Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 8.7e-287 989.6 484 100.0
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.6e-280 968.8 484 97.3
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 9.6e-278 959.5 484 96.5
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 6.2e-277 956.8 484 95.5
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 6.2e-277 956.8 484 94.8
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 2.2e-274 948.3 484 94.4
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 2.9e-274 948.0 484 94.8
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 1.9e-273 945.3 484 94.6
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 4.2e-273 944.1 482 94.8
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.6e-272 942.2 484 94.0
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 3.3e-270 934.5 484 91.9
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 5.6e-270 933.7 484 92.1
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 2.1e-269 931.8 484 92.8
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 3.7e-269 931.0 484 92.4
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 6.2e-269 930.2 484 91.7
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 1.1e-268 929.5 484 91.9
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.4e-268 929.1 484 91.9
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.1e-268 927.9 484 90.5
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 3.1e-268 927.9 484 91.5
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 3.1e-268 927.9 493 92.1
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 4.0e-268 927.5 484 91.5
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 9.0e-268 926.4 484 91.5
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 9.0e-268 926.4 484 92.4
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.2e-267 926.0 481 91.9
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.5e-267 925.6 484 91.7
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.6e-267 924.9 484 91.5
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 4.5e-267 924.1 484 92.8
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 4.5e-267 924.1 484 91.7
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 7.6e-267 923.3 484 90.7
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.3e-266 922.5 485 91.5
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.7e-266 922.2 482 92.1
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.7e-266 922.2 484 90.3
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 2.9e-266 921.4 484 91.9
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 2.9e-266 921.4 484 91.1
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 3.8e-266 921.0 483 91.3
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.1e-265 919.5 484 91.1
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.1e-265 919.5 482 91.5
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.4e-265 919.1 484 91.3
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 2.5e-265 918.3 484 91.3
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 2.5e-265 918.3 484 91.1
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 4.2e-265 917.5 484 91.1
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 5.5e-265 917.1 481 91.7
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 7.1e-265 916.8 484 91.3
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 7.1e-265 916.8 484 91.3
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 7.1e-265 916.8 483 90.9
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 7.1e-265 916.8 481 91.3
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 7.1e-265 916.8 484 90.1
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 9.3e-265 916.4 477 91.8
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-264 916.0 484 91.3
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 1.2e-264 916.0 484 91.1
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 1.2e-264 916.0 483 90.7
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 1.2e-264 916.0 484 90.5
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 2.1e-264 915.2 484 90.3
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 2.7e-264 914.8 484 90.9
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 4.6e-264 914.1 484 90.7
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 4.6e-264 914.1 481 91.9
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 7.9e-264 913.3 482 90.9
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 7.9e-264 913.3 484 90.9
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 7.9e-264 913.3 481 91.7
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 7.9e-264 913.3 478 91.6
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 7.9e-264 913.3 484 90.7
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 91.1
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 90.9
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 90.7
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 1.3e-263 912.5 481 90.9
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.3e-263 912.5 489 90.4
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.3e-263 912.5 484 90.7
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 2.3e-263 911.8 484 90.3
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 3.0e-263 911.4 484 90.5
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.0e-263 911.4 484 90.7
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 3.9e-263 911.0 481 90.6
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 3.9e-263 911.0 481 90.6
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 5.1e-263 910.6 480 91.7
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 5.1e-263 910.6 481 90.9
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 5.1e-263 910.6 481 91.5
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 6.7e-263 910.2 483 89.6
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 8.7e-263 909.8 481 90.4
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 8.7e-263 909.8 481 90.4
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.9e-262 908.7 486 90.7
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.9e-262 908.7 484 91.1
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.5e-262 908.3 484 90.9
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 2.5e-262 908.3 477 90.8
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 5.7e-262 907.1 480 91.5
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.3e-261 906.0 485 90.3
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.6e-261 905.6 480 90.8
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 3.7e-261 904.4 480 90.0
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 3.7e-261 904.4 453 94.9
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 4.8e-261 904.0 485 90.1
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 6.3e-261 903.7 486 89.7
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 8.2e-261 903.3 484 90.3
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 3.1e-260 901.4 484 90.3
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 3.1e-260 901.4 474 91.1
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 5.3e-260 900.6 481 90.4
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 6.9e-260 900.2 481 89.6
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 2.6e-259 898.3 481 90.2
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 3.4e-259 897.9 482 88.6
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 7.6e-259 896.7 476 90.8
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 5.0e-258 894.0 480 89.2
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 6.5e-258 893.6 481 89.2
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 8.5e-258 893.3 481 89.8
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.1e-257 892.9 481 88.4
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.1e-257 892.9 480 89.0
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 1.1e-257 892.9 486 90.1
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 2.5e-257 891.7 475 90.9
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 4.2e-257 891.0 460 93.0
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 3.6e-256 887.9 479 89.4
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 4.8e-253 877.5 457 92.1
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.2e-248 862.8 451 90.7
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 3.0e-247 858.2 460 89.8
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.9e-247 857.8 475 87.2
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.3e-245 852.8 478 86.6
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 1.7e-245 852.4 480 84.4
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 3.4e-243 844.7 430 90.2
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 5.9e-243 844.0 439 89.7
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 7.2e-241 837.0 406 96.8
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 3.6e-240 834.7 457 85.6
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 4.7e-240 834.3 408 95.6
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 3.9e-239 831.2 434 88.5
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 1.5e-238 829.3 406 95.1
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 5.7e-238 827.4 405 95.1
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 7.7e-235 817.0 404 94.6
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 4.4e-230 801.2 433 85.9
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 7.2e-225 783.9 482 79.7
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 6.1e-224 780.8 381 96.1
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 2.0e-222 775.8 420 84.5
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 5.4e-220 767.7 483 77.4
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 1.2e-219 766.5 427 82.7
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 2.6e-214 748.8 392 90.8
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.7e-210 736.1 390 91.5
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 9.5e-209 730.3 481 76.3
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.1e-192 676.0 346 92.8
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 2.3e-191 672.5 366 87.7
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 1.1e-183 647.1 395 74.2
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.2e-183 644.8 482 70.1
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 7.8e-179 630.9 313 94.6
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.8e-174 614.8 484 67.8
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 9.9e-174 614.0 482 67.8
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 6.0e-171 604.7 482 67.2
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 6.9e-167 591.3 331 87.3
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.8e-149 532.3 279 90.0
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.0e-141 507.7 351 72.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 1.0e-125 454.5 278 74.5
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 4.7e-115 419.1 203 96.6
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 4.4e-97 359.4 180 91.1
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 7.5e-97 358.6 191 87.4
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 7.3e-92 342.0 170 94.1
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.3e-90 337.0 171 91.2
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 7.8e-86 322.0 481 42.6
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 5.6e-76 289.3 146 91.1
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 4.6e-70 269.6 146 88.4
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 6.2e-67 259.2 161 82.0
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.3e-64 251.5 125 95.2
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 7.1e-63 245.7 127 86.6
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 1.8e-58 231.1 144 81.2
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 2.1e-54 217.6 284 42.6
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 4.3e-52 209.9 100 96.0
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.8e-50 204.5 102 94.1
Actinidia09669 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.5e-49 201.4 124 81.5
Potri.008G177801 Populus trichocarpa HOM05D003867 ORTHO05D004593 2.3e-37 161.0 105 72.4
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 1.3e-35 155.2 102 76.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 1.4e-34 151.8 77 93.5
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 1.4e-34 151.8 77 93.5
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 5.1e-29 133.3 156 45.5
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.5e-28 131.7 69 92.8
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.9e-28 131.3 71 87.3
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 5.7e-28 129.8 70 85.7
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 90.8
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.1e-26 125.6 65 90.8
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.4e-25 120.6 66 84.8
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 7.7e-25 119.4 66 83.3
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.7e-22 110.9 83 66.3
GSVIVG01013345001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.9e-21 107.1 67 67.2
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 8.8e-21 105.9 67 73.1
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-17 95.5 48 91.7
Hund25436 Selenicereus undatus HOM05D000424 ORTHO05D008586 8.5e-16 89.4 168 34.5
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 2.0e-12 78.2 71 54.9
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 7.4e-12 76.3 72 54.2
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 1.7e-11 75.1 72 54.2
Nitab4.5_0027010g0010 Nicotiana tabacum HOM05D003867 ORTHO05D004593 8.2e-11 72.8 59 78.0
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 7.7e-09 66.2 61 55.7
Nitab4.5_0002184g0100 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.9e-07 61.6 59 59.3
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 8.0e-06 56.2 38 68.4


User provided reference genes

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