Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 1.6e-250 869.0 448 100.0
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 2.0e-213 745.7 448 85.3
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 3.8e-212 741.5 448 85.3
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 7.4e-208 727.2 448 83.5
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 3.8e-204 714.9 447 81.4
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 5.5e-203 711.1 447 80.5
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 1.5e-200 703.0 448 79.7
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 4.8e-199 698.0 447 79.6
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 2.6e-197 692.2 447 78.1
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 3.3e-192 675.2 448 77.2
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 2.4e-190 669.1 444 76.4
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.4e-182 642.5 452 73.9
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.4e-177 626.7 480 69.0
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 5.2e-177 624.8 488 68.2
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 2.8e-175 619.0 447 69.8
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 3.7e-175 618.6 446 69.3
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 3.7e-175 618.6 443 69.1
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 6.3e-175 617.8 394 79.7
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 2.0e-173 612.8 442 68.8
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 3.5e-173 612.1 446 68.4
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 3.8e-172 608.6 443 68.2
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 2.5e-171 605.9 447 65.3
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 1.2e-170 603.6 443 67.3
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 2.1e-170 602.8 443 67.5
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.4e-169 600.1 444 68.7
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 1.4e-169 600.1 448 65.6
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 2.3e-169 599.4 442 66.5
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 6.8e-169 597.8 443 67.3
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 5.8e-168 594.7 443 66.8
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.3e-167 593.6 443 65.9
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 3.7e-167 592.0 444 67.1
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.7e-167 592.0 442 66.3
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 1.6e-165 586.6 442 64.5
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 1.6e-165 586.6 442 64.7
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 4.6e-165 585.1 442 66.3
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.3e-164 583.6 442 64.3
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.9e-164 582.0 444 66.4
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 1.5e-163 580.1 442 67.0
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.3e-163 578.6 444 66.2
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 5.6e-163 578.2 443 65.0
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 1.2e-162 577.0 441 64.6
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.6e-162 576.6 442 63.8
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 2.1e-162 576.2 443 63.9
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.8e-161 573.2 443 64.6
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 3.1e-161 572.4 456 64.3
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 4.0e-161 572.0 451 64.3
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 2.0e-160 569.7 442 64.5
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 2.6e-160 569.3 442 63.6
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 3.4e-160 568.9 446 63.2
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.7e-159 566.6 442 64.9
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 3.7e-159 565.5 443 64.6
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 4.9e-159 565.1 447 63.8
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.4e-158 563.5 446 62.6
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 3.2e-158 562.4 446 62.8
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 9.2e-158 560.8 446 62.3
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 9.2e-158 560.8 442 62.0
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.5e-157 558.9 444 63.1
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 4.6e-157 558.5 443 64.1
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 6.0e-157 558.1 443 63.4
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 6.0e-157 558.1 454 62.1
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 7.8e-157 557.8 442 62.9
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 7.8e-157 557.8 443 63.9
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 3.0e-156 555.8 442 62.2
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 5.1e-156 555.1 442 63.1
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 8.6e-156 554.3 443 63.4
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 1.5e-155 553.5 442 62.7
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 2.5e-155 552.7 444 62.6
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 6.2e-154 548.1 442 62.7
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 1.8e-153 546.6 442 61.3
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 5.2e-153 545.0 442 62.0
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 1.2e-152 543.9 428 63.3
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 1.9e-150 536.6 397 66.8
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 2.4e-150 536.2 444 61.5
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 2.7e-149 532.7 442 60.0
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 3.5e-149 532.3 445 60.7
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.0e-148 530.8 444 60.6
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 2.3e-148 529.6 443 60.7
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 3.9e-148 528.9 446 60.8
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 1.9e-147 526.6 443 60.9
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 4.3e-147 525.4 443 60.7
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 4.7e-146 521.9 442 58.1
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 6.2e-146 521.5 444 59.5
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 6.8e-145 518.1 443 59.8
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 6.8e-145 518.1 443 59.4
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 1.7e-143 513.5 443 59.1
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 3.8e-143 512.3 443 58.5
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.2e-142 509.2 449 57.7
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 5.4e-142 508.4 442 57.5
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 7.1e-142 508.1 443 59.8
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.0e-140 504.2 442 58.4
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 6.6e-140 501.5 442 57.0
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.1e-139 500.7 354 68.9
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 5.3e-137 491.9 443 57.3
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 1.4e-134 483.8 446 56.3
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.1e-126 457.6 266 85.7
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 1.2e-117 427.6 443 52.4
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 5.1e-116 422.2 446 53.1
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 6.7e-116 421.8 448 49.1
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 5.6e-115 418.7 448 49.3
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.8e-113 413.7 448 49.3
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.1e-113 412.9 443 51.5
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.2e-101 374.4 458 45.2
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.4e-100 370.9 322 58.7
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 5.0e-87 325.9 443 43.3
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 3.2e-86 323.2 267 61.4
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 3.8e-79 299.7 207 70.0
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 2.0e-64 250.8 261 49.8
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.0e-59 234.2 265 45.3
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.2e-57 226.9 192 61.5
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.3e-55 220.7 181 60.2
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 4.6e-48 196.4 474 29.5
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.5e-46 191.4 141 66.7
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 8.6e-39 165.6 585 23.4
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.0e-31 142.1 107 66.4
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.3e-26 125.2 114 53.5
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 4.6e-24 116.7 98 60.2
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.5e-22 110.9 96 58.3
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 3.3e-22 110.5 196 30.1
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 1.3e-21 108.6 113 54.0
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 1.4e-20 105.1 108 54.6
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.9e-17 94.7 115 50.4
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 7.1e-17 92.8 439 22.6
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 9.3e-17 92.4 92 54.3
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 4.6e-16 90.1 92 54.3
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 1.0e-15 89.0 65 66.2
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 3.3e-14 84.0 69 62.3
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.4e-12 78.6 207 29.5
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 5.6e-06 56.6 93 43.0
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 9.6e-06 55.8 58 48.3


User provided reference genes

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