Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 2.8e-88 328.6 166 100.0
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 4.0e-82 308.1 166 92.2
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 9.5e-76 287.0 166 84.3
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 1.5e-73 279.6 166 84.3
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 2.0e-73 279.3 165 84.2
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 1.7e-72 276.2 166 83.1
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 8.3e-72 273.9 160 85.0
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.1e-71 273.5 158 86.1
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 9.2e-71 270.4 158 83.5
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.1e-70 269.2 159 84.3
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 2.1e-70 269.2 159 84.3
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 6.0e-70 267.7 161 78.3
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 7.8e-70 267.3 156 83.3
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.0e-69 266.9 156 85.9
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 1.7e-69 266.2 158 82.3
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 2.3e-69 265.8 160 80.6
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 2.3e-69 265.8 160 82.5
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 3.9e-69 265.0 161 82.6
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 5.1e-69 264.6 158 82.3
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 5.1e-69 264.6 160 80.0
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 6.6e-69 264.2 158 82.3
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.1e-68 263.5 156 82.1
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.1e-68 263.5 156 80.8
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.1e-68 263.5 156 80.8
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.1e-68 263.5 156 81.4
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 1.5e-68 263.1 158 83.5
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 1.5e-68 263.1 160 80.6
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 2.5e-68 262.3 154 81.8
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 3.3e-68 261.9 158 81.6
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 5.6e-68 261.2 159 81.1
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 2.8e-67 258.8 150 84.0
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 3.6e-67 258.5 155 81.3
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 4.7e-67 258.1 156 80.8
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 6.2e-67 257.7 161 77.6
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 6.2e-67 257.7 158 80.4
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 8.1e-67 257.3 156 82.1
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 1.1e-66 256.9 160 78.8
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 1.1e-66 256.9 163 77.9
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.1e-66 256.9 160 78.8
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.1e-66 256.9 160 78.8
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.8e-66 256.1 165 75.8
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 1.8e-66 256.1 161 77.0
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 3.1e-66 255.4 164 78.0
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 4.0e-66 255.0 160 76.9
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 8.9e-66 253.8 150 84.0
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 2.0e-65 252.7 151 82.1
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 2.0e-65 252.7 160 75.0
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 3.4e-65 251.9 148 83.1
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 4.4e-65 251.5 160 77.5
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 9.9e-65 250.4 159 76.1
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 2.2e-64 249.2 161 75.2
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 2.9e-64 248.8 154 77.9
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 3.7e-64 248.4 157 80.3
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 3.7e-64 248.4 157 80.3
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 6.4e-64 247.7 158 75.3
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 6.4e-64 247.7 156 77.6
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 8.3e-64 247.3 159 75.5
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 1.1e-63 246.9 151 80.8
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 1.4e-63 246.5 147 82.3
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.9e-63 246.1 157 77.7
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 1.9e-63 246.1 157 77.7
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 3.2e-63 245.4 160 78.1
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 3.2e-63 245.4 149 76.5
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 4.1e-63 245.0 163 74.2
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 4.1e-63 245.0 157 77.7
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 4.1e-63 245.0 155 76.8
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 4.1e-63 245.0 154 77.9
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 5.4e-63 244.6 157 76.4
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 5.4e-63 244.6 157 78.3
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 7.1e-63 244.2 157 76.4
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 7.1e-63 244.2 157 77.7
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 7.1e-63 244.2 157 78.3
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 7.1e-63 244.2 156 75.6
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 9.2e-63 243.8 157 77.7
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.2e-62 243.4 159 71.7
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 1.2e-62 243.4 157 74.5
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.6e-62 243.0 150 78.7
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 4.6e-62 241.5 150 76.7
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 4.6e-62 241.5 157 75.8
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 4.6e-62 241.5 157 75.8
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.7e-61 239.6 157 74.5
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 2.3e-61 239.2 154 74.0
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 5.1e-61 238.0 157 73.9
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 2.5e-60 235.7 147 79.6
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.2e-59 233.4 190 65.3
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 1.6e-59 233.0 156 70.5
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.1e-59 232.6 141 80.9
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.8e-58 229.6 150 75.3
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 8.9e-58 227.3 180 64.4
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.2e-57 226.9 144 75.7
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 1.5e-57 226.5 156 69.2
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 2.0e-57 226.1 157 69.4
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.4e-55 219.9 157 70.1
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 5.4e-55 218.0 178 64.6
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 1.5e-52 209.9 154 66.9
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 1.8e-50 203.0 154 62.3
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 5.8e-49 198.0 170 61.8
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 2.3e-45 186.0 119 79.0
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 2.3e-45 186.0 146 60.3
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 3.3e-44 182.2 112 79.5
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 2.4e-42 176.0 91 91.2
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 4.0e-42 175.3 91 89.0
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 5.8e-41 171.4 153 55.6
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.4e-39 166.0 113 72.6
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 2.4e-39 166.0 147 57.8
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 1.2e-38 163.7 263 41.8
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.5e-36 156.8 160 55.0
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 1.9e-36 156.4 157 49.7
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.6e-35 153.3 156 51.9
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 6.9e-34 147.9 154 48.7
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 2.3e-29 132.9 84 77.4
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 4.3e-28 128.6 140 44.3
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 5.5e-23 111.7 76 75.0
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.7e-16 90.1 69 60.9
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.9e-16 89.4 88 53.4
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 1.4e-15 87.0 64 67.2
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 4.6e-14 82.0 49 75.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 1.0e-13 80.9 55 72.7
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 3.9e-13 79.0 45 82.2
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 8.2e-11 71.2 149 33.6
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 9.1e-10 67.8 37 86.5
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 4.5e-09 65.5 37 83.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.7e-08 63.5 64 56.2


User provided reference genes

Program Settings