Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.6e-194 682.6 347 100.0
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 5.8e-160 567.8 344 82.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 9.6e-155 550.4 345 82.6
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.5e-136 490.0 345 71.6
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 4.5e-136 488.4 345 72.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.0e-135 487.3 343 72.3
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.2e-134 482.3 345 70.7
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.8e-129 466.5 345 69.6
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 5.0e-127 458.4 345 66.1
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.1e-126 457.2 345 66.7
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 9.7e-115 417.5 348 61.8
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.3e-114 417.2 348 62.1
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 6.3e-114 414.8 347 62.2
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 6.3e-114 414.8 349 62.2
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.8e-113 413.3 349 62.2
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.8e-113 413.3 350 61.4
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.4e-113 412.9 347 61.7
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 4.5e-112 408.7 346 61.3
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.7e-112 407.9 346 61.0
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.0e-111 407.5 346 61.0
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.0e-111 407.5 350 62.0
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.3e-111 407.1 350 60.6
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.2e-111 406.4 349 61.9
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 3.8e-111 405.6 347 59.9
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.9e-110 403.3 349 61.9
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.9e-110 403.3 351 61.0
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.9e-110 403.3 349 63.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 4.2e-110 402.1 347 60.8
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.2e-109 400.6 347 60.5
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.1e-109 399.8 352 61.1
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 3.6e-109 399.1 350 59.7
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.8e-108 396.7 349 59.3
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 5.2e-108 395.2 349 61.9
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.0e-107 393.3 349 58.7
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 2.0e-107 393.3 349 58.7
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 2.0e-107 393.3 348 58.6
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.0e-107 393.3 350 60.0
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 4.4e-107 392.1 346 59.5
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.7e-107 391.7 343 59.5
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 2.8e-106 389.4 348 60.1
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 3.7e-106 389.0 348 57.5
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 4.8e-106 388.7 349 59.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.8e-106 388.7 343 58.9
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 1.1e-105 387.5 346 59.2
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 5.4e-105 385.2 349 58.5
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 9.1e-105 384.4 348 58.9
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.9e-104 381.7 351 59.8
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.3e-103 380.6 350 59.7
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.3e-103 379.8 351 57.8
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 2.3e-103 379.8 347 57.9
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 2.3e-103 379.8 349 58.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 5.5e-102 375.2 352 57.4
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 9.5e-102 374.4 346 57.8
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.6e-101 373.6 346 57.8
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.1e-101 373.2 315 61.9
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.4e-100 370.5 245 78.0
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.4e-100 370.5 343 57.4
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 1.8e-100 370.2 350 57.1
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.2e-100 368.6 324 59.9
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.2e-99 367.5 324 59.6
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 5.7e-99 365.2 475 46.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.7e-98 363.6 324 60.2
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 2.8e-98 362.8 351 56.4
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 2.4e-97 359.8 344 56.1
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 5.4e-97 358.6 343 57.4
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 9.2e-97 357.8 345 55.9
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.0e-95 354.4 379 52.2
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.7e-95 353.6 350 53.4
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 5.0e-95 352.1 351 56.4
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 6.6e-95 351.7 331 55.6
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.3e-94 349.4 350 53.1
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.1e-93 346.7 344 57.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.1e-93 346.7 347 51.6
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 2.1e-93 346.7 376 51.1
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 4.7e-93 345.5 315 57.5
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 1.4e-92 344.0 315 57.8
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.4e-92 344.0 410 49.3
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 8.9e-92 341.3 315 57.1
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.0e-91 340.1 314 55.7
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.0e-91 340.1 314 55.7
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.9e-90 336.3 350 53.4
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 4.9e-90 335.5 346 52.9
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 6.4e-90 335.1 321 56.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 8.3e-90 334.7 352 53.1
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.1e-89 334.3 348 52.9
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 5.4e-89 332.0 350 50.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 5.4e-89 332.0 320 53.8
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 5.4e-89 332.0 350 53.1
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 7.0e-89 331.6 352 52.3
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 9.2e-89 331.3 348 51.4
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 1.2e-88 330.9 341 52.5
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 1.6e-88 330.5 351 52.1
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.8e-88 328.2 311 55.9
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.0e-87 327.8 344 50.6
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.0e-87 327.8 344 50.6
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.3e-87 327.4 349 52.4
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 2.3e-87 326.6 346 50.9
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.3e-87 326.6 375 50.4
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 3.0e-87 326.2 343 53.1
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 3.0e-87 326.2 278 62.6
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.0e-87 326.2 349 51.9
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 5.0e-87 325.5 348 51.1
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 6.6e-87 325.1 343 53.1
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.1e-86 324.3 342 52.9
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.1e-86 324.3 340 50.3
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.5e-86 323.9 347 51.3
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 7.3e-86 321.6 355 51.8
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 7.3e-86 321.6 348 51.1
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 3.6e-85 319.3 309 56.3
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.7e-85 318.9 316 52.2
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 4.0e-84 315.8 403 46.7
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 2.6e-83 313.2 348 50.9
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 7.5e-83 311.6 353 49.3
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.3e-82 310.8 354 49.7
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 6.4e-82 308.5 340 50.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.4e-81 307.4 344 49.4
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 4.1e-81 305.8 345 49.9
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 2.7e-80 303.1 347 49.6
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.5e-80 302.8 275 58.2
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 6.0e-80 302.0 344 48.5
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 6.0e-80 302.0 338 50.6
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.9e-79 299.3 313 50.8
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 2.5e-78 296.6 347 47.6
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.3e-78 296.2 324 50.9
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 9.5e-78 294.7 310 52.3
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 4.0e-76 289.3 342 46.8
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 5.2e-76 288.9 343 47.2
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.8e-76 288.5 327 47.4
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.7e-74 283.9 303 51.8
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.9e-74 283.1 308 50.3
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 6.4e-74 282.0 336 47.0
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.1e-73 281.2 310 51.3
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 5.1e-71 272.3 310 49.0
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.5e-70 270.8 249 59.8
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 4.0e-68 262.7 317 48.9
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 5.2e-68 262.3 243 57.2
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.7e-66 257.3 212 60.8
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.2e-65 252.7 309 44.7
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.6e-64 250.8 309 44.7
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.1e-64 250.4 299 45.8
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 4.6e-64 249.2 266 49.6
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.6e-64 249.2 334 46.1
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.3e-61 241.1 254 53.5
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.8e-61 240.0 303 44.2
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.8e-60 237.3 311 45.7
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 5.3e-60 235.7 142 78.9
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 6.9e-60 235.3 309 43.0
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.3e-54 216.1 299 39.1
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.3e-53 214.5 308 42.9
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 6.2e-53 212.2 346 40.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.1e-52 211.5 306 42.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 6.4e-50 202.2 198 55.1
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 5.4e-49 199.1 316 38.9
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 7.1e-49 198.7 283 41.3
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.3e-47 194.5 249 47.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 8.7e-47 191.8 215 48.8
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 5.6e-46 189.1 244 45.1
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 4.8e-45 186.0 337 36.2
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.8e-44 184.1 216 45.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 5.3e-44 182.6 245 41.2
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 2.0e-43 180.6 253 43.5
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 7.1e-41 172.2 229 44.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 7.4e-38 162.2 221 42.1
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 1.6e-37 161.0 139 57.6
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.1e-36 158.3 100 73.0
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.0e-34 151.8 176 48.3
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 7.4e-30 135.6 205 42.0
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 5.0e-26 122.9 103 63.1
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 9.4e-25 118.6 73 72.6
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.6e-24 117.9 199 37.2
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.7e-24 117.1 201 38.8
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 4.6e-24 116.3 82 65.9
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 8.2e-21 105.5 189 34.9
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 9.1e-20 102.1 86 58.1
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.7e-16 90.5 71 59.2
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 3.9e-15 86.7 63 63.5
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 9.1e-12 75.5 52 73.1
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 7.7e-11 72.4 107 42.1
Medtr4g097660 Medicago truncatula HOM05D003737 ORTHO05D048953 8.0e-08 62.4 66 45.5
Medtr4g097690 Medicago truncatula HOM05D003737 ORTHO05D048953 8.0e-08 62.4 44 61.4
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 6.7e-07 59.3 34 79.4


User provided reference genes

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