Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 6.9e-176 620.5 318 100.0
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 1.4e-96 357.1 201 89.6
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 1.2e-95 354.0 200 88.5
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.2e-92 341.7 200 85.0
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.1e-75 287.7 225 67.6
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.5e-74 283.9 225 67.1
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 3.4e-74 282.7 201 70.6
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 5.5e-72 275.4 203 69.5
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 6.1e-71 271.9 224 64.7
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.2e-64 249.6 201 63.2
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 4.2e-64 249.2 201 63.2
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 2.7e-63 246.5 202 67.3
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.7e-63 245.7 201 61.2
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 1.8e-62 243.8 205 63.4
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 6.7e-62 241.9 203 61.1
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 1.5e-61 240.7 202 62.4
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 2.2e-60 236.9 187 63.1
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 8.2e-60 235.0 201 60.7
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.7e-57 227.3 204 58.8
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.8e-57 226.1 201 61.2
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.4e-56 224.2 221 55.7
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 5.5e-56 222.2 203 57.6
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.0e-54 218.0 221 52.5
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 1.8e-54 217.2 201 57.2
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 2.3e-54 216.9 219 54.8
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 6.7e-54 215.3 220 51.4
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 6.7e-54 215.3 219 53.4
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 8.8e-54 214.9 221 51.6
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 8.8e-54 214.9 221 53.4
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.1e-53 214.5 222 51.8
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-53 214.5 221 52.9
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.3e-53 213.0 219 51.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.3e-53 213.0 220 52.7
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.7e-53 212.2 218 53.2
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 9.7e-53 211.5 221 51.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 9.7e-53 211.5 218 51.8
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.3e-52 211.1 219 52.1
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.7e-52 210.7 220 53.2
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.7e-52 210.7 220 52.7
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.8e-52 209.9 216 52.3
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 2.8e-52 209.9 218 50.9
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 3.7e-52 209.5 216 52.8
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.8e-52 209.1 219 51.1
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.8e-52 209.1 220 52.3
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 6.3e-52 208.8 219 53.0
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.3e-52 208.8 219 51.1
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 8.2e-52 208.4 208 54.3
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 1.4e-51 207.6 220 52.3
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 1.4e-51 207.6 221 50.7
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 1.8e-51 207.2 220 50.5
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.8e-51 207.2 219 52.1
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.4e-51 206.8 219 52.1
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.4e-51 206.8 212 52.4
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.3e-51 205.7 212 53.3
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.0e-51 205.3 220 51.4
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 7.0e-51 205.3 221 51.6
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.2e-50 204.5 221 49.8
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-50 204.5 220 50.9
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 1.6e-50 204.1 219 51.6
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.5e-50 203.0 200 53.5
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 5.9e-50 202.2 219 51.1
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.7e-50 201.8 212 53.3
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.0e-49 201.4 220 51.8
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.3e-49 201.1 221 50.2
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.3e-49 201.1 212 53.3
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 2.9e-49 199.9 226 51.3
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.8e-49 199.5 212 52.8
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 3.8e-49 199.5 213 52.1
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 8.5e-49 198.4 220 49.1
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 1.1e-48 198.0 219 49.3
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 3.2e-48 196.4 206 51.0
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 5.5e-48 195.7 221 49.3
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 9.4e-48 194.9 220 51.4
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.2e-47 194.5 218 49.5
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 2.7e-47 193.4 219 48.9
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 1.0e-46 191.4 290 40.0
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.0e-46 191.4 215 48.8
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 1.0e-46 191.4 221 49.8
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 2.3e-46 190.3 219 47.0
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.2e-45 188.0 220 47.7
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.0e-45 187.2 220 46.4
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.6e-45 186.8 210 49.0
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.3e-44 184.5 220 48.2
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 2.2e-44 183.7 220 48.6
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 2.8e-44 183.3 220 44.1
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.8e-44 183.3 200 49.0
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.8e-44 182.6 230 46.1
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 4.8e-44 182.6 219 47.9
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 5.3e-43 179.1 201 47.8
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 9.1e-43 178.3 226 46.0
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 1.2e-42 177.9 200 48.5
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.0e-42 177.2 202 47.0
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.5e-42 176.4 211 46.9
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.7e-42 175.3 201 47.3
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 1.0e-41 174.9 209 46.9
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.0e-41 174.9 200 47.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.0e-41 174.9 219 44.7
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 1.3e-41 174.5 200 46.5
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 2.2e-41 173.7 200 46.0
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 2.2e-41 173.7 211 46.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 2.9e-41 173.3 201 48.8
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.9e-41 173.3 200 47.5
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.9e-41 173.3 201 47.3
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.8e-41 172.9 219 47.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 5.0e-41 172.6 200 46.0
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 5.0e-41 172.6 201 46.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 5.0e-41 172.6 218 48.6
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 5.0e-41 172.6 205 46.8
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 8.5e-41 171.8 200 46.0
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 1.5e-40 171.0 201 46.3
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.5e-40 171.0 201 46.3
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.5e-40 171.0 201 47.3
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.9e-40 170.6 211 45.5
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.9e-40 170.6 201 46.3
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 3.2e-40 169.9 219 44.7
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 4.2e-40 169.5 200 45.5
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 4.2e-40 169.5 201 45.3
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 1.6e-39 167.5 204 45.1
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-39 167.2 201 45.8
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-39 167.2 201 45.8
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.4e-38 164.5 226 45.6
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 8.8e-38 161.8 201 45.8
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 1.2e-37 161.4 232 43.1
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.5e-37 158.7 220 45.9
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 9.8e-37 158.3 228 41.2
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.4e-35 154.5 163 47.2
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.4e-35 153.7 163 47.9
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 5.4e-35 152.5 160 48.8
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-34 151.4 200 44.0
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.2e-34 151.4 200 44.0
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.2e-34 151.4 193 44.6
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 1.6e-34 151.0 146 53.4
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.3e-33 147.1 220 40.9
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.9e-33 146.7 158 45.6
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 8.6e-33 145.2 200 42.0
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 2.5e-32 143.7 200 41.5
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 4.2e-32 142.9 188 44.7
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 7.2e-32 142.1 175 45.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 7.2e-32 142.1 175 45.1
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 6.1e-31 139.0 175 45.7
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 6.1e-31 139.0 175 45.7
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.1e-31 139.0 151 49.7
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.4e-30 137.9 202 43.6
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 1.2e-29 134.8 208 41.8
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.0e-29 134.0 158 42.4
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.8e-28 130.2 185 41.6
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 3.7e-28 129.8 204 39.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.1e-27 128.3 166 41.6
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.1e-27 126.7 166 42.2
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.1e-27 126.3 173 43.4
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 9.2e-27 125.2 136 44.1
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 9.2e-27 125.2 198 40.4
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.6e-26 124.4 173 42.8
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.9e-26 122.5 173 39.9
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 8.6e-25 118.6 171 45.6
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 5.6e-24 115.9 160 42.5
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.6e-10 71.2 163 33.1
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 3.6e-07 60.1 202 29.7
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 4.7e-07 59.7 84 44.0
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 4.7e-07 59.7 84 44.0


User provided reference genes

Program Settings