HOM05D003588 ORTHO05D004252 0.0e+00 1186.0 1033 64.9
Prupe.3G148000 Prunus persica HOM05D003588 ORTHO05D004252 0.0e+00 1182.9 1035 64.9
FvH4_7g07990 Fragaria vesca HOM05D003588 ORTHO05D004252 0.0e+00 1181.8 1040 63.9
Sabra04G0065000 Salix brachista HOM05D003588 ORTHO05D004252 0.0e+00 1179.5 1036 64.0
PGR004G1031 Punica granatum HOM05D003588 ORTHO05D004252 0.0e+00 1179.1 1034 62.3
Nn4g23954 Nelumbo nucifera HOM05D003588 ORTHO05D004252 0.0e+00 1177.5 1040 65.1
Duzib138G1780 Durio zibethinus HOM05D003588 ORTHO05D004252 0.0e+00 1175.2 1039 63.3
CANSAT78G2002 Cannabis sativa HOM05D003588 ORTHO05D004252 0.0e+00 1172.9 1034 64.4
MD09G1255900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1172.9 1031 65.1
MD17G1249900 Malus domestica HOM05D003588 ORTHO05D004252 0.0e+00 1171.4 1028 65.3
Cc07_g08540 Coffea canephora HOM05D003588 ORTHO05D004252 0.0e+00 1166.4 1055 61.1
COL.COLO4_09374 Corchorus olitorius HOM05D003588 ORTHO05D004252 0.0e+00 1164.4 1083 59.6
arahy.Tifrunner.gnm1.ann1.K3Z2GB Arachis hypogaea HOM05D003588 ORTHO05D004252 0.0e+00 1162.1 1065 62.3
MBI16_g38076_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 0.0e+00 1162.1 1073 61.7
Dinv34794 Davidia involucrata HOM05D003588 ORTHO05D004252 0.0e+00 1160.2 1016 62.4
THA.LOC104820941 Tarenaya hassleriana HOM05D003588 ORTHO05D004252 0.0e+00 1159.1 1048 62.4
Rhsim10G0072600 Rhododendron simsii HOM05D003588 ORTHO05D004252 0.0e+00 1155.2 1098 60.0
Migut.H00238 Erythranthe guttata HOM05D003588 ORTHO05D004252 0.0e+00 1148.7 1043 60.3
FAN06G2375 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1146.3 1106 60.0
FAN10G2177 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1146.0 1111 60.0
Hund16184 Selenicereus undatus HOM05D003588 ORTHO05D004252 0.0e+00 1141.7 1019 60.2
AUR62009039 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1139.8 1036 60.7
ClCG11G007740 Citrullus lanatus HOM05D003588 ORTHO05D004252 0.0e+00 1138.6 1025 60.3
Sopen02g031000 Solanum pennellii HOM05D003588 ORTHO05D004252 0.0e+00 1138.3 1048 61.5
Solyc02g086330.4 Solanum lycopersicum HOM05D003588 ORTHO05D004252 0.0e+00 1134.0 1051 61.0
Phvul.004G002300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1127.1 851 71.0
Sp6g27950 Schrenkiella parvula HOM05D003588 ORTHO05D004252 0.0e+00 1127.1 1039 61.8
Nitab4.5_0000753g0220 Nicotiana tabacum HOM05D003588 ORTHO05D004252 0.0e+00 1121.7 1029 59.3
CARHR197100 Cardamine hirsuta HOM05D003588 ORTHO05D004252 0.0e+00 1119.8 1035 62.3
DCAR_025903 Daucus carota HOM05D003588 ORTHO05D004252 0.0e+00 1118.6 1037 59.0
BcaC03g18474 Brassica carinata HOM05D003588 ORTHO05D004252 0.0e+00 1115.9 1035 61.7
BolC2t06743H Brassica oleracea HOM05D003588 ORTHO05D004252 0.0e+00 1115.9 1036 60.6
C02p08190 Brassica napus HOM05D003588 ORTHO05D004252 0.0e+00 1114.4 1036 60.6
Oeu050384.1 Olea europaea HOM05D003588 ORTHO05D004252 0.0e+00 1112.1 1057 59.1
AUR62023267 Chenopodium quinoa HOM05D003588 ORTHO05D004252 0.0e+00 1110.5 1017 60.5
AL6G27090 Arabidopsis lyrata HOM05D003588 ORTHO05D004252 0.0e+00 1110.1 1034 61.6
BraA02t05314Z Brassica rapa HOM05D003588 ORTHO05D004252 0.0e+00 1109.4 1036 61.1
AT5G16210 Arabidopsis thaliana HOM05D003588 ORTHO05D004252 0.0e+00 1108.6 1034 61.3
ECA232G2944 Erigeron canadensis HOM05D003588 ORTHO05D004252 0.0e+00 1106.3 1039 57.9
Lj4C184G4 Lonicera japonica HOM05D003588 ORTHO05D004252 0.0e+00 1106.3 1046 59.8
Carub.0006s1440 Capsella rubella HOM05D003588 ORTHO05D004252 0.0e+00 1104.7 1036 60.6
Aa31LG11G13400 Aethionema arabicum HOM05D003588 ORTHO05D004252 0.0e+00 1103.6 1040 60.9
CAN.G625.55 Capsicum annuum HOM05D003588 ORTHO05D000105 0.0e+00 1102.4 1035 59.8
MSTRG.2779 Avicennia marina HOM05D003588 ORTHO05D004252 0.0e+00 1098.2 1051 58.2
Phvul.008G008300 Phaseolus vulgaris HOM05D003588 ORTHO05D004252 0.0e+00 1097.0 804 74.5
FAN03G2066 Fragaria x ananassa HOM05D003588 ORTHO05D004252 0.0e+00 1091.6 1085 59.3
HanXRQChr09g0262691 Helianthus annuus HOM05D003588 ORTHO05D004252 0.0e+00 1090.5 1036 60.4
CSS0045616 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 0.0e+00 1087.4 1034 57.4
ATR0681G033 Amborella trichopoda HOM05D003588 ORTHO05D004252 0.0e+00 1079.7 1043 59.3
Actinidia15898 Actinidia chinensis HOM05D003588 ORTHO05D004252 2.1e-311 1072.4 1024 57.5
Lsat_1_v5_gn_4_155600 Lactuca sativa HOM05D003588 ORTHO05D004252 2.9e-311 1072.0 1038 58.2
Sc10g0001060 Simmondsia chinensis HOM05D003588 ORTHO05D004252 1.1e-310 1070.1 998 61.7
Ah.10g037630 Amaranthus hybridus HOM05D003588 ORTHO05D004252 2.3e-308 1062.4 1028 59.8
Thhalv10012470m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 6.6e-308 1060.8 1037 59.7
SGA_v2.0_scaffold49G18119 Striga asiatica HOM05D003588 ORTHO05D004252 1.9e-307 1059.3 1039 56.4
Peaxi162Scf00877g00020 Petunia axillaris HOM05D003588 ORTHO05D004252 3.1e-305 1052.0 1024 59.8
EL10Ac2g04530 Beta vulgaris HOM05D003588 ORTHO05D004252 2.1e-301 1039.3 1097 55.2
arahy.Tifrunner.gnm1.ann1.CE0ZIG Arachis hypogaea HOM05D003588 ORTHO05D004252 3.9e-300 1035.0 914 64.4
BcaNung02226 Brassica carinata HOM05D003588 ORTHO05D004252 5.1e-300 1034.6 1037 57.7
Gohir.D11G172000 Gossypium hirsutum HOM05D003588 ORTHO05D004252 1.7e-292 1009.6 847 62.2
BcaC03g18481 Brassica carinata HOM05D003588 ORTHO05D004252 6.6e-292 1007.7 1049 56.2
vmacro22953 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 1.4e-289 1000.0 1368 46.2
Os01g0514300 Oryza sativa ssp. japonica HOM05D003588 ORTHO05D004252 2.2e-287 992.6 1052 54.3
Nitab4.5_0008521g0020 Nicotiana tabacum HOM05D003588 ORTHO05D004252 6.2e-282 974.5 1029 54.7
Cpa.g.sc170.32 Carica papaya HOM05D003588 ORTHO05D004252 1.3e-263 913.7 1035 51.5
HPP92_020150 Vanilla planifolia HOM05D003588 ORTHO05D004252 5.7e-259 898.3 984 51.6
CiPaw.04G044200 Carya illinoinensis HOM05D003588 ORTHO05D004252 1.3e-258 897.1 564 79.8
MBI16_g39817_MAGBIO Magnolia biondii HOM05D003588 ORTHO05D004252 6.9e-257 891.3 845 61.4
QL04p012047 Quercus lobata HOM05D003588 ORTHO05D004252 5.0e-255 885.2 618 73.5
unitig_899.g14514 Utricularia gibba HOM05D003588 ORTHO05D004252 7.4e-251 871.3 1071 49.6
A02p03430 Brassica napus HOM05D003588 ORTHO05D004252 1.8e-249 866.7 672 66.8
Mapoly0103s0005 Marchantia polymorpha HOM05D003588 ORTHO05D004252 7.0e-233 811.6 1044 47.6
AagrBONN_evm.TU.Sc2ySwM_344.2595 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.2e-219 767.7 1039 45.1
MD17G1249700 Malus domestica HOM05D003588 ORTHO05D004252 2.3e-215 753.4 530 72.8
Pp3c18_21770 Physcomitrium patens HOM05D003588 ORTHO05D004252 3.2e-214 749.6 1040 42.7
Pp3c18_21850 Physcomitrium patens HOM05D003588 ORTHO05D004252 9.5e-214 748.0 1040 42.6
Dinv33964 Davidia involucrata HOM05D003588 ORTHO05D004252 2.6e-211 740.0 493 74.8
vmacro05528 Vaccinium macrocarpon HOM05D003588 ORTHO05D004252 4.1e-209 732.6 812 54.8
Pp3c3_38010 Physcomitrium patens HOM05D003588 ORTHO05D004252 2.1e-189 667.2 1048 41.2
CDE09G1345 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 7.3e-182 642.1 772 52.2
RcHm_v2.0_Chr3g0494111 Rosa chinensis HOM05D003588 ORTHO05D004252 9.5e-182 641.7 637 62.0
SMO356G0339 Selaginella moellendorffii HOM05D003588 ORTHO05D004252 1.1e-180 638.3 1020 38.3
Aqoxy3G00198 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.6e-176 622.9 635 57.8
Duzib133G0570 Durio zibethinus HOM05D003588 ORTHO05D004252 3.1e-164 583.6 396 72.2
CBR_g34722 Chara braunii HOM05D003588 ORTHO05D004252 1.1e-158 565.1 1254 35.8
RcHm_v2.0_Chr3g0494121 Rosa chinensis HOM05D003588 ORTHO05D004252 1.1e-158 565.1 396 71.7
Aqoxy3G00199 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 8.4e-154 548.9 403 68.5
TPR.G25232 Trifolium pratense HOM05D003588 ORTHO05D004252 2.2e-146 524.2 267 99.6
MD17G1249200 Malus domestica HOM05D003588 ORTHO05D004252 3.6e-136 490.3 409 63.6
Dinv33965 Davidia involucrata HOM05D003588 ORTHO05D004252 1.3e-122 445.3 521 50.5
arahy.Tifrunner.gnm1.ann1.SZ4JBM Arachis hypogaea HOM05D003588 ORTHO05D009236 8.8e-119 432.6 392 62.8
Zm00001eb341830 Zea mays HOM05D003588 ORTHO05D004252 1.8e-87 328.6 221 72.9
A10p22850 Brassica napus HOM05D003588 ORTHO05D004252 9.9e-62 243.0 210 59.5
Psat1g004680 Pisum sativum HOM05D003588 ORTHO05D004252 1.1e-60 239.6 158 77.2
BraA10t44352Z Brassica rapa HOM05D003588 ORTHO05D004252 3.2e-60 238.0 205 59.5
Zm00001eb341840 Zea mays HOM05D003588 ORTHO05D004252 1.2e-59 236.1 179 62.6
FAN01G1795 Fragaria x ananassa HOM05D003588 ORTHO05D004252 3.4e-54 218.0 399 44.1
FAN01G1119 Fragaria x ananassa HOM05D003588 ORTHO05D004252 9.9e-54 216.5 164 70.1
BcaC04g18898 Brassica carinata HOM05D003588 ORTHO05D004252 2.5e-49 201.8 208 57.2
CAN.G1113.1 Capsicum annuum HOM05D003588 ORTHO05D004252 7.3e-49 200.3 375 35.5
BcaB05g22772 Brassica carinata HOM05D003588 ORTHO05D004252 2.8e-40 171.8 202 49.5
Gohir.A08G093462 Gossypium hirsutum HOM05D003588 ORTHO05D004252 9.0e-39 166.8 184 52.2
Lalb_Chr00c03g0404241 Lupinus albus HOM05D003588 ORTHO05D004252 6.4e-37 160.6 111 73.9
Thhalv10014979m.g Eutrema salsugineum HOM05D003588 ORTHO05D004252 3.2e-36 158.3 112 69.6
Hma1.2p1_0391F.1_g142780 Hydrangea macrophylla HOM05D003588 ORTHO05D004252 1.3e-32 146.4 103 72.8
arahy.Tifrunner.gnm1.ann1.LXU3L0 Arachis hypogaea HOM05D003588 ORTHO05D004252 3.1e-31 141.7 148 55.4
Lalb_Chr00c03g0404231 Lupinus albus HOM05D003588 ORTHO05D004252 4.5e-30 137.9 100 63.0
arahy.Tifrunner.gnm1.ann1.3AG3I6 Arachis hypogaea HOM05D003588 ORTHO05D004252 2.2e-29 135.6 83 79.5
Cre03.g205137 Chlamydomonas reinhardtii HOM05D003588 ORTHO05D004252 4.6e-27 127.9 188 36.7
Lsat_1_v5_gn_9_96101 Lactuca sativa HOM05D003588 ORTHO05D004252 4.8e-24 117.9 70 87.1
C09p60810 Brassica napus HOM05D003588 ORTHO05D004252 5.0e-21 107.8 279 32.6
BolC9t58921H Brassica oleracea HOM05D003588 ORTHO05D004252 5.0e-21 107.8 279 32.6
QL04p012055 Quercus lobata HOM05D003588 ORTHO05D004252 9.4e-20 103.6 62 79.0
BcaB08g36855 Brassica carinata HOM05D003588 ORTHO05D004252 5.1e-18 97.8 110 54.5
Lsat_1_v5_gn_5_147680 Lactuca sativa HOM05D003588 ORTHO05D004252 6.7e-18 97.4 86 59.3
Dinv12730 Davidia involucrata HOM05D003588 ORTHO05D004252 2.5e-17 95.5 60 76.7
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.3e-13 83.2 178 47.8
Aa31sc24G110 Aethionema arabicum HOM05D003588 ORTHO05D004252 6.5e-13 80.9 160 36.9
CSS0049688 Camellia sinensis var. sinensis HOM05D003588 ORTHO05D004252 4.2e-12 78.2 46 82.6
MCO16G648 Micromonas commoda HOM05D003588 ORTHO05D004252 6.7e-10 70.9 799 20.2
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 8.8e-10 70.5 187 31.6
CDE09G0638 Ceratophyllum demersum HOM05D003588 ORTHO05D004252 2.6e-09 68.9 44 68.2
Aqoxy1G03195 Aquilegia oxysepala HOM05D003588 ORTHO05D004252 4.4e-09 68.2 63 52.4
Lsat_1_v5_gn_1_73461 Lactuca sativa HOM05D003588 ORTHO05D004252 9.7e-09 67.0 37 83.8
TPR.G213 Trifolium pratense HOM05D003588 ORTHO05D004252 1.7e-08 66.2 36 86.1
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 5.3e-07 61.2 37 75.7
AagrBONN_evm.TU.Sc2ySwM_228.5767 Anthoceros agrestis HOM05D003588 ORTHO05D004252 1.2e-06 60.1 55 50.9
TAR374G0202 Trochodendron aralioides HOM05D003588 ORTHO05D004252 5.9e-06 57.8 31 80.6


User provided reference genes

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