Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25081 Trifolium pratense HOM05D000034 ORTHO05D000277 1.9e-133 479.2 239 100.0
TPR.G39652 Trifolium pratense HOM05D000034 ORTHO05D000277 2.7e-116 422.2 288 77.1
TPR.G35402 Trifolium pratense HOM05D000034 ORTHO05D000277 1.4e-83 313.5 178 90.4
Lj5g0006139 Lotus japonicus HOM05D000034 ORTHO05D000277 6.4e-65 251.5 290 47.9
Medtr7g094990 Medicago truncatula HOM05D000034 ORTHO05D000277 3.9e-62 242.3 179 71.5
Lj1g0019892 Lotus japonicus HOM05D000034 ORTHO05D000277 8.3e-57 224.6 290 44.8
TPR.G36703 Trifolium pratense HOM05D000034 ORTHO05D000277 3.0e-54 216.1 131 89.3
Lj1g0021510 Lotus japonicus HOM05D000034 ORTHO05D000277 4.7e-44 182.2 179 53.1
Lj5g0001459 Lotus japonicus HOM05D000034 ORTHO05D000277 1.8e-35 153.7 197 46.2
TPR.G18486 Trifolium pratense HOM05D000034 ORTHO05D000277 4.3e-29 132.5 67 91.0
TPR.G16022 Trifolium pratense HOM05D000034 ORTHO05D000277 6.2e-28 128.6 91 75.8
TPR.G5979 Trifolium pratense HOM05D002233 ORTHO05D002299 8.1e-28 128.3 63 93.7
TPR.G18194 Trifolium pratense HOM05D000034 ORTHO05D000277 3.8e-25 119.4 65 87.7
LjContig00357g0019659 Lotus japonicus HOM05D000034 ORTHO05D000277 8.4e-25 118.2 199 40.2
Hma1.2p1_0489F.1_g164000 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 7.4e-21 105.1 283 28.6
TWI59G1350 Tripterygium wilfordii HOM05D000034 ORTHO05D000277 1.6e-20 104.0 303 29.4
Hma1.2p1_0664F.1_g199003 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.9e-19 98.6 243 30.5
Hma1.2p1_0035F.1_g021910 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.5e-16 90.1 277 25.3
Hma1.2p1_0286F.1_g113985 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.2e-16 89.4 285 24.6
Hma1.2p1_0127F.1_g059736 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.3e-16 88.2 285 24.6
Hma1.2p1_0165F.1_g073390 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.3e-16 88.2 285 26.0
Hma1.2p1_0276F.1_g111440 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.6e-15 85.9 285 24.2
Hma1.2p1_0354F.1_g133450 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.0e-15 85.5 290 24.5
Hma1.2p1_0423F.1_g150230 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 6.0e-15 85.5 246 28.5
Hma1.2p1_0081F.1_g042220 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 7.9e-15 85.1 251 27.9
Hma1.2p1_0746F.1_g212360 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 3.0e-14 83.2 274 25.5
Hma1.2p1_0846F.1_g227800 Hydrangea macrophylla HOM05D000454 ORTHO05D000591 3.0e-14 83.2 274 25.5
Psat5g256200 Pisum sativum HOM05D000034 ORTHO05D000277 1.1e-13 81.3 142 38.7
Psat5g256240 Pisum sativum HOM05D000034 ORTHO05D000277 1.1e-13 81.3 117 43.6
CSS0036595 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 5.7e-13 79.0 286 23.4
TPR.G10036 Trifolium pratense HOM05D000085 ORTHO05D000274 7.4e-13 78.6 52 73.1
FAN20G0414 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.8e-12 76.6 237 27.4
Atru.chr6.1585 Acer truncatum HOM05D000034 ORTHO05D000277 3.1e-11 73.2 268 25.0
FAN12G3067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.1e-11 73.2 270 25.6
Medtr1g041715 Medicago truncatula HOM05D000034 ORTHO05D000277 4.1e-11 72.8 75 56.0
FvH4_7g00320 Fragaria vesca HOM05D000034 ORTHO05D000277 1.2e-10 71.2 266 24.8
Lj5g0023821 Lotus japonicus HOM05D000102 ORTHO05D000277 1.2e-10 71.2 66 56.1
PGR142G3826 Punica granatum HOM05D000034 ORTHO05D000277 1.2e-10 71.2 281 26.0
Dinv02446 Davidia involucrata HOM05D000034 ORTHO05D000277 1.5e-10 70.9 271 23.6
Dinv07784 Davidia involucrata HOM05D000034 ORTHO05D000277 1.5e-10 70.9 116 40.5
Actinidia26110 Actinidia chinensis HOM05D000034 ORTHO05D000277 2.0e-10 70.5 178 27.0
CANSAT11G0741 Cannabis sativa HOM05D000034 ORTHO05D000277 2.0e-10 70.5 181 28.7
FvH4_2g04031 Fragaria vesca HOM05D000034 ORTHO05D000277 2.6e-10 70.1 275 25.5
RcHm_v2.0_Chr1g0373591 Rosa chinensis HOM05D000034 ORTHO05D000277 2.6e-10 70.1 287 26.1
Actinidia06690 Actinidia chinensis HOM05D000034 ORTHO05D000277 4.5e-10 69.3 287 24.0
CSS0036649 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.9e-10 68.9 294 24.1
CSS0047009 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 5.9e-10 68.9 294 24.1
CSS0024362 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 7.7e-10 68.6 272 23.9
CSS0033072 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 7.7e-10 68.6 272 23.9
Atru.chr2.2599 Acer truncatum HOM05D000034 ORTHO05D000277 1.0e-09 68.2 181 29.8
CSS0010302 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.0e-09 68.2 275 24.0
CSS0015669 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 1.0e-09 68.2 272 23.9
Hma1.2p1_1104F.1_g257520 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 1.0e-09 68.2 267 26.6
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 1.3e-09 67.8 178 26.4
Hma1.2p1_0744F.1_g211850 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.3e-09 67.8 291 26.5
CANSAT64G1464 Cannabis sativa HOM05D000034 ORTHO05D000277 1.7e-09 67.4 151 30.5
Rhsim05G0045400 Rhododendron simsii HOM05D000034 ORTHO05D000277 1.7e-09 67.4 239 24.7
Atru.chr12.953 Acer truncatum HOM05D001651 ORTHO05D000277 2.9e-09 66.6 261 22.2
CANSAT21G0305 Cannabis sativa HOM05D000034 ORTHO05D000277 2.9e-09 66.6 282 24.8
FvH4_4g09541 Fragaria vesca HOM05D000034 ORTHO05D000277 2.9e-09 66.6 171 31.0
Hma1.2p1_0170F.1_g074960 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 2.9e-09 66.6 291 26.5
arahy.Tifrunner.gnm1.ann1.CQ6X1C Arachis hypogaea HOM05D000034 ORTHO05D000277 5.0e-09 65.9 124 33.9
CANSAT25G0805 Cannabis sativa HOM05D000034 ORTHO05D000277 5.0e-09 65.9 179 29.1
Dinv18323 Davidia involucrata HOM05D000034 ORTHO05D000277 5.0e-09 65.9 143 31.5
CSS0042392 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 6.5e-09 65.5 272 23.5
FvH4_1g18411 Fragaria vesca HOM05D000034 ORTHO05D000277 6.5e-09 65.5 287 23.3
FAN24G2067 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.5e-09 65.5 284 23.2
arahy.Tifrunner.gnm1.ann1.69CSDW Arachis hypogaea HOM05D000034 ORTHO05D000037 8.5e-09 65.1 260 24.6
Hma1.2p1_1277F.1_g272250 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 8.5e-09 65.1 291 25.8
DCAR_017700 Daucus carota HOM05D000034 ORTHO05D000277 1.4e-08 64.3 285 27.7
FAN28G1917 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.4e-08 64.3 287 24.4
arahy.Tifrunner.gnm1.ann1.M5SPPH Arachis hypogaea HOM05D000034 ORTHO05D000037 1.9e-08 63.9 158 28.5
Atru.chr2.3198 Acer truncatum HOM05D001651 ORTHO05D000277 2.5e-08 63.5 261 21.8
CSS0008044 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 2.5e-08 63.5 270 23.0
Rhsim04G0059300 Rhododendron simsii HOM05D000034 ORTHO05D000277 2.5e-08 63.5 202 26.7
arahy.Tifrunner.gnm1.ann1.L1UJFX Arachis hypogaea HOM05D000034 ORTHO05D000277 3.2e-08 63.2 225 26.2
CSS0016960 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.2e-08 62.8 172 29.7
CSS0031455 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000277 4.2e-08 62.8 274 23.7
DCAR_009785 Daucus carota HOM05D001651 ORTHO05D000277 4.2e-08 62.8 262 24.0
DCAR_015799 Daucus carota HOM05D001651 ORTHO05D000277 4.2e-08 62.8 262 24.0
Hma1.2p1_0317F.1_g123710 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 4.2e-08 62.8 156 28.2
Hma1.2p1_0386F.1_g141750 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 7.2e-08 62.0 268 26.5
arahy.Tifrunner.gnm1.ann1.Z43E0S Arachis hypogaea HOM05D000034 ORTHO05D000277 9.4e-08 61.6 231 26.8
Hma1.2p1_0122F.1_g057640 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 9.4e-08 61.6 241 25.3
Ah.00g001310 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.2e-07 61.2 290 22.8
Ah.15g094850 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.2e-07 61.2 290 22.8
arahy.Tifrunner.gnm1.ann1.9S1ZG3 Arachis hypogaea HOM05D000034 ORTHO05D000277 1.2e-07 61.2 260 24.2
arahy.Tifrunner.gnm1.ann1.M8QAL3 Arachis hypogaea HOM05D000034 ORTHO05D000277 1.2e-07 61.2 258 24.4
Hma1.2p1_2091F.1_g313860 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.2e-07 61.2 274 24.8
arahy.Tifrunner.gnm1.ann1.CRLJ3J Arachis hypogaea HOM05D000034 ORTHO05D000277 1.6e-07 60.8 258 24.0
arahy.Tifrunner.gnm1.ann1.L5W46K Arachis hypogaea HOM05D000034 ORTHO05D000277 1.6e-07 60.8 105 33.3
PSO832G0305 Papaver somniferum HOM05D000034 ORTHO05D000037 1.6e-07 60.8 251 26.3
Dinv26538 Davidia involucrata HOM05D000034 ORTHO05D000277 2.1e-07 60.5 168 29.8
arahy.Tifrunner.gnm1.ann1.D4DCSE Arachis hypogaea HOM05D000034 ORTHO05D000277 2.7e-07 60.1 128 28.9
COL.COLO4_16328 Corchorus olitorius HOM05D011723 ORTHO05D000277 2.7e-07 60.1 77 39.0
FAN25G0710 Fragaria x ananassa HOM05D000034 ORTHO05D000277 2.7e-07 60.1 287 24.0
arahy.Tifrunner.gnm1.ann1.76BEP4 Arachis hypogaea HOM05D000034 ORTHO05D000277 3.6e-07 59.7 153 28.8
arahy.Tifrunner.gnm1.ann1.DT8XIN Arachis hypogaea HOM05D000034 ORTHO05D000037 3.6e-07 59.7 249 24.1
FvH4_2g07610 Fragaria vesca HOM05D000034 ORTHO05D000277 3.6e-07 59.7 183 26.8
vmacro06986 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 3.6e-07 59.7 277 22.4
arahy.Tifrunner.gnm1.ann1.F88CFK Arachis hypogaea HOM05D000034 ORTHO05D000277 4.6e-07 59.3 221 25.3
arahy.Tifrunner.gnm1.ann1.HL67T0 Arachis hypogaea HOM05D000034 ORTHO05D000277 6.1e-07 58.9 152 28.3
AUR62025908 Chenopodium quinoa HOM05D000034 ORTHO05D000277 7.9e-07 58.5 145 29.7
Hma1.2p1_1184F.1_g264860 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 7.9e-07 58.5 162 27.8
Ah.02g122110 Amaranthus hybridus HOM05D000034 ORTHO05D000277 1.0e-06 58.2 290 22.4
arahy.Tifrunner.gnm1.ann1.5EU6WB Arachis hypogaea HOM05D000034 ORTHO05D000277 1.0e-06 58.2 153 28.1
CANSAT01G2074 Cannabis sativa HOM05D000034 ORTHO05D000277 1.0e-06 58.2 248 25.4
PSO017G1737 Papaver somniferum HOM05D000034 ORTHO05D000037 1.0e-06 58.2 311 22.8
Rhsim10G0122700 Rhododendron simsii HOM05D000034 ORTHO05D000277 1.0e-06 58.2 270 23.3
Dinv06479 Davidia involucrata HOM05D000034 ORTHO05D000277 1.4e-06 57.8 127 35.4
FAN25G0666 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.4e-06 57.8 274 24.5
DCAR_018898 Daucus carota HOM05D001651 ORTHO05D000277 1.8e-06 57.4 255 22.4
FAN28G1335 Fragaria x ananassa HOM05D000034 ORTHO05D000277 1.8e-06 57.4 192 26.6
Hma1.2p1_1398F.1_g280820 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 1.8e-06 57.4 199 30.7
Thecc.05G132700 Theobroma cacao HOM05D001651 ORTHO05D000277 1.8e-06 57.4 155 29.7
arahy.Tifrunner.gnm1.ann1.5ZVC70 Arachis hypogaea HOM05D000034 ORTHO05D000277 2.3e-06 57.0 258 22.9
EL10Ac9g22401 Beta vulgaris HOM05D000034 ORTHO05D000037 2.3e-06 57.0 285 21.4
AUR62034137 Chenopodium quinoa HOM05D014981 ORTHO05D017491 2.3e-06 57.0 187 29.4
Hma1.2p1_0388F.1_g142330 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.3e-06 57.0 250 22.0
RcHm_v2.0_Chr1g0343671 Rosa chinensis HOM05D000034 ORTHO05D000277 2.3e-06 57.0 158 27.2
RcHm_v2.0_Chr5g0072391 Rosa chinensis HOM05D000034 ORTHO05D000277 2.3e-06 57.0 158 27.2
vmacro15090 Vaccinium macrocarpon HOM05D000034 ORTHO05D000277 2.3e-06 57.0 279 21.5
arahy.Tifrunner.gnm1.ann1.LXUT7L Arachis hypogaea HOM05D000034 ORTHO05D000277 3.0e-06 56.6 135 29.6
arahy.Tifrunner.gnm1.ann1.M2TA6F Arachis hypogaea HOM05D000034 ORTHO05D000037 3.0e-06 56.6 255 23.1
Hma1.2p1_2091F.1_g313856 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 3.0e-06 56.6 155 31.0
arahy.Tifrunner.gnm1.ann1.ACQ4FZ Arachis hypogaea HOM05D000034 ORTHO05D000277 3.9e-06 56.2 249 23.7
arahy.Tifrunner.gnm1.ann1.G04LPI Arachis hypogaea HOM05D000034 ORTHO05D000277 3.9e-06 56.2 158 27.8
CANSAT64G1414 Cannabis sativa HOM05D001651 ORTHO05D000277 3.9e-06 56.2 271 21.0
FAN08G2713 Fragaria x ananassa HOM05D000034 ORTHO05D000277 3.9e-06 56.2 154 27.9
PSO478G0310 Papaver somniferum HOM05D000034 ORTHO05D000277 3.9e-06 56.2 278 24.1
Hma1.2p1_0529F.1_g173280 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.1e-06 55.8 185 30.3
Hma1.2p1_2109F.1_g314220 Hydrangea macrophylla HOM05D000034 ORTHO05D000277 5.1e-06 55.8 162 33.3
arahy.Tifrunner.gnm1.ann1.W414Q0 Arachis hypogaea HOM05D000034 ORTHO05D000277 6.7e-06 55.5 144 28.5
EL10Ac8g19887 Beta vulgaris HOM05D000034 ORTHO05D000037 6.7e-06 55.5 263 23.2
Dinv07862 Davidia involucrata HOM05D000034 ORTHO05D000277 6.7e-06 55.5 185 27.0
FAN26G0732 Fragaria x ananassa HOM05D000034 ORTHO05D000277 6.7e-06 55.5 270 23.7
CSS0044841 Camellia sinensis var. sinensis HOM05D000034 ORTHO05D000037 8.8e-06 55.1 128 31.2
CANSAT80G1436 Cannabis sativa HOM05D001651 ORTHO05D000277 8.8e-06 55.1 271 21.4


User provided reference genes

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