Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 1.7e-203 712.6 397 100.0
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 9.1e-117 424.5 333 74.5
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 8.5e-115 417.9 337 75.7
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 8.0e-113 411.4 333 71.5
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 4.0e-112 409.1 336 72.9
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 2.0e-103 380.2 309 68.6
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 7.8e-100 368.2 337 66.2
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 6.6e-99 365.2 338 62.7
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 1.4e-93 347.4 344 61.9
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.6e-92 344.0 345 63.2
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 8.3e-86 321.6 338 62.7
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.1e-85 321.2 314 60.8
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 7.1e-85 318.5 311 61.1
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 4.7e-81 305.8 317 58.7
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.1e-80 304.7 335 55.5
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 3.4e-79 299.7 313 58.1
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 1.7e-78 297.4 315 55.6
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 1.7e-78 297.4 309 57.9
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 2.2e-78 297.0 315 58.4
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 3.7e-78 296.2 307 58.0
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 8.3e-78 295.0 325 57.2
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 7.1e-77 292.0 310 55.5
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.2e-76 291.2 317 57.4
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.6e-76 290.8 312 56.1
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.3e-75 287.7 307 56.7
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 3.0e-75 286.6 319 58.0
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 3.9e-75 286.2 318 55.7
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 5.1e-75 285.8 313 55.3
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 6.6e-75 285.4 313 55.3
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 1.1e-74 284.6 308 57.1
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.1e-74 284.6 309 55.7
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.5e-74 284.3 309 55.7
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 2.5e-74 283.5 309 57.6
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 3.3e-74 283.1 307 56.4
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 3.3e-74 283.1 314 58.3
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 4.3e-74 282.7 315 55.6
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 4.3e-74 282.7 312 56.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 5.6e-74 282.3 310 57.7
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 7.3e-74 282.0 312 55.8
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 9.6e-74 281.6 350 57.1
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 9.6e-74 281.6 309 55.3
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 2.1e-73 280.4 309 55.3
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.8e-73 280.0 311 54.3
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 6.2e-73 278.9 309 55.0
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.4e-72 277.7 351 57.0
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 2.4e-72 276.9 309 56.6
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 3.1e-72 276.6 305 55.7
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 3.1e-72 276.6 309 55.0
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 6.8e-72 275.4 311 54.3
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 3.4e-71 273.1 311 56.9
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 1.3e-70 271.2 322 54.7
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 4.9e-70 269.2 320 55.3
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 2.1e-68 263.8 299 53.8
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.3e-67 260.4 314 53.5
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 1.1e-66 258.1 311 50.8
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 4.3e-66 256.1 313 54.0
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 5.6e-66 255.8 310 52.3
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 5.6e-66 255.8 322 51.9
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 6.2e-65 252.3 321 51.4
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 8.1e-65 251.9 309 54.4
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 2.6e-63 246.9 309 51.5
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 2.6e-63 246.9 406 43.3
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 4.4e-63 246.1 309 51.8
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 7.6e-63 245.4 308 52.6
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 4.9e-62 242.7 311 51.4
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 8.4e-62 241.9 311 52.7
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 8.4e-62 241.9 313 55.3
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 4.2e-61 239.6 329 48.9
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 5.4e-61 239.2 330 49.4
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 2.1e-60 237.3 323 47.7
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 6.0e-60 235.7 310 51.6
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 6.6e-59 232.3 318 48.1
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.3e-57 228.0 310 49.0
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 2.8e-57 226.9 317 49.8
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 4.8e-57 226.1 291 49.8
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 6.2e-57 225.7 312 48.1
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 1.7e-54 217.6 310 46.5
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 4.2e-53 213.0 295 50.5
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 5.4e-53 212.6 297 46.8
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 7.1e-53 212.2 318 45.0
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 4.6e-52 209.5 314 44.9
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 6.0e-52 209.1 313 46.3
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 3.9e-51 206.5 316 45.9
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 1.6e-49 201.1 312 44.6
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 1.6e-49 201.1 305 45.6
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.8e-49 200.3 287 46.7
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 8.1e-49 198.7 317 45.1
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 1.8e-48 197.6 309 45.3
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.8e-48 197.6 310 43.5
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 2.4e-48 197.2 316 44.0
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 5.3e-48 196.1 315 43.5
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.3e-48 196.1 289 46.0
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.2e-47 194.9 291 46.7
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 1.5e-47 194.5 312 44.6
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 3.4e-47 193.4 311 41.8
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-45 187.2 222 56.3
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.5e-45 187.2 289 45.0
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 1.2e-44 184.9 284 45.1
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 2.5e-42 177.2 312 45.2
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.3e-42 176.8 257 47.1
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.3e-41 174.9 167 61.7
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 9.3e-37 158.7 123 74.0
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.7e-34 149.4 325 38.2
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 1.6e-33 147.9 232 46.1
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 4.2e-29 133.3 127 58.3
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 5.1e-27 126.3 319 34.5
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 5.3e-24 116.3 133 50.4
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 6.9e-24 115.9 133 50.4
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.6e-23 114.0 85 67.1
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 5.9e-23 112.8 131 52.7
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.7e-23 112.5 137 49.6
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 1.8e-19 101.3 225 38.2
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.0e-18 97.8 127 49.6
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 5.7e-18 96.3 226 38.1
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.4e-18 95.9 127 47.2
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 9.1e-16 89.0 304 32.9
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 6.1e-12 76.3 77 57.1
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.4e-11 75.1 54 66.7
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 1.8e-11 74.7 319 27.9
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 5.7e-10 69.7 70 64.3
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.5e-10 69.3 54 66.7
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.1e-08 63.5 56 66.1
Dinv34035 Davidia involucrata HOM05D004844 ORTHO05D006036 1.6e-07 61.6 146 35.6
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.0e-06 58.9 47 66.0
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 1.7e-06 58.2 50 54.0
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.2e-06 57.8 93 39.8
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 2.9e-06 57.4 180 30.6


User provided reference genes

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